Project

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1
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[bien.datasource=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy,,89
3
coordinatePrecision/_noCV/value,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
4
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
5
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
6
bien.datasource,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/*_id/reference/shortname/_alt/1,,
7
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63
8
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65
9
county,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination(/*_id/namedplace[placesystem=county])/placename,,66
10
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
11
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,85
12
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/latitude/_alt/2/_nullIf:[null=0,type=float]/value",,81
13
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,86
14
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationdetermination[!namedplace_id]/longitude/_alt/2/_nullIf:[null=0,type=float]/value",,82
15
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationnarrative/_alt/1,,68
16
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location:[*_id/reference/shortname/_alt/2=$/_ignore/inLabel]/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
17
habitat,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
18
habitat/_merge/1,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/1,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
19
habitat/_merge/2,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/2,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
20
bien.substrate,/*_id/taxonoccurrence/*_id/locationevent/landscapenarrative,,
21
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
22
eventDate/_alt/1/_*/date,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_*/date,,44
23
eventDate/_alt/2/_date/day,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/day,,44
24
eventDate/_alt/2/_date/month,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/month,,44
25
eventDate/_alt/2/_date/year,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year,,44
26
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
27
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
28
sex,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
29
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate",,120
30
dateIdentified/_alt/1/_*/date,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/1/_*/date",,120
31
dateIdentified/_alt/2/_date/day,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/day",,120
32
dateIdentified/_alt/2/_date/month,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/month",,120
33
dateIdentified/_alt/2/_date/year,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/year",,120
34
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
35
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?",134
36
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
37
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
38
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
39
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
40
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
41
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
42
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
43
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
44
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
45
fieldNotes,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54
46
catalogNumber,:[*_id/reference]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
47
recordNumber,:[*_id/reference]/collectionnumber/_alt/1,,22
48
collectionID,:[*_id/reference]/collectionnumber/_alt/2,,9
49
fieldNumber,:[*_id/reference]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
50
bien.specimenDescription,:[*_id/reference]/description,,
51
bien.specimenDescription/_merge/1,:[*_id/reference]/description/_merge/1,,
52
"bien.specimenDescription/_merge/2/_label[label=""plant fungus""]/value",":[*_id/reference]/description/_merge/2/_label[label=""plant fungus""]/value",,
53
occurrenceID,:[*_id/reference]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
54
recordedBy,:[*_id/reference]/verbatimcollectorname,,23
55
institutionCode,:[*_id/reference]/{museum_id/party/organizationname/_name/first},,11
56
collectionCode,":[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
57
acceptedNameUsage,,,135
58
acceptedNameUsageID,,,128
59
associatedMedia,,,36
60
associatedOccurrences,,,38
61
associatedReferences,,,37
62
associatedSequences,,,39
63
associatedTaxa,,,40
64
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
65
bed,,,117
66
behavior,,,29
67
continent,,Brad: OMIT,59
68
coordinateUncertaintyInMeters,,,88
69
countryCode,,,64
70
dataGeneralizations,,,17
71
datasetID,,,10
72
datasetName,,,13
73
day,,Brad: OMIT,50
74
dcterms:accessRights,,,5
75
dcterms:bibliographicCitation,,,6
76
dcterms:language,,,2
77
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
78
dcterms:references,,,7
79
dcterms:rights,,,3
80
dcterms:rightsHolder,,,4
81
dcterms:type,,,0
82
disposition,,,33
83
dynamicProperties,,,18
84
earliestAgeOrLowestStage,,,109
85
earliestEonOrLowestEonothem,,,101
86
earliestEpochOrLowestSeries,,,107
87
earliestEraOrLowestErathem,,,103
88
earliestPeriodOrLowestSystem,,,105
89
endDayOfYear,,,47
90
establishmentMeans,,,30
91
eventID,,,41
92
eventRemarks,,,55
93
eventTime,,Brad: OMIT,45
94
footprintSRS,,,92
95
footprintSpatialFit,,,93
96
formation,,,115
97
geodeticDatum,,,87
98
geologicalContextID,,,100
99
georeferenceProtocol,,,96
100
georeferenceRemarks,,,99
101
georeferenceSources,,,97
102
georeferenceVerificationStatus,,,98
103
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
104
georeferencedDate,,,95
105
group,,,114
106
higherClassification,,,141
107
higherGeography,,,58
108
higherGeographyID,,,57
109
highestBiostratigraphicZone,,,112
110
identificationID,,,118
111
identificationQualifier,,,124
112
identificationReferences,,,121
113
identificationRemarks,,,123
114
identificationVerificationStatus,,,122
115
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
116
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
117
informationWithheld,,,16
118
institutionID,,,8
119
island,,,62
120
islandGroup,,,61
121
latestAgeOrHighestStage,,,110
122
latestEonOrHighestEonothem,,,102
123
latestEpochOrHighestSeries,,,108
124
latestEraOrHighestErathem,,,104
125
latestPeriodOrHighestSystem,,,106
126
lifeStage,,,27
127
lithostratigraphicTerms,,,113
128
locationAccordingTo,,,78
129
locationID,,,56
130
locationRemarks,,,79
131
lowestBiostratigraphicZone,,,111
132
maximumDistanceAboveSurfaceInMeters,,,77
133
measurementAccuracy,,,169
134
measurementDeterminedBy,,,172
135
measurementDeterminedDate,,,171
136
measurementID,,,166
137
measurementMethod,,,173
138
measurementRemarks,,,174
139
measurementType,,,167
140
measurementUnit,,,170
141
measurementValue,,,168
142
member,,,116
143
minimumDistanceAboveSurfaceInMeters,,,76
144
month,,,49
145
municipality,,,67
146
nameAccordingTo,,,138
147
nameAccordingToID,,,131
148
namePublishedIn,,,139
149
namePublishedInID,,,132
150
namePublishedInYear,,,140
151
nomenclaturalCode,,,155
152
nomenclaturalStatus,,,157
153
occurrenceRemarks,,,21
154
occurrenceStatus,,,31
155
originalNameUsage,,,137
156
originalNameUsageID,,,130
157
otherCatalogNumbers,,,34
158
ownerInstitutionCode,,,14
159
parentNameUsage,,,136
160
parentNameUsageID,,,129
161
pointRadiusSpatialFit,,,90
162
preparations,,Brad: OMIT,32
163
previousIdentifications,,Brad: OMIT,35
164
relatedResourceID,,Brad: OMIT,161
165
relationshipAccordingTo,,,163
166
relationshipEstablishedDate,,,164
167
relationshipOfResource,,Brad: OMIT,162
168
relationshipRemarks,,,165
169
reproductiveCondition,,,28
170
resourceID,,,160
171
resourceRelationshipID,,,159
172
samplingEffort,,,43
173
samplingProtocol,,,42
174
scientificNameID,,,127
175
startDayOfYear,,,46
176
subgenus,,,148
177
taxonConceptID,,,133
178
taxonID,,,126
179
taxonRank,,,151
180
taxonRemarks,,,158
181
taxonomicStatus,,,156
182
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
183
verbatimCoordinateSystem,,,83
184
verbatimCoordinates,,,80
185
verbatimDepth,,,73
186
verbatimElevation,,,70
187
verbatimEventDate,,,51
188
verbatimSRS,,,84
189
verbatimTaxonRank,,,152
190
vernacularName,,,154
191
waterBody,,,60
192
year,,,48
(3-3/8)