Revision 10292
Added by Aaron Marcuse-Kubitza about 11 years ago
| inputs/Madidi/IndividualObservation/map.csv | ||
|---|---|---|
| 13 | 13 |
Tag,tag,, |
| 14 | 14 |
WasCollected,*WasCollected,, |
| 15 | 15 |
SpecimenID,accessionNumber,, |
| 16 |
SeniorCollector,recordedBy,/_first/1/_first/2,
|
|
| 17 |
CollectorString,recordedBy,/_first/1/_first/1,
|
|
| 18 |
CollectorStringShortened,recordedBy,/_first/2,
|
|
| 16 |
SeniorCollector,DUPLICATE#of:CollectorString#SeniorCollector,,
|
|
| 17 |
CollectorString,recordedBy,, |
|
| 18 |
CollectorStringShortened,DUPLICATE#of:CollectorString#CollectorStringShortened,,
|
|
| 19 | 19 |
CollectionNumber,collectorNumber,, |
| 20 | 20 |
Institutions,specimenHolderInstitutions,, |
| 21 | 21 |
InstitutionString,*InstitutionString,, |
| 22 |
CollectorAbbrev,recordedBy,/_first/3,
|
|
| 22 |
CollectorAbbrev,DUPLICATE#of:CollectorString#CollectorAbbrev,,
|
|
| 23 | 23 |
CurrentDet,scientificName,, |
| 24 | 24 |
CurrentDetRank,taxonRank,, |
| 25 | 25 |
CurrentDetFamily,OMIT#CurrentDetFamily,,"Omitted because includes *family* author, which TNRS can’t handle" |
| inputs/Madidi/IndividualObservation/VegBIEN.csv | ||
|---|---|---|
| 43 | 43 |
CollectionNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 44 | 44 |
FieldNameFullName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/1", |
| 45 | 45 |
CurrentDet,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
| 46 |
CollectorString,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_first/1/_first/1, |
|
| 47 |
SeniorCollector,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_first/1/_first/2, |
|
| 48 |
CollectorStringShortened,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_first/2, |
|
| 49 |
CollectorAbbrev,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_first/3, |
|
| 46 |
CollectorString,/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
|
| 50 | 47 |
HabitName,/location/locationevent/taxonoccurrence/growthform, |
| 51 | 48 |
CollectionNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
| 52 | 49 |
CurrentDetRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank", |
| ... | ... | |
| 89 | 86 |
CauseOfDeath4,,** No non-empty join mapping for UNUSED#CauseOfDeath4 ** |
| 90 | 87 |
CauseOfDeath5,,** No non-empty join mapping for UNUSED#CauseOfDeath5 ** |
| 91 | 88 |
Circumference,,** No join mapping for *Circumference ** |
| 89 |
CollectorAbbrev,,** No non-empty join mapping for DUPLICATE#of:CollectorString#CollectorAbbrev ** |
|
| 90 |
CollectorStringShortened,,** No non-empty join mapping for DUPLICATE#of:CollectorString#CollectorStringShortened ** |
|
| 92 | 91 |
CommonName,,** No join mapping for vernacularName ** |
| 93 | 92 |
CompoundLeaf,,** No non-empty join mapping for UNUSED#CompoundLeaf ** |
| 94 | 93 |
CompoundLeafID,,** No non-empty join mapping for UNUSED#CompoundLeafID ** |
| ... | ... | |
| 157 | 156 |
SLAArea7,,** No non-empty join mapping for UNUSED#SLAArea7 ** |
| 158 | 157 |
SLAArea8,,** No non-empty join mapping for UNUSED#SLAArea8 ** |
| 159 | 158 |
SLAArea9,,** No non-empty join mapping for UNUSED#SLAArea9 ** |
| 159 |
SeniorCollector,,** No non-empty join mapping for DUPLICATE#of:CollectorString#SeniorCollector ** |
|
| 160 | 160 |
SubplotX2,,** No join mapping for *SubplotX2 ** |
| 161 | 161 |
SubplotY2,,** No join mapping for *SubplotY2 ** |
| 162 | 162 |
Thickness1,,** No non-empty join mapping for UNUSED#Thickness1 ** |
| inputs/Madidi/IndividualObservation/new_terms.csv | ||
|---|---|---|
| 3 | 3 |
Tree,individualCode,, |
| 4 | 4 |
Trunk,authorStemCode,, |
| 5 | 5 |
SpecimenID,accessionNumber,, |
| 6 |
SeniorCollector,recordedBy,/_first/1/_first/2,
|
|
| 7 |
CollectorString,recordedBy,/_first/1/_first/1,
|
|
| 8 |
CollectorStringShortened,recordedBy,/_first/2,
|
|
| 6 |
SeniorCollector,DUPLICATE#of:CollectorString#SeniorCollector,,
|
|
| 7 |
CollectorString,recordedBy,, |
|
| 8 |
CollectorStringShortened,DUPLICATE#of:CollectorString#CollectorStringShortened,,
|
|
| 9 | 9 |
