SELECT util.search_path_append('util');

SELECT create_if_not_exists($$CREATE INDEX "Specimen.acronym" ON $$||:table_str||$$ (acronym)$$);

-- remove frameshifted rows

-- rerun time: 6 s ("Time: 5537.211 ms") thanks to index

DELETE FROM :table WHERE acronym IS NULL;

DELETE FROM :table WHERE coll_year !~ '^(?:1[7-9]|20)\d{2}$';

DELETE FROM :table WHERE country ~ '\d';

DELETE FROM :table WHERE long_deg ~ '[[:alpha:]]' AND long_deg NOT IN ('RESTRINGIDO');

DELETE FROM :table WHERE long_min !~ '^\d*$';

DELETE FROM :table WHERE long_sec !~ '^\d*$';

DELETE FROM :table WHERE lat_min  !~ '^\d*$';

DELETE FROM :table WHERE lat_sec  !~ '^\d*$';

-- Remove institutions that we have direct data for

DELETE FROM :table

WHERE acronym IN (

    -- Comments are from e-mail from Brad Boyle on 2013-1-16

    'MO' -- "all MO records in REMIB are also available from MO's own website"

    --, 'ARIZ' -- Some REMIB ARIZ specimens not yet in ARIZ itself

    --, 'NY' -- Some REMIB NY specimens not yet in NY itself

    , 'TEX'

)

/* list obtained using the following on r9459:

SELECT DISTINCT dataprovider

FROM sourcelist

JOIN provider_count ON provider_count.dataprovider = sourcelist.name

WHERE source_id = source_by_shortname('REMIB')

ORDER BY dataprovider

*/

;