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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10267 over 11 years Aaron Marcuse-Kubitza backups/Makefile: %.backup/restore: documented ...
  bin 10255 over 11 years Aaron Marcuse-Kubitza bin/filter_out_ci, lib/maps.py: simplify(): als...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10270 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/*/*/map.csv (e.g. inputs/GBIF/ra...
  lib 10271 over 11 years Aaron Marcuse-Kubitza lib/sh/util.sh: moved runscript-related command...
  mappings 10173 over 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: cultivated, oldGr...
  planning 10266 over 11 years Aaron Marcuse-Kubitza planning/workflow/bien3_architecture.pptx: expo...
  schemas 10259 over 11 years Aaron Marcuse-Kubitza inputs/newWorld/: switched to new-style import,...
  web 10175 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10223 over 11 years Aaron Marcuse-Kubitza /Makefile: mysql-Linux: also install mysql-work...
README.TXT 23.2 KB 10222 over 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: to backup files not i...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10271 07/14/2013 01:39 AM Aaron Marcuse-Kubitza

lib/sh/util.sh: moved runscript-related commands to lib/runscripts/util.run because these only apply to runscripts
10270 07/14/2013 01:26 AM Aaron Marcuse-Kubitza

bugfix: inputs/*/*/map.csv (e.g. inputs/GBIF/raw_occurrence_record_plants/map.csv): remapped author to scientificNameAuthorship rather than authors, which it had gotten incorrectly automapped to. note that the VegCore term authors has now been renamed to data_authors to avoid ambiguity, but incorrect automappings resulting from it had not yet been fixed.
10269 07/14/2013 12:54 AM Aaron Marcuse-Kubitza

bugfix: inputs/GBIF/raw_occurrence_record_plants/run: updated herbaria.ih column names for staging table column renaming
10268 07/14/2013 12:33 AM Aaron Marcuse-Kubitza

bugfix: inputs/GBIF/table.run: need to include lib/runscripts/mysql.table.run instead of table.run (table.run was accidentally substituted when inputs/.NCBI/table.run was copied to all new-style datasources
10267 07/13/2013 10:35 PM Aaron Marcuse-Kubitza

backups/Makefile: %.backup/restore: documented runtime (11 h; ~5 h to insert data). note that this is still much shorter than re-running column-based import.
10266 07/12/2013 11:40 PM Aaron Marcuse-Kubitza

planning/workflow/bien3_architecture.pptx: exported from bien3_architecture.odp, as requested by Martha. the .pptx format is buggy and doesn't show the slide thumbnails on the slide notes view, but will have to do as .ppt (the older MS PowerPoint format) doesn't support the graphics.
10265 07/11/2013 04:08 PM Aaron Marcuse-Kubitza

planning/workflow/bien3_architecture.odp: added wiki page notes (wiki.vegpath.org/2013-06-20_conference_call, wiki.vegpath.org/2013-06-27_conference_call) in the slide notes
10264 07/11/2013 03:41 PM Aaron Marcuse-Kubitza

planning/workflow/bien3_architecture.odp: added responses to the red-highlighted questions (from e-mails to the list) in the slide notes
10263 07/11/2013 02:54 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: fixed formatting: removed internal cell borders in spacer lines
10262 07/11/2013 02:48 PM Aaron Marcuse-Kubitza

added planning/workflow/bien3_architecture.odp with changes from Skype call with Martha, which include wiki page notes (wiki.vegpath.org/2013-06-20_conference_call) about the refactor-in-place method in the Notes area

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