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Revision 10408

Added by Aaron Marcuse-Kubitza over 11 years ago

inputs/test_taxonomic_names/_scrub/run: exports/make(): tnrs.csv: include Name_matched instead of Genus_matched+Specific_epithet_matched because this also contains lower ranks, which are used in the TNRS synonymizing

View differences:

inputs/test_taxonomic_names/_scrub/tnrs.csv
1 
Name_number,Name_submitted,Family_matched,Genus_matched,Specific_epithet_matched,Taxonomic_status,Accepted_scientific_name
2 
0,Fam_indet. Boyle#6501,,,,,
3 
1,Poa annua var. eriolepis,,Poa,annua,Synonym,Poaceae Poa annua L.
4 
2,Poa annua,,Poa,annua,Accepted,Poaceae Poa annua L.
5 
3,Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire,,Silene,scouleri,Accepted,Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
6 
4,Fabaceae Boyle#6500,Fabaceae,,,Accepted,Fabaceae Lindl.
7 
5,Poa annua subsp. exilis,,Poa,annua,Synonym,Poaceae Poa infirma Kunth
8 
6,Poa annua ssp. exilis,,Poa,annua,Synonym,Poaceae Poa infirma Kunth
9 
7,Poa annua subvar. minima,,Poa,annua,Accepted,Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn.
10 
8,Poa annua L.,,Poa,annua,Accepted,Poaceae Poa annua L.
11 
9,Compositae indet. sp.1,Compositae,,,Synonym,Asteraceae Bercht. & J. Presl
12 
10,Poa annua fo. lanuginosa,,Poa,annua,Synonym,Poaceae Poa annua var. annua
13 
11,Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire,,Silene,scouleri,Accepted,Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
14 
12,"Fabaceae Inga ""fuzzy leaf""",Fabaceae,Inga,,Accepted,Fabaceae Inga Mill.
15 
13,Fabaceae Inga sp.3,Fabaceae,Inga,,Accepted,Fabaceae Inga Mill.
16 
14,Fabaceae unknown #2,Fabaceae,,,Accepted,Fabaceae Lindl.
17 
0,Poaceae Poa infirma Kunth,Poaceae,Poa,infirma,Accepted,Poaceae Poa infirma Kunth
18 
1,Fabaceae Lindl.,Fabaceae,,,Accepted,Fabaceae Lindl.
19 
2,Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn.,Poaceae,Poa,annua,Accepted,Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn.
20 
3,Fabaceae Inga Mill.,Fabaceae,Inga,,Accepted,Fabaceae Inga Mill.
21 
4,Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire,Caryophyllaceae,Silene,scouleri,Accepted,Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
22 
5,Poaceae Poa annua L.,Poaceae,Poa,annua,Accepted,Poaceae Poa annua L.
23 
6,Asteraceae Bercht. & J. Presl,Asteraceae,,,Accepted,Asteraceae
24 
7,Poaceae Poa annua var. annua,Poaceae,Poa,annua,Accepted,Poaceae Poa annua var. annua
25 
0,Asteraceae,Asteraceae,,,Accepted,Asteraceae
1 
Name_number,Name_submitted,Family_matched,Name_matched,Taxonomic_status,Accepted_scientific_name
2 
0,Fam_indet. Boyle#6501,,No suitable matches found.,,
3 
1,Poa annua var. eriolepis,,Poa annua var. eriolepis,Synonym,Poaceae Poa annua L.
4 
2,Poa annua,,Poa annua,Accepted,Poaceae Poa annua L.
5 
3,Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire,,Silene scouleri subsp. pringlei,Accepted,Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
6 
4,Fabaceae Boyle#6500,Fabaceae,Fabaceae,Accepted,Fabaceae Lindl.
7 
5,Poa annua subsp. exilis,,Poa annua subsp. exilis,Synonym,Poaceae Poa infirma Kunth
8 
6,Poa annua ssp. exilis,,Poa annua subsp. exilis,Synonym,Poaceae Poa infirma Kunth
9 
7,Poa annua subvar. minima,,Poa annua subvar. minima,Accepted,Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn.
10 
8,Poa annua L.,,Poa annua,Accepted,Poaceae Poa annua L.
11 
9,Compositae indet. sp.1,Compositae,Compositae,Synonym,Asteraceae Bercht. & J. Presl
12 
10,Poa annua fo. lanuginosa,,Poa annua fo. lanuginosa,Synonym,Poaceae Poa annua var. annua
13 
11,Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire,,Silene scouleri subsp. pringlei,Accepted,Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
14 
12,"Fabaceae Inga ""fuzzy leaf""",Fabaceae,Inga,Accepted,Fabaceae Inga Mill.
15 
13,Fabaceae Inga sp.3,Fabaceae,Inga,Accepted,Fabaceae Inga Mill.
16 
14,Fabaceae unknown #2,Fabaceae,Fabaceae,Accepted,Fabaceae Lindl.
17 
0,Poaceae Poa infirma Kunth,Poaceae,Poa infirma,Accepted,Poaceae Poa infirma Kunth
18 
1,Fabaceae Lindl.,Fabaceae,Fabaceae,Accepted,Fabaceae Lindl.
19 
2,Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn.,Poaceae,Poa annua subvar. minima,Accepted,Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn.
20 
3,Fabaceae Inga Mill.,Fabaceae,Inga,Accepted,Fabaceae Inga Mill.
21 
4,Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire,Caryophyllaceae,Silene scouleri subsp. pringlei,Accepted,Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
22 
5,Poaceae Poa annua L.,Poaceae,Poa annua,Accepted,Poaceae Poa annua L.
23 
6,Asteraceae Bercht. & J. Presl,Asteraceae,Asteraceae,Accepted,Asteraceae
24 
7,Poaceae Poa annua var. annua,Poaceae,Poa annua var. annua,Accepted,Poaceae Poa annua var. annua
25 
0,Asteraceae,Asteraceae,Asteraceae,Accepted,Asteraceae
inputs/test_taxonomic_names/_scrub/run
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		cols=(taxonlabel_id taxonomicname); pg_export_tables_to_dir taxonlabel
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	)
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	(schema=TNRS
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		cols=(Name_number Name_submitted Family_matched Genus_matched
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Specific_epithet_matched Taxonomic_status Accepted_scientific_name); \
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pg_export_tables_to_dir tnrs
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		cols=(Name_number Name_submitted Family_matched Name_matched
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Taxonomic_status Accepted_scientific_name); pg_export_tables_to_dir tnrs
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	)
23 22 
}
24 23 

  		












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