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1 7552 aaronmk
ARIZ,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
2
catalogNumber,"/_if[@name=""if specimen""]/cond/_exists",
3
occid,"/_if[@name=""if specimen""]/cond/_exists/_first/1",
4
occurrenceID,"/_if[@name=""if specimen""]/cond/_exists/_first/2",Not populated for all rows
5
occid,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1/_first/1",
6
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1/_first/2",Not populated for all rows
7
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
8
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
9
occid,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists/_first/1",
10
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists/_first/2",Not populated for all rows
11
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
12
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
13 7703 aaronmk
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/1,
14
maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/2,
15 7552 aaronmk
recordNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
16
occid,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/1",
17
occurrenceID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/2",Not populated for all rows
18 10173 aaronmk
cultivationStatus,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_map:[0=,*=*]/value","cultivated can only be true or NULL, not false "
19 7552 aaronmk
locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
20
habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
21
samplingProtocol,/location/locationevent/*_id/method/name,
22
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
23
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value",
24
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value",
25
eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value,
26
eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value,
27
dateIdentified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
28
taxonRemarks,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/notes",
29
identificationQualifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
30
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
31 7713 aaronmk
occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
32 7552 aaronmk
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
33
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
34 7610 aaronmk
reproductiveCondition,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
35 7552 aaronmk
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
36
recordNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
37
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
38
occid,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists/_first/1",
39
occurrenceID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists/_first/2",Not populated for all rows
40
occid,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode/_first/1,
41
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode/_first/2,Not populated for all rows
42
recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
43
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
44
recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
45
recordNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
46
occid,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/1",
47
occurrenceID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/2",Not populated for all rows
48 10173 aaronmk
cultivationStatus,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_map:[0=,*=*]/value","cultivated can only be true or NULL, not false "
49 7552 aaronmk
occid,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3/_first/1,
50
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3/_first/2,Not populated for all rows
51
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
52
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
53
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
54
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
55
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
56
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
57
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank,
58
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank",
59
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
60
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
61 9882 aaronmk
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
62 7552 aaronmk
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
63
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
64
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
65
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
66
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
67
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
68
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
69
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
70
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
71
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
72
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank,
73
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
74
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
75
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
76
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
77
recordNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
78
locality,/location/locationnarrative/_merge/1,
79
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
80 8078 aaronmk
locationRemarks,/location/locationnarrative/_merge/4,
81 7552 aaronmk
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
82
footprintWKT,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
83
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
84
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
85
verbatimCoordinates,/location/locationplace/*_id/place/*_id/coordinates/verbatimcoordinates,
86
country,/location/locationplace/*_id/place/country,
87
county,/location/locationplace/*_id/place/county,
88
decimalLatitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
89
decimalLongitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
90
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
91
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
92
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
93
stateProvince,/location/locationplace/*_id/place/stateprovince,
94
verbatimElevation,/location/verbatimelevation,
95
associatedCollectors,,** No join mapping for *associatedCollectors **
96
associatedOccurrences,,** No join mapping for associatedOccurrences **
97
associatedTaxa,,** No join mapping for associatedTaxa **
98
attributes,,** No join mapping for *attributes **
99
basisOfRecord,,** No join mapping for basisOfRecord **
100
collectionCode,,** No non-empty join mapping for UNUSED **
101
collectionID,,** No non-empty join mapping for UNUSED **
102
collid,,** No join mapping for *collid **
103 7660 aaronmk
coordinatePrecision,,** No non-empty join mapping for UNUSED **
104 7552 aaronmk
dataGeneralizations,,** No join mapping for dataGeneralizations **
105
datasetID,,** No non-empty join mapping for UNUSED **
106
dateLastModified,,** No join mapping for modified **
107
day,,** No join mapping for day **
108
dbpk,,** No join mapping for *dbpk ** Only populated for 2651 rows
109
deaccessioned,,** No join mapping for *deaccessioned **
110
disposition,,** No join mapping for disposition **
111
duplicateQuantity,,** No join mapping for *duplicateQuantity **
112
duplicateid,,** No join mapping for *duplicateid **
113
dynamicProperties,,** No join mapping for dynamicProperties **
114
endDayOfYear,,** No join mapping for endDayOfYear **
115
establishmentMeans,,"** No non-empty join mapping for OMIT ** Only populated for 1 row, which also has cultivationStatus"
116
fieldNotes,,** No non-empty join mapping for UNUSED **
117
fieldnumber,,** No non-empty join mapping for UNUSED **
118
genericcolumn1,,** No join mapping for *genericcolumn1 **
119
genericcolumn2,,** No join mapping for *genericcolumn2 **
120
geodeticDatum,,** No join mapping for geodeticDatum **
121
georeferenceProtocol,,** No join mapping for georeferenceProtocol **
122
georeferenceRemarks,,** No join mapping for georeferenceRemarks **
123
georeferenceSources,,** No join mapping for georeferenceSources **
124
georeferenceVerificationStatus,,** No join mapping for georeferenceVerificationStatus **
125
georeferencedBy,,** No join mapping for georeferencedBy **
126
identificationReferences,,** No join mapping for identificationReferences **
127
identificationRemarks,,** No join mapping for identificationRemarks **
128
informationWithheld,,** No join mapping for informationWithheld **
129
institutionCode,,** No non-empty join mapping for UNUSED **
130
institutionID,,** No non-empty join mapping for UNUSED **
131
labelProject,,** No join mapping for *labelProject **
132
language,,** No join mapping for language **
133
lifeStage,,** No join mapping for lifeStage **
134
localitySecurity,,** No join mapping for *localitySecurity **
135
localitySecurityReason,,** No join mapping for *localitySecurityReason **
136
modified,,** No join mapping for modified **
137
month,,** No join mapping for month **
138
municipality,,** No join mapping for municipality **
139
observeruid,,** No join mapping for *observeruid **
140
otherCatalogNumbers,,** No join mapping for otherCatalogNumbers **
141 7646 aaronmk
ownerInstitutionCode,,** No join mapping for specimenOwner ** Only populated for 547 rows
142 7552 aaronmk
preparations,,** No join mapping for preparations **
143
previousIdentifications,,** No join mapping for previousIdentifications **
144
processingstatus,,** No join mapping for *processingstatus **
145
recordEnteredBy,,** No join mapping for *recordEnteredBy **
146
recordedById,,** No join mapping for *recordedById **
147
sciname,,** No join mapping for *sciname **
148
startDayOfYear,,** No join mapping for startDayOfYear **
149
substrate,,** No join mapping for *substrate **
150
tidinterpreted,,** No join mapping for *tidinterpreted **
151
typeStatus,,** No join mapping for typeStatus **
152
verbatimAttributes,,** No join mapping for *verbatimAttributes **
153 7809 aaronmk
verbatimCoordinateSystem,,** No non-empty join mapping for UNUSED **
154 7552 aaronmk
verbatimEventDate,,** No join mapping for verbatimEventDate **
155
year,,** No join mapping for year **