| 1 |
7555
|
aaronmk
|
HVAA,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
| 2 |
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|
catalogNumber,"/_if[@name=""if specimen""]/cond/_exists",
|
| 3 |
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symbiotaId,"/_if[@name=""if specimen""]/cond/_exists",
|
| 4 |
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institutionCode,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
|
| 5 |
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|
symbiotaId,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1",
|
| 6 |
|
|
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
|
| 7 |
|
|
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
| 8 |
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|
symbiotaId,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
| 9 |
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|
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",
|
| 10 |
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collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
|
| 11 |
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catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
|
| 12 |
|
|
rights,/location/accessconditions,
|
| 13 |
|
|
accessRights,/location/accesslevel,
|
| 14 |
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verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
|
| 15 |
7703
|
aaronmk
|
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/1,
|
| 16 |
|
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maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/2,
|
| 17 |
7555
|
aaronmk
|
fieldNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 18 |
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|
recordNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 19 |
|
|
symbiotaId,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 20 |
|
|
locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
|
| 21 |
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habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
|
| 22 |
|
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samplingProtocol,/location/locationevent/*_id/method/name,
|
| 23 |
|
|
dateIdentified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
|
| 24 |
|
|
taxonRemarks,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/notes",
|
| 25 |
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|
identificationQualifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
|
| 26 |
10425
|
aaronmk
|
eventDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
|
| 27 |
|
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day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
| 28 |
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|
month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
| 29 |
|
|
year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
| 30 |
7555
|
aaronmk
|
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
|
| 31 |
10531
|
aaronmk
|
occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
| 32 |
7555
|
aaronmk
|
fieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
| 33 |
|
|
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
| 34 |
|
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sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
|
| 35 |
7610
|
aaronmk
|
reproductiveCondition,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
|
| 36 |
7555
|
aaronmk
|
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
| 37 |
7712
|
aaronmk
|
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
| 38 |
7555
|
aaronmk
|
fieldNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
| 39 |
|
|
recordNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
| 40 |
|
|
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
| 41 |
|
|
symbiotaId,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
| 42 |
|
|
institutionCode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",
|
| 43 |
|
|
institutionCode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",
|
| 44 |
|
|
symbiotaId,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
|
| 45 |
|
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fieldNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
| 46 |
|
|
recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
| 47 |
|
|
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
|
| 48 |
|
|
recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
| 49 |
|
|
fieldNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 50 |
|
|
recordNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 51 |
|
|
symbiotaId,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 52 |
|
|
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value",
|
| 53 |
|
|
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",
|
| 54 |
|
|
symbiotaId,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
|
| 55 |
|
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
|
| 56 |
|
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
|
| 57 |
|
|
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
| 58 |
|
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
| 59 |
|
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
| 60 |
|
|
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
| 61 |
|
|
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank,
|
| 62 |
|
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank",
|
| 63 |
|
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
| 64 |
|
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
|
| 65 |
9882
|
aaronmk
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,
|
| 66 |
7555
|
aaronmk
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
| 67 |
|
|
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
| 68 |
|
|
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
| 69 |
|
|
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
|
| 70 |
|
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
|
| 71 |
|
|
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
| 72 |
|
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
| 73 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
| 74 |
|
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
| 75 |
|
|
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
|
| 76 |
|
|
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank,
|
| 77 |
|
|
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
|
| 78 |
|
|
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
|
| 79 |
|
|
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
|
| 80 |
|
|
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
| 81 |
|
|
fieldNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
| 82 |
|
|
recordNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
| 83 |
|
|
locality,/location/locationnarrative/_merge/1,
|
| 84 |
|
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
| 85 |
8078
|
aaronmk
|
locationRemarks,/location/locationnarrative/_merge/4,
|
| 86 |
7555
|
aaronmk
|
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
|
| 87 |
|
|
footprintWKT,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
|
| 88 |
|
|
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
|
| 89 |
|
|
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
|
| 90 |
|
|
verbatimCoordinates,/location/locationplace/*_id/place/*_id/coordinates/verbatimcoordinates,
|
| 91 |
|
|
country,/location/locationplace/*_id/place/country,
|
| 92 |
|
|
county,/location/locationplace/*_id/place/county,
|
| 93 |
|
|
decimalLatitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 94 |
|
|
decimalLongitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 95 |
|
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
| 96 |
|
|
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
| 97 |
|
|
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
| 98 |
|
|
stateProvince,/location/locationplace/*_id/place/stateprovince,
|
| 99 |
|
|
verbatimElevation,/location/verbatimelevation,
|
| 100 |
|
|
associatedTaxa,,** No join mapping for associatedTaxa **
|
| 101 |
|
|
basisOfRecord,,** No join mapping for basisOfRecord **
|
| 102 |
10257
|
aaronmk
|
coordinatePrecision,,** No non-empty join mapping for UNUSED#coordinatePrecision **
|
| 103 |
7555
|
aaronmk
|
disposition,,** No join mapping for disposition **
|
| 104 |
10531
|
aaronmk
|
dynamicProperties,,** No join mapping for occurrenceRemarks_from_dynamicProperties ** Contains occurrenceRemarks data
|
| 105 |
7555
|
aaronmk
|
endDayOfYear,,** No join mapping for endDayOfYear **
|
| 106 |
10257
|
aaronmk
|
fieldNotes,,** No non-empty join mapping for UNUSED#fieldNotes **
|
| 107 |
7555
|
aaronmk
|
geodeticDatum,,** No join mapping for geodeticDatum **
|
| 108 |
|
|
georeferenceProtocol,,** No join mapping for georeferenceProtocol **
|
| 109 |
|
|
georeferenceRemarks,,** No join mapping for georeferenceRemarks **
|
| 110 |
|
|
georeferenceSources,,** No join mapping for georeferenceSources **
|
| 111 |
|
|
georeferenceVerificationStatus,,** No join mapping for georeferenceVerificationStatus **
|
| 112 |
|
|
georeferencedBy,,** No join mapping for georeferencedBy **
|
| 113 |
|
|
identificationReferences,,** No join mapping for identificationReferences **
|
| 114 |
|
|
identificationRemarks,,** No join mapping for identificationRemarks **
|
| 115 |
|
|
language,,** No join mapping for language **
|
| 116 |
|
|
lifeStage,,** No join mapping for lifeStage **
|
| 117 |
|
|
modified,,** No join mapping for modified **
|
| 118 |
|
|
municipality,,** No join mapping for municipality **
|
| 119 |
10531
|
aaronmk
|
occurrenceRemarks,,** No join mapping for occurrenceRemarks_from_occurrenceRemarks **
|
| 120 |
7555
|
aaronmk
|
otherCatalogNumbers,,** No join mapping for otherCatalogNumbers **
|
| 121 |
7646
|
aaronmk
|
ownerInstitutionCode,,** No join mapping for specimenOwner **
|
| 122 |
7555
|
aaronmk
|
preparations,,** No join mapping for preparations **
|
| 123 |
7663
|
aaronmk
|
rightsHolder,,** No join mapping for dataOwners **
|
| 124 |
10209
|
aaronmk
|
row_num,,** No join mapping for *row_num **
|
| 125 |
7555
|
aaronmk
|
startDayOfYear,,** No join mapping for startDayOfYear **
|
| 126 |
|
|
typeStatus,,** No join mapping for typeStatus **
|
| 127 |
7809
|
aaronmk
|
verbatimCoordinateSystem,,** No join mapping for coordinateUnits **
|
| 128 |
7555
|
aaronmk
|
verbatimEventDate,,** No join mapping for verbatimEventDate **
|
