Revision 10435
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/SpeciesLink/Specimen/map.csv | ||
|---|---|---|
| 7 | 7 |
dwc_dwcore_CollectionCode,collection,, |
| 8 | 8 |
dwc_dwcore_CatalogNumber,accessionNumber,, |
| 9 | 9 |
dwc_dwcore_Remarks,DUPLICATE#of:dwc_terms_occurrenceRemarks#dwc_dwcore_Remarks,,exact duplicate |
| 10 |
dwc_dwcore_ScientificName,taxonName,,
|
|
| 10 |
dwc_dwcore_ScientificName,scientificName,,
|
|
| 11 | 11 |
dwc_dwcore_Kingdom,kingdom,, |
| 12 | 12 |
dwc_dwcore_Phylum,phylum,, |
| 13 | 13 |
dwc_dwcore_Class,class,, |
| ... | ... | |
| 89 | 89 |
conceptual_darwin_2003_1_0_InstitutionCode,specimenHolderInstitutions,, |
| 90 | 90 |
conceptual_darwin_2003_1_0_CollectionCode,collection,, |
| 91 | 91 |
conceptual_darwin_2003_1_0_CatalogNumber,accessionNumber,, |
| 92 |
conceptual_darwin_2003_1_0_ScientificName,taxonName,,
|
|
| 92 |
conceptual_darwin_2003_1_0_ScientificName,scientificName,,
|
|
| 93 | 93 |
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,, |
| 94 | 94 |
conceptual_darwin_2003_1_0_Kingdom,kingdom,, |
| 95 | 95 |
conceptual_darwin_2003_1_0_Phylum,phylum,, |
| inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
|---|---|---|
| 77 | 77 |
dwc_dwcore_GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 78 | 78 |
dwc_terms_recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3/_alt/1", |
| 79 | 79 |
dwc_terms_fieldNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3/_alt/2","Usage inconsistent with DwC definition. This field instead means the same thing as recordNumber, and values are stored under either of the two terms." |
| 80 |
conceptual_darwin_2003_1_0_ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
|
| 81 |
dwc_dwcore_ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
|
| 80 | 82 |
dwc_terms_scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
| 81 |
conceptual_darwin_2003_1_0_ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3", |
|
| 82 |
dwc_dwcore_ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3", |
|
| 83 | 83 |
conceptual_darwin_2003_1_0_Collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
| 84 | 84 |
dwc_dwcore_Collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
| 85 | 85 |
dwc_terms_recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
| ... | ... | |
| 117 | 117 |
conceptual_darwin_2003_1_0_Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 118 | 118 |
dwc_dwcore_Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 119 | 119 |
dwc_terms_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| 120 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
|
| 121 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
|
| 120 | 122 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
| 121 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
|
| 122 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1, |
|
| 123 | 123 |
conceptual_darwin_2003_1_0_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value, |
| 124 | 124 |
dwc_dwcore_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value, |
| 125 | 125 |
dwc_terms_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value, |
| ... | ... | |
| 142 | 142 |
conceptual_darwin_2003_1_0_Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 143 | 143 |
dwc_dwcore_SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 144 | 144 |
dwc_terms_specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 145 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
|
| 146 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
|
| 145 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
|
|
| 146 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
|
|
| 147 | 147 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 148 | 148 |
dwc_terms_dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
| 149 | 149 |
conceptual_darwin_2003_1_0_DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| inputs/SpeciesLink/Specimen/test.xml.ref | ||
|---|---|---|
| 357 | 357 |
</prefix> |
| 358 | 358 |
<value> |
| 359 | 359 |
<_alt> |
| 360 |
<1>$dwc_terms_scientificName</1> |
|
| 360 |
<1> |
|
| 361 |
<_alt> |