Institutions,specimenHolderInstitutions,, |
| 10 |
CollectorAbbrev,recordedBy,/_first/3,
|
|
| 10 |
CollectorAbbrev,DUPLICATE#of:CollectorString#CollectorAbbrev,,
|
|
| 11 | 11 |
CurrentDet,scientificName,, |
| 12 | 12 |
CurrentDetRank,taxonRank,, |
| 13 | 13 |
CurrentDetFamily,OMIT#CurrentDetFamily,,"Omitted because includes *family* author, which TNRS can’t handle" |
| inputs/Madidi/LocationObservation/map.csv | ||
|---|---|---|
| 1 | 1 |
Madidi,VegCore,Filter,Comments |
| 2 | 2 |
row_num,*row_num,, |
| 3 |
PlotID,locationID,/_first/2,
|
|
| 4 |
PlotName,locationID,/_first/1,
|
|
| 3 |
PlotID,DUPLICATE#of:PlotName#PlotID,,
|
|
| 4 |
PlotName,locationID,, |
|
| 5 | 5 |
PlotInventoryName,authorEventCode,, |
| 6 | 6 |
LatitudeDecDeg,decimalLatitude,, |
| 7 | 7 |
LongitudeDecDeg,decimalLongitude,, |
| inputs/Madidi/LocationObservation/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
Madidi,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
Plot Name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
| 3 |
PlotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists/_first/1", |
|
| 4 |
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists/_first/2", |
|
| 3 |
PlotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
|
| 5 | 4 |
PlotInventoryName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else", |
| 6 |
PlotName,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_first/1", |
|
| 7 |
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_first/2", |
|
| 5 |
PlotName,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
|
| 8 | 6 |
Plot Name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
| 9 |
PlotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode/_first/1", |
|
| 10 |
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode/_first/2", |
|
| 7 |
PlotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
|
| 11 | 8 |
Locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1, |
| 12 | 9 |
Expedition Name,/location/locationevent/*_id/project/projectname, |
| 13 | 10 |
Expedition Number,/location/locationevent/*_id/project/sourceaccessioncode, |
| 14 | 11 |
PlotInventoryName,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode", |
| 15 | 12 |
PlotInventoryName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 16 | 13 |
Plot Name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
| 17 |
PlotName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then/_first/1", |
|
| 18 |
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then/_first/2", |
|
| 14 |
PlotName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
|
| 19 | 15 |
PlotInventoryName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authoreventcode", |
| 20 | 16 |
Vegetation Type,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
| 21 | 17 |
Interchangeable Acidity,/location/locationevent/soilsample/acidity_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
| ... | ... | |
| 36 | 32 |
Textural Class,/location/locationevent/soilsample/texture, |
| 37 | 33 |
Plot Name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 38 | 34 |
PlotInventoryName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 39 |
PlotName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists/_first/1", |
|
| 40 |
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists/_first/2", |
|
| 35 |
PlotName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
| 41 | 36 |
Locality,/location/locationnarrative/_merge/1, |
| 42 | 37 |
Notes,/location/locationnarrative/_merge/4, |
| 43 | 38 |
Notes 2,/location/locationnarrative/_merge/4, |
| ... | ... | |
| 46 | 41 |
LatitudeDecDeg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 47 | 42 |
LongitudeDecDeg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 48 | 43 |
Slope,/location/slopegradient_fraction/_alt/1, |
| 49 |
PlotName,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists/_first/1", |
|
| 50 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists/_first/2", |
|
| 51 |
