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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10267 over 11 years Aaron Marcuse-Kubitza backups/Makefile: %.backup/restore: documented ...
  bin 10448 over 11 years Aaron Marcuse-Kubitza bin/my2pg: use s!...!...! when either the regex...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10444 over 11 years Aaron Marcuse-Kubitza bin/my2pg: comment out COMMENTs instead of remo...
  lib 10446 over 11 years Aaron Marcuse-Kubitza lib/sh/db.sh: mysqldump(): don't use --compatib...
  mappings 10420 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki. ad...
  planning 10467 over 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 10490 over 11 years Aaron Marcuse-Kubitza schemas/VegCore/VegCore.ERD.mwb: specimen_obser...
  web 10306 over 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10223 over 11 years Aaron Marcuse-Kubitza /Makefile: mysql-Linux: also install mysql-work...
README.TXT 23.3 KB 10379 over 11 years Aaron Marcuse-Kubitza /README.TXT: Maintenance: added instructions fo...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10490 07/30/2013 02:45 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: specimen_observation: added description (vegcore.vegpath.org?specimenDescription). taxon_presence: added occurrence_status (vegcore.vegpath.org?occurrenceStatus). stem_observation, aggregate_observation: made room for them to expand with additional first-class fields.

10489 07/30/2013 02:22 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: taxon_presence, taxon_absence: inherit from taxon_determination rather than taxon_observation, so that the taxon_determination's taxon can be used as the identifying taxon (i.e. the authorPlantName, VegCore.vegpath.org?authorPlantName)

10488 07/30/2013 01:41 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: taxon_determination: inherit from taxon_observation again because now that redeterminations can only occur on reobservable things, it makes sense to only allow one taxon_determination per observation event. this means that each redetermination on a specimen would get its own taxon_observation (where any additional attributes noted in the reobservation could also be included).

10487 07/30/2013 01:31 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: taxon_occurrence: renamed to reobservable to emphasize that this is only for things on which taxon redeterminations can be made, such as individuals and specimens (including voucher specimens). a redetermination on an aggregate_observation would instead be made on its voucher specimen, which is the only reobservable part of it.

10486 07/30/2013 01:07 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: moved taxon_observation subclasses closer to taxon_observation so that it would be clear they were observation-related rather than occurrence-related (e.g. there is no concept of "repeat-sampling" of an aggregate_observation, because each sampling it is the collector's opinion that the plants correspond to a particular taxon)

10485 07/30/2013 02:00 AM Aaron Marcuse-Kubitza

bugfix: schemas/VegCore/VegCore.ERD.png: switched back to attaching the sRGB color profile directly, because actually, the native->sRGB translation happens in the monitor driver itself (and can be adjusted in System Preferences > Displays > Color), rather than in the specific application. this means that the hex color values color-matched in MySQL Workbench were actually sRGB (translated by the OS to monitor-native for display), and that the sRGB profile merely needed to be explicitly indicated for other monitors that are not close to sRGB (and thus need the translation). the closeness of the 27-inch iMac screen to sRGB can be verified by selecting sRGB in System Preferences > Displays > Color, and noting that the desktop background does not change from when the default "iMac" setting is selected.

10484 07/30/2013 01:38 AM Aaron Marcuse-Kubitza

bugfix: schemas/VegCore/VegCore.ERD.png: convert to sRGB color profile after attaching the native monitor profile instead of attaching it directly. this allows the hex colors that were color-matched in MySQL Workbench (which presumably uses raw monitor RGB) to be translated to the universal sRGB space, where they can then be localized to a different monitor's local color space. note that this does not visibly change the image on the 27-inch iMac screen from what was produced via the previous, incorrect method (attaching the sRGB profile without conversion from native), which would imply that the iMac's screen is very close to the sRGB color space already. if this is the case, it is instead older LCDs that have off-white color spaces that need translation from sRGB.

10483 07/29/2013 11:39 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.png: attached sRGB color profile using Gimp (gimp.org), so that the colors don't look completely washed out and off-hue on older LCDs (i.e. other than the 27-inch iMac screen)

10482 07/27/2013 12:13 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: regenerated exports

10481 07/27/2013 12:09 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: added separate geo category (turquoise) to visually distinguish the broader geoplace tables from the more specific plot tables. (note that georeferencing is actually a plot table despite geo- in its name, because it assigns a geoplace to a plot.)

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