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1
|
ARIZ,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
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2
|
catalogNumber,"/_if[@name=""if specimen""]/cond/_exists",
|
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3
|
occid,"/_if[@name=""if specimen""]/cond/_exists",
|
|
4
|
occid,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1",
|
|
5
|
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
|
|
6
|
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
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7
|
occid,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
|
8
|
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
|
|
9
|
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
|
|
10
|
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/1,
|
|
11
|
maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/2,
|
|
12
|
occid,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
13
|
recordNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
14
|
cultivationStatus,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_first/1/_map:[0=,*=*]/value","cultivated can only be true or NULL, not false "
|
|
15
|
locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
|
|
16
|
habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
|
|
17
|
samplingProtocol,/location/locationevent/*_id/method/name,
|
|
18
|
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
|
|
19
|
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value",
|
|
20
|
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value",
|
|
21
|
eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value,
|
|
22
|
eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value,
|
|
23
|
dateIdentified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
|
|
24
|
taxonRemarks,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/notes",
|
|
25
|
identificationQualifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
|
|
26
|
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
|
|
27
|
occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
28
|
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
|
29
|
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
|
|
30
|
reproductiveCondition,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
|
|
31
|
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
|
32
|
recordNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
|
33
|
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
|
34
|
occid,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
|
35
|
occid,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
|
|
36
|
recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
|
37
|
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
|
|
38
|
recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
|
39
|
occid,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
40
|
recordNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
41
|
cultivationStatus,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_first/1/_map:[0=,*=*]/value","cultivated can only be true or NULL, not false "
|
|
42
|
occid,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
|
|
43
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
|
|
44
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
|
|
45
|
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
46
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
47
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
48
|
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
|
49
|
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank,
|
|
50
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank",
|
|
51
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
|
52
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
|
|
53
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
|
54
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
|
55
|
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
|
56
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
57
|
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
|
58
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
|
|
59
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
|
60
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
|
61
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
|
62
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
63
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
|
|
64
|
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank,
|
|
65
|
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
|
|
66
|
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
|
|
67
|
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
|
|
68
|
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
|
69
|
recordNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
|
70
|
locality,/location/locationnarrative/_merge/1,
|
|
71
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
|
72
|
locationRemarks,/location/locationnarrative/_merge/4,
|
|
73
|
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
|
|
74
|
footprintWKT,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
|
|
75
|
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
|
|
76
|