PlotName,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1/_first/1", |
|
| 52 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1/_first/2", |
|
| 44 |
PlotName,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
|
| 45 |
PlotName,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 53 | 46 |
Collaborators,,** No join mapping for *Collaborators ** |
| 54 | 47 |
Collaborators (OLD),,** No join mapping for *Collaborators (OLD) ** |
| 55 | 48 |
Funding agency,,** No join mapping for *Funding agency ** |
| ... | ... | |
| 62 | 55 |
Other Epilocs (OLD),,** No join mapping for *Other Epilocs (OLD) ** |
| 63 | 56 |
Other epilocs,,** No join mapping for *Other epilocs ** |
| 64 | 57 |
Plot Compass Direction,,** No join mapping for *Plot Compass Direction ** |
| 58 |
PlotID,,** No non-empty join mapping for DUPLICATE#of:PlotName#PlotID ** |
|
| 65 | 59 |
Political Location,,** No join mapping for *Political Location ** |
| 66 | 60 |
Qualifier Available Phosphor,,** No join mapping for *Qualifier Available Phosphor ** |
| 67 | 61 |
Qualifier Interchangeable Acidity,,** No join mapping for *Qualifier Interchangeable Acidity ** |
| inputs/Madidi/map.csv | ||
|---|---|---|
| 24 | 24 |
Available Phosphor,phosphorus_percent,,Assuming units are % based on the range of values |
| 25 | 25 |
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity_cmol_kg,, |
| 26 | 26 |
CIC,cationExchangeCapacity_cmol_kg,, |
| 27 |
CollectorAbbrev,recordedBy,/_first/3,
|
|
| 28 |
CollectorString,recordedBy,/_first/1/_first/1,
|
|
| 29 |
CollectorStringShortened,recordedBy,/_first/2,
|
|
| 27 |
CollectorAbbrev,DUPLICATE#of:CollectorString#CollectorAbbrev,,
|
|
| 28 |
CollectorString,recordedBy,, |
|
| 29 |
CollectorStringShortened,DUPLICATE#of:CollectorString#CollectorStringShortened,,
|
|
| 30 | 30 |
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,, |
| 31 | 31 |
CurrentDet,scientificName,, |
| 32 | 32 |
CurrentDetFamily,OMIT#CurrentDetFamily,,"Omitted because includes *family* author, which TNRS can’t handle" |
| ... | ... | |
| 85 | 85 |
Orientación/exposicion,slopeAspect,,Part files provide either this field or Direction |
| 86 | 86 |
PlotInventoryName,authorEventCode,, |
| 87 | 87 |
Qualifier,identificationQualifier,, |
| 88 |
SeniorCollector,recordedBy,/_first/1/_first/2,
|
|
| 88 |
SeniorCollector,DUPLICATE#of:CollectorString#SeniorCollector,,
|
|
| 89 | 89 |
Sequence,subplot,, |
| 90 | 90 |
Slope,slopeGradient,, |
| 91 | 91 |
Specie+autor,scientificName,, |
| inputs/ARIZ/omoccurrences/map.csv | ||
|---|---|---|
| 1 | 1 |
ARIZ,VegCore,Filter,Comments |
| 2 |
occid,occurrenceID,/_first/1,
|
|
| 2 |
occid,occurrenceID,, |
|
| 3 | 3 |
collid,*collid,, |
| 4 | 4 |
dbpk,*dbpk,,Only populated for 2651 rows |
| 5 | 5 |
basisOfRecord,basisOfRecord,, |
| 6 |
occurrenceID,occurrenceID,/_first/2,Not populated for all rows
|
|
| 6 |
occurrenceID,DUPLICATE#of:occid#occurrenceID,,Not populated for all rows
|
|
| 7 | 7 |
catalogNumber,accessionNumber,, |
| 8 | 8 |
institutionID,UNUSED#institutionID,, |
| 9 | 9 |
collectionID,UNUSED#collectionID,, |
| inputs/ARIZ/omoccurrences/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
ARIZ,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
catalogNumber,"/_if[@name=""if specimen""]/cond/_exists", |
| 3 |
occid,"/_if[@name=""if specimen""]/cond/_exists/_first/1", |
|
| 4 |
occurrenceID,"/_if[@name=""if specimen""]/cond/_exists/_first/2",Not populated for all rows |
|
| 5 |
occid,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1/_first/1", |
|
| 6 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1/_first/2",Not populated for all rows |
|
| 3 |
occid,"/_if[@name=""if specimen""]/cond/_exists", |
|
| 4 |
occid,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1", |
|
| 7 | 5 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists", |
| 8 | 6 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
| 9 |
occid,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists/_first/1", |
|
