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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10267 over 11 years Aaron Marcuse-Kubitza backups/Makefile: %.backup/restore: documented ...
  bin 10348 over 11 years Aaron Marcuse-Kubitza bugfix: bin/repl: text mode: repurpose this to ...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10412 over 11 years Aaron Marcuse-Kubitza inputs/test_taxonomic_names/_scrub/TNRS_results...
  lib 10402 over 11 years Aaron Marcuse-Kubitza lib/sh/db.sh: mk_select(): support passing $col...
  mappings 10289 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki. Sp...
  planning 10415 over 11 years Aaron Marcuse-Kubitza planning/goals/BIEN_3_derived_data_products_Nor...
  schemas 10392 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: geoscrub_input_new: update...
  web 10306 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10223 over 11 years Aaron Marcuse-Kubitza /Makefile: mysql-Linux: also install mysql-work...
README.TXT 23.3 KB 10379 over 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: added instructions fo...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10415 07/25/2013 08:43 AM Aaron Marcuse-Kubitza

planning/goals/BIEN_3_derived_data_products_NormalizedDB_only.docx: removed BIEN species-level phylogeny, which Brad says is out of scope for the BIEN DB
10414 07/25/2013 08:24 AM Aaron Marcuse-Kubitza

removed planning/workflow/bien3_architecture.odp because the current version is now in bien3_architecture.pptx
10413 07/25/2013 08:13 AM Aaron Marcuse-Kubitza

added planning/workflow/validation/TNRS_results.ppt symlink to inputs/test_taxonomic_names/_scrub/TNRS_results.ppt
10412 07/25/2013 08:10 AM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/TNRS_results.ppt: highlighted the sample row and related rows
10411 07/25/2013 08:04 AM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/TNRS_results.xls: moved arrows to TNRS_results.ppt so they can be changed more easily
10410 07/25/2013 07:51 AM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/TNRS_results.ppt: TNRS.tnrs: added diagram labels for the various names and steps
10409 07/25/2013 07:32 AM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/TNRS_results.xls: use "Poa annua var. eriolepis"->"Poaceae Poa annua L." as the synonym example instead of "Poa annua fo. lanuginosa"->"Poaceae Poa annua var. annua" because the input name is simpler and it's closer to the beginning of the list
10408 07/25/2013 07:20 AM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/run: exports/make(): tnrs.csv: include Name_matched instead of Genus_matched+Specific_epithet_matched because this also contains lower ranks, which are used in the TNRS synonymizing
10407 07/25/2013 07:06 AM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/TNRS_results.ppt: added annotations explaining the import steps
10406 07/25/2013 06:36 AM Aaron Marcuse-Kubitza

added inputs/test_taxonomic_names/_scrub/TNRS_results.ppt, containing the *.png screenshots with tables labeled

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