|
| 362 |
<0>$conceptual_darwin_2003_1_0_ScientificName</0> |
|
| 363 |
<1>$dwc_dwcore_ScientificName</1> |
|
| 364 |
<2>$dwc_terms_scientificName</2> |
|
| 365 |
</_alt> |
|
| 366 |
</1> |
|
| 361 | 367 |
<2> |
| 362 | 368 |
<_join_words> |
| 363 | 369 |
<1> |
| 364 |
<_alt> |
|
| 365 |
<1> |
|
| 366 |
<_alt> |
|
| 367 |
<0>$conceptual_darwin_2003_1_0_ScientificName</0> |
|
| 368 |
<1>$dwc_dwcore_ScientificName</1> |
|
| 369 |
</_alt> |
|
| 370 |
</1> |
|
| 370 |
<_join_words> |
|
| 371 | 371 |
<2> |
| 372 |
<_join_words> |
|
| 373 |
<2> |
|
| 374 |
<_filter_genus> |
|
| 375 |
<value> |
|
| 376 |
<_alt> |
|
| 377 |
<0>$conceptual_darwin_2003_1_0_Genus</0> |
|
| 378 |
<1>$dwc_dwcore_Genus</1> |
|
| 379 |
<2>$dwc_terms_genus</2> |
|
| 380 |
</_alt> |
|
| 381 |
</value> |
|
| 382 |
</_filter_genus> |
|
| 383 |
</2> |
|
| 384 |
<3> |
|
| 372 |
<_filter_genus> |
|
| 373 |
<value> |
|
| 385 | 374 |
<_alt> |
| 386 |
<0>$conceptual_darwin_2003_1_0_Species</0>
|
|
| 387 |
<1>$dwc_dwcore_SpecificEpithet</1>
|
|
| 388 |
<2>$dwc_terms_specificEpithet</2>
|
|
| 375 |
<0>$conceptual_darwin_2003_1_0_Genus</0>
|
|
| 376 |
<1>$dwc_dwcore_Genus</1>
|
|
| 377 |
<2>$dwc_terms_genus</2>
|
|
| 389 | 378 |
</_alt> |
| 390 |
</3> |
|
| 391 |
<4>$conceptual_darwin_2003_1_0_Subspecies</4> |
|
| 392 |
<5> |
|
| 393 |
<_alt> |
|
| 394 |
<0>$dwc_dwcore_InfraspecificEpithet</0> |
|
| 395 |
<1>$dwc_terms_infraspecificEpithet</1> |
|
| 396 |
</_alt> |
|
| 397 |
</5> |
|
| 398 |
</_join_words> |
|
| 379 |
</value> |
|
| 380 |
</_filter_genus> |
|
| 399 | 381 |
</2> |
| 400 |
</_alt> |
|
| 382 |
<3> |
|
| 383 |
<_alt> |
|
| 384 |
<0>$conceptual_darwin_2003_1_0_Species</0> |
|
| 385 |
<1>$dwc_dwcore_SpecificEpithet</1> |
|
| 386 |
<2>$dwc_terms_specificEpithet</2> |
|
| 387 |
</_alt> |
|
| 388 |
</3> |
|
| 389 |
<4>$conceptual_darwin_2003_1_0_Subspecies</4> |
|
| 390 |
<5> |
|
| 391 |
<_alt> |
|
| 392 |
<0>$dwc_dwcore_InfraspecificEpithet</0> |
|
| 393 |
<1>$dwc_terms_infraspecificEpithet</1> |
|
| 394 |
</_alt> |
|
| 395 |
</5> |
|
| 396 |
</_join_words> |
|
| 401 | 397 |
</1> |
| 402 | 398 |
<2>$dwc_terms_scientificNameAuthorship</2> |
| 403 | 399 |
</_join_words> |
| ... | ... | |
| 430 | 426 |
<2>$dwc_terms_specificEpithet</2> |
| 431 | 427 |
</_alt> |
| 432 | 428 |
</specific_epithet> |
| 433 |
<taxonname> |
|
| 429 |
<taxonomicname>
|
|
| 434 | 430 |
<_alt> |
| 435 | 431 |
<0>$conceptual_darwin_2003_1_0_ScientificName</0> |
| 436 | 432 |
<1>$dwc_dwcore_ScientificName</1> |
| 433 |
<2>$dwc_terms_scientificName</2> |
|
| 437 | 434 |
</_alt> |
| 438 |
</taxonname> |
|
| 439 |
<taxonomicname>$dwc_terms_scientificName</taxonomicname> |
|
| 435 |
</taxonomicname> |
|
| 440 | 436 |
</taxonverbatim> |
| 441 | 437 |
</taxonverbatim_id> |
| 442 | 438 |
<determinationdate> |
| inputs/SpeciesLink/Specimen/new_terms.csv | ||
|---|---|---|
| 5 | 5 |
dwc_dwcore_CollectionCode,collection,, |
| 6 | 6 |
dwc_dwcore_CatalogNumber,accessionNumber,, |
| 7 | 7 |
dwc_dwcore_Remarks,DUPLICATE#of:dwc_terms_occurrenceRemarks#dwc_dwcore_Remarks,,exact duplicate |
| 8 |
dwc_dwcore_ScientificName,taxonName,,
|
|
| 8 |
dwc_dwcore_ScientificName,scientificName,,
|
|
| 9 | 9 |
dwc_dwcore_Kingdom,kingdom,, |
| 10 | 10 |
dwc_dwcore_Phylum,phylum,, |
| 11 | 11 |
dwc_dwcore_Class,class,, |
| ... | ... | |
| 84 | 84 |
conceptual_darwin_2003_1_0_InstitutionCode,specimenHolderInstitutions,, |
| 85 | 85 |
conceptual_darwin_2003_1_0_CollectionCode,collection,, |
| 86 | 86 |
conceptual_darwin_2003_1_0_CatalogNumber,accessionNumber,, |
| 87 |
conceptual_darwin_2003_1_0_ScientificName,taxonName,,
|
|
| 87 |
conceptual_darwin_2003_1_0_ScientificName,scientificName,,
|
|
| 88 | 88 |
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,, |
| 89 | 89 |
conceptual_darwin_2003_1_0_Kingdom,kingdom,, |
| 90 | 90 |
conceptual_darwin_2003_1_0_Phylum,phylum,, |
Also available in: Unified diff
bugfix: inputs/SpeciesLink/Specimen/map.csv: *scientificName: remapped to scientificName instead of taxonName to match the DwC term's name (this is the same dwc_terms_scientificName mismapping that was fixed in r10434)