| 10 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists/_first/2",Not populated for all rows |
|
| 7 |
occid,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
|
| 11 | 8 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 12 | 9 |
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value", |
| 13 | 10 |
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/1, |
| 14 | 11 |
maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/2, |
| 12 |
occid,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 15 | 13 |
recordNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
| 16 |
occid,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/1", |
|
| 17 |
occurrenceID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/2",Not populated for all rows |
|
| 18 | 14 |
cultivationStatus,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_map:[0=,*=*]/value","cultivated can only be true or NULL, not false " |
| 19 | 15 |
locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1, |
| 20 | 16 |
habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3, |
| ... | ... | |
| 35 | 31 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
| 36 | 32 |
recordNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else", |
| 37 | 33 |
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 38 |
occid,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists/_first/1", |
|
| 39 |
occurrenceID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists/_first/2",Not populated for all rows |
|
| 40 |
occid,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode/_first/1, |
|
| 41 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode/_first/2,Not populated for all rows |
|
| 34 |
occid,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
|
| 35 |
occid,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
|
| 42 | 36 |
recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 43 | 37 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
| 44 | 38 |
recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
| 39 |
occid,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 45 | 40 |
recordNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
| 46 |
occid,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/1", |
|
| 47 |
occurrenceID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/2",Not populated for all rows |
|
| 48 | 41 |
cultivationStatus,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_map:[0=,*=*]/value","cultivated can only be true or NULL, not false " |
| 49 |
occid,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3/_first/1, |
|
| 50 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3/_first/2,Not populated for all rows |
|
| 42 |
occid,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
|
| 51 | 43 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 52 | 44 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank", |
| 53 | 45 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| ... | ... | |
| 137 | 129 |
month,,** No join mapping for month ** |
| 138 | 130 |
municipality,,** No join mapping for municipality ** |
| 139 | 131 |
observeruid,,** No join mapping for *observeruid ** |
| 132 |
occurrenceID,,** No non-empty join mapping for DUPLICATE#of:occid#occurrenceID ** Not populated for all rows |
|
| 140 | 133 |
otherCatalogNumbers,,** No join mapping for otherCatalogNumbers ** |
| 141 | 134 |
ownerInstitutionCode,,** No join mapping for specimenOwner ** Only populated for 547 rows |
| 142 | 135 |
preparations,,** No join mapping for preparations ** |
| inputs/ARIZ/omoccurrences/new_terms.csv | ||
|---|---|---|
| 1 |
occid,occurrenceID,/_first/1,
|
|
| 1 |
occid,occurrenceID,, |
|
| 2 | 2 |
cultivationStatus,cultivated,"/_map:[0=,*=*]/value","cultivated can only be true or NULL, not false " |
Also available in: Unified diff
inputs/*/*/map.csv: replaced /_first filter with mapping to DUPLICATE special term (VegCore.vegpath.org?DUPLICATE). this removes collisions that don't need a postprocessing formula to combine the columns.