1 |
6406
|
aaronmk
|
REMIB,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
2 |
6409
|
aaronmk
|
accession_number,"/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
3 |
|
|
|
4 |
|
|
[1] Using the following query:
|
5 |
|
|
-----
|
6 |
|
|
SELECT acronym, accession_number, count(*)
|
7 |
|
|
FROM ""REMIB"".""Specimen""
|
8 |
|
|
GROUP BY acronym, accession_number
|
9 |
|
|
HAVING count(*) > 1
|
10 |
|
|
-----"
|
11 |
|
|
acronym,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
|
12 |
6756
|
aaronmk
|
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
13 |
4950
|
aaronmk
|
|
14 |
|
|
[1] Using the following query:
|
15 |
|
|
-----
|
16 |
|
|
SELECT acronym, accession_number, count(*)
|
17 |
|
|
FROM ""REMIB"".""Specimen""
|
18 |
|
|
GROUP BY acronym, accession_number
|
19 |
|
|
HAVING count(*) > 1
|
20 |
|
|
-----"
|
21 |
6756
|
aaronmk
|
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
22 |
6375
|
aaronmk
|
|
23 |
|
|
[1] Using the following query:
|
24 |
|
|
-----
|
25 |
|
|
SELECT acronym, accession_number, count(*)
|
26 |
|
|
FROM ""REMIB"".""Specimen""
|
27 |
|
|
GROUP BY acronym, accession_number
|
28 |
|
|
HAVING count(*) > 1
|
29 |
|
|
-----"
|
30 |
7547
|
aaronmk
|
acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",
|
31 |
6756
|
aaronmk
|
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
32 |
4950
|
aaronmk
|
|
33 |
|
|
[1] Using the following query:
|
34 |
|
|
-----
|
35 |
|
|
SELECT acronym, accession_number, count(*)
|
36 |
|
|
FROM ""REMIB"".""Specimen""
|
37 |
|
|
GROUP BY acronym, accession_number
|
38 |
|
|
HAVING count(*) > 1
|
39 |
|
|
-----"
|
40 |
7719
|
aaronmk
|
locality,"/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
41 |
|
|
habitat,"/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
42 |
4566
|
aaronmk
|
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
43 |
|
|
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
44 |
|
|
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
45 |
4950
|
aaronmk
|
accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
46 |
|
|
|
47 |
|
|
[1] Using the following query:
|
48 |
|
|
-----
|
49 |
|
|
SELECT acronym, accession_number, count(*)
|
50 |
|
|
FROM ""REMIB"".""Specimen""
|
51 |
|
|
GROUP BY acronym, accession_number
|
52 |
|
|
HAVING count(*) > 1
|
53 |
|
|
-----"
|
54 |
6791
|
aaronmk
|
accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
55 |
6375
|
aaronmk
|
|
56 |
|
|
[1] Using the following query:
|
57 |
|
|
-----
|
58 |
|
|
SELECT acronym, accession_number, count(*)
|
59 |
|
|
FROM ""REMIB"".""Specimen""
|
60 |
|
|
GROUP BY acronym, accession_number
|
61 |
|
|
HAVING count(*) > 1
|
62 |
|
|
-----"
|
63 |
7547
|
aaronmk
|
acronym,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",
|
64 |
|
|
acronym,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",
|
65 |
6171
|
aaronmk
|
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
66 |
5657
|
aaronmk
|
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
67 |
|
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
68 |
|
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
69 |
7142
|
aaronmk
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
70 |
9882
|
aaronmk
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
71 |
7142
|
aaronmk
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
72 |
5657
|
aaronmk
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
73 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
74 |
5783
|
aaronmk
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
75 |
4950
|
aaronmk
|
accession_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
76 |
|
|
|
77 |
|
|
[1] Using the following query:
|
78 |
|
|
-----
|
79 |
|
|
SELECT acronym, accession_number, count(*)
|
80 |
|
|
FROM ""REMIB"".""Specimen""
|
81 |
|
|
GROUP BY acronym, accession_number
|
82 |
|
|
HAVING count(*) > 1
|
83 |
|
|
-----"
|
84 |
7719
|
aaronmk
|
locality,"/location/locationnarrative/_merge/1/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
85 |
|
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB); Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
86 |
7720
|
aaronmk
|
lat_deg,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_dms_to_dd/deg/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
87 |
|
|
lat_min,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_dms_to_dd/min/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
88 |
|
|
lat_sec,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_dms_to_dd/sec/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
89 |
|
|
long_deg,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_dms_to_dd/deg/_map:[./{""-999"",99,999,1000}=,*=*]/value",-99 is a valid longitude for Mexico
|
90 |
|
|
long_min,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_dms_to_dd/min/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
91 |
|
|
long_sec,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_dms_to_dd/sec/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
92 |
7719
|
aaronmk
|
country,"/location/locationplace/*_id/place/country/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
93 |
|
|
county,"/location/locationplace/*_id/place/county/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
94 |
7720
|
aaronmk
|
lat_deg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_dms_to_dd/deg/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
95 |
|
|
lat_min,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_dms_to_dd/min/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
96 |
|
|
lat_sec,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_dms_to_dd/sec/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
97 |
|
|
long_deg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_dms_to_dd/deg/_map:[./{""-999"",99,999,1000}=,*=*]/value",-99 is a valid longitude for Mexico
|
98 |
|
|
long_min,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_dms_to_dd/min/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
99 |
|
|
long_sec,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_dms_to_dd/sec/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
100 |
7719
|
aaronmk
|
country,"/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
101 |
|
|
county,"/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
102 |
|
|
state,"/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
103 |
|
|
state,"/location/locationplace/*_id/place/stateprovince/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
104 |
4638
|
aaronmk
|
preparation,,** No join mapping for preparations **
|