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
|
|
77
|
verbatimCoordinates,/location/locationplace/*_id/place/*_id/coordinates/verbatimcoordinates,
|
|
78
|
country,/location/locationplace/*_id/place/country,
|
|
79
|
county,/location/locationplace/*_id/place/county,
|
|
80
|
decimalLatitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
|
81
|
decimalLongitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
|
82
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
|
83
|
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
|
84
|
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
|
85
|
stateProvince,/location/locationplace/*_id/place/stateprovince,
|
|
86
|
verbatimElevation,/location/verbatimelevation,
|
|
87
|
associatedCollectors,,** No join mapping for *associatedCollectors **
|
|
88
|
associatedOccurrences,,** No join mapping for associatedOccurrences **
|
|
89
|
associatedTaxa,,** No join mapping for associatedTaxa **
|
|
90
|
attributes,,** No join mapping for *attributes **
|
|
91
|
basisOfRecord,,** No join mapping for basisOfRecord **
|
|
92
|
collectionCode,,** No non-empty join mapping for UNUSED#collectionCode **
|
|
93
|
collectionID,,** No non-empty join mapping for UNUSED#collectionID **
|
|
94
|
collid,,** No join mapping for *collid **
|
|
95
|
coordinatePrecision,,** No non-empty join mapping for UNUSED#coordinatePrecision **
|
|
96
|
dataGeneralizations,,** No join mapping for dataGeneralizations **
|
|
97
|
datasetID,,** No non-empty join mapping for UNUSED#datasetID **
|
|
98
|
dateLastModified,,** No join mapping for modified **
|
|
99
|
day,,** No join mapping for day **
|
|
100
|
dbpk,,** No join mapping for *dbpk ** Only populated for 2651 rows
|
|
101
|
deaccessioned,,** No join mapping for *deaccessioned **
|
|
102
|
disposition,,** No join mapping for disposition **
|
|
103
|
duplicateQuantity,,** No join mapping for *duplicateQuantity **
|
|
104
|
duplicateid,,** No join mapping for *duplicateid **
|
|
105
|
dynamicProperties,,** No join mapping for dynamicProperties **
|
|
106
|
endDayOfYear,,** No join mapping for endDayOfYear **
|
|
107
|
establishmentMeans,,"** No non-empty join mapping for OMIT#establishmentMeans ** Only populated for 1 row, which also has cultivationStatus"
|
|
108
|
fieldNotes,,** No non-empty join mapping for UNUSED#fieldNotes **
|
|
109
|
fieldnumber,,** No non-empty join mapping for UNUSED#fieldnumber **
|
|
110
|
genericcolumn1,,** No join mapping for *genericcolumn1 **
|
|
111
|
genericcolumn2,,** No join mapping for *genericcolumn2 **
|
|
112
|
geodeticDatum,,** No join mapping for geodeticDatum **
|
|
113
|
georeferenceProtocol,,** No join mapping for georeferenceProtocol **
|
|
114
|
georeferenceRemarks,,** No join mapping for georeferenceRemarks **
|
|
115
|
georeferenceSources,,** No join mapping for georeferenceSources **
|
|
116
|
georeferenceVerificationStatus,,** No join mapping for georeferenceVerificationStatus **
|
|
117
|
georeferencedBy,,** No join mapping for georeferencedBy **
|
|
118
|
identificationReferences,,** No join mapping for identificationReferences **
|
|
119
|
identificationRemarks,,** No join mapping for identificationRemarks **
|
|
120
|
informationWithheld,,** No join mapping for informationWithheld **
|
|
121
|
institutionCode,,** No non-empty join mapping for UNUSED#institutionCode **
|
|
122
|
institutionID,,** No non-empty join mapping for UNUSED#institutionID **
|
|
123
|
labelProject,,** No join mapping for *labelProject **
|
|
124
|
language,,** No join mapping for language **
|
|
125
|
lifeStage,,** No join mapping for lifeStage **
|
|
126
|
localitySecurity,,** No join mapping for *localitySecurity **
|
|
127
|
localitySecurityReason,,** No join mapping for *localitySecurityReason **
|
|
128
|
modified,,** No join mapping for modified **
|
|
129
|
month,,** No join mapping for month **
|
|
130
|
municipality,,** No join mapping for municipality **
|
|
131
|
observeruid,,** No join mapping for *observeruid **
|
|
132
|
occurrenceID,,** No non-empty join mapping for DUPLICATE#of:occid#occurrenceID ** Not populated for all rows
|
|
133
|
otherCatalogNumbers,,** No join mapping for otherCatalogNumbers **
|
|
134
|
ownerInstitutionCode,,** No join mapping for specimenOwner ** Only populated for 547 rows
|
|
135
|
preparations,,** No join mapping for preparations **
|
|
136
|
previousIdentifications,,** No join mapping for previousIdentifications **
|
|
137
|
processingstatus,,** No join mapping for *processingstatus **
|
|
138
|
recordEnteredBy,,** No join mapping for *recordEnteredBy **
|
|
139
|
recordedById,,** No join mapping for *recordedById **
|
|
140
|
sciname,,** No join mapping for *sciname **
|
|
141
|
startDayOfYear,,** No join mapping for startDayOfYear **
|
|
142
|
substrate,,** No join mapping for *substrate **
|
|
143
|
tidinterpreted,,** No join mapping for *tidinterpreted **
|
|
144
|
typeStatus,,** No join mapping for typeStatus **
|
|
145
|
verbatimAttributes,,** No join mapping for *verbatimAttributes **
|
|
146
|
verbatimCoordinateSystem,,** No non-empty join mapping for UNUSED#verbatimCoordinateSystem **
|
|
147
|
verbatimEventDate,,** No join mapping for verbatimEventDate **
|
|
148
|
year,,** No join mapping for year **
|
