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Profile

1 1043 aaronmk
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[bien.datasource=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2 1052 aaronmk
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63
3
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65
4
county,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=county])/placename,,66
5 1025 aaronmk
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy,,89
6
coordinatePrecision/_noCV/value,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
7 1052 aaronmk
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
8
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/latitude/_alt/1/_nullIf:[null=0,type=float]/value",,85
9
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/latitude/_alt/2/_nullIf:[null=0,type=float]/value",,81
10
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/longitude/_alt/1/_nullIf:[null=0,type=float]/value",,86
11
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/longitude/_alt/2/_nullIf:[null=0,type=float]/value",,82
12
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_alt/1,,68
13
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
14 896 aaronmk
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
15
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
16 1044 aaronmk
habitat,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
17
habitat/_merge/1,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/1,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
18
habitat/_merge/2,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/2,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
19 970 aaronmk
bien.substrate,/*_id/taxonoccurrence/*_id/locationevent/landscapenarrative,,
20 896 aaronmk
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
21
eventDate/_alt/1/_*/date,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_*/date,,44
22
eventDate/_alt/2/_date/day,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/day,,44
23
eventDate/_alt/2/_date/month,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/month,,44
24
eventDate/_alt/2/_date/year,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year,,44
25
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
26
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
27
sex,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
28
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate",,120
29
dateIdentified/_alt/1/_*/date,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/1/_*/date",,120
30
dateIdentified/_alt/2/_date/day,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/day",,120
31
dateIdentified/_alt/2/_date/month,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/month",,120
32
dateIdentified/_alt/2/_date/year,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/year",,120
33
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
34
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?",134
35
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
36
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
37
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
38
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
39
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
40
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
41
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
42
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
43 914 aaronmk
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
44 1050 aaronmk
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23
45 1052 aaronmk
fieldNotes,/description,,
46
fieldNotes/_merge/1,/description/_merge/1,,
47
"fieldNotes/_merge/2/_label[label=""plant fungus""]/value","/description/_merge/2/_label[label=""plant fungus""]/value",,
48
institutionCode,/{museum_id/party/organizationname/_name/first},,11
49
collectionCode,"/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
50 1053 aaronmk
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
51
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
52
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
53
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
54
bien.datasource,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,
55
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
56 896 aaronmk
acceptedNameUsage,,,135
57
acceptedNameUsageID,,,128
58
associatedMedia,,,36
59
associatedOccurrences,,,38
60
associatedReferences,,,37
61
associatedSequences,,,39
62
associatedTaxa,,,40
63
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
64
bed,,,117
65
behavior,,,29
66
continent,,Brad: OMIT,59
67
coordinateUncertaintyInMeters,,,88
68
countryCode,,,64
69
dataGeneralizations,,,17
70
datasetID,,,10
71
datasetName,,,13
72
day,,Brad: OMIT,50
73
dcterms:accessRights,,,5
74
dcterms:bibliographicCitation,,,6
75
dcterms:language,,,2
76
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
77
dcterms:references,,,7
78
dcterms:rights,,,3
79
dcterms:rightsHolder,,,4
80
dcterms:type,,,0
81
disposition,,,33
82
dynamicProperties,,,18
83
earliestAgeOrLowestStage,,,109
84
earliestEonOrLowestEonothem,,,101
85
earliestEpochOrLowestSeries,,,107
86
earliestEraOrLowestErathem,,,103
87
earliestPeriodOrLowestSystem,,,105
88
endDayOfYear,,,47
89
establishmentMeans,,,30
90
eventID,,,41
91
eventRemarks,,,55
92
eventTime,,Brad: OMIT,45
93
footprintSRS,,,92
94
footprintSpatialFit,,,93
95
formation,,,115
96
geodeticDatum,,,87
97
geologicalContextID,,,100
98
georeferenceProtocol,,,96
99
georeferenceRemarks,,,99
100
georeferenceSources,,,97
101
georeferenceVerificationStatus,,,98
102 915 aaronmk
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
103 896 aaronmk
georeferencedDate,,,95
104
group,,,114
105
higherClassification,,,141
106
higherGeography,,,58
107
higherGeographyID,,,57
108
highestBiostratigraphicZone,,,112
109
identificationID,,,118
110
identificationQualifier,,,124
111
identificationReferences,,,121
112
identificationRemarks,,,123
113
identificationVerificationStatus,,,122
114
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
115 915 aaronmk
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
116 896 aaronmk
informationWithheld,,,16
117
institutionID,,,8
118
island,,,62
119
islandGroup,,,61
120
latestAgeOrHighestStage,,,110
121
latestEonOrHighestEonothem,,,102
122
latestEpochOrHighestSeries,,,108
123
latestEraOrHighestErathem,,,104
124
latestPeriodOrHighestSystem,,,106
125
lifeStage,,,27
126
lithostratigraphicTerms,,,113
127
locationAccordingTo,,,78
128
locationID,,,56
129
locationRemarks,,,79
130
lowestBiostratigraphicZone,,,111
131
maximumDistanceAboveSurfaceInMeters,,,77
132
measurementAccuracy,,,169
133
measurementDeterminedBy,,,172
134
measurementDeterminedDate,,,171
135
measurementID,,,166
136
measurementMethod,,,173
137
measurementRemarks,,,174
138
measurementType,,,167
139
measurementUnit,,,170
140
measurementValue,,,168
141
member,,,116
142
minimumDistanceAboveSurfaceInMeters,,,76
143
month,,,49
144
municipality,,,67
145
nameAccordingTo,,,138
146
nameAccordingToID,,,131
147
namePublishedIn,,,139
148
namePublishedInID,,,132
149
namePublishedInYear,,,140
150
nomenclaturalCode,,,155
151
nomenclaturalStatus,,,157
152
occurrenceRemarks,,,21
153
occurrenceStatus,,,31
154
originalNameUsage,,,137
155
originalNameUsageID,,,130
156
otherCatalogNumbers,,,34
157
ownerInstitutionCode,,,14
158
parentNameUsage,,,136
159
parentNameUsageID,,,129
160
pointRadiusSpatialFit,,,90
161
preparations,,Brad: OMIT,32
162
previousIdentifications,,Brad: OMIT,35
163
relatedResourceID,,Brad: OMIT,161
164
relationshipAccordingTo,,,163
165
relationshipEstablishedDate,,,164
166
relationshipOfResource,,Brad: OMIT,162
167
relationshipRemarks,,,165
168
reproductiveCondition,,,28
169
resourceID,,,160
170
resourceRelationshipID,,,159
171
samplingEffort,,,43
172
samplingProtocol,,,42
173
scientificNameID,,,127
174
startDayOfYear,,,46
175
subgenus,,,148
176
taxonConceptID,,,133
177
taxonID,,,126
178
taxonRank,,,151
179
taxonRemarks,,,158
180
taxonomicStatus,,,156
181
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
182
verbatimCoordinateSystem,,,83
183
verbatimCoordinates,,,80
184
verbatimDepth,,,73
185
verbatimElevation,,,70
186
verbatimEventDate,,,51
187
verbatimSRS,,,84
188
verbatimTaxonRank,,,152
189
vernacularName,,,154
190
waterBody,,,60
191
year,,,48