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Revision 10621

Added by Aaron Marcuse-Kubitza over 11 years ago

inputs/TEX/Specimen2/map.csv: MISC NOTES: remapped to locationRemarks since these primarily relate to the coords. PLANT DATA: remapped to occurrenceRemarks since this is the specimenDescription.

View differences:

inputs/TEX/Specimen2/map.csv
14 14 
COUNTY,county,,
15 15 
LOCALITY,locality,,
16 16 
VEGETATION,habitat,,
17 
PLANT DATA,occurrenceRemarks,/_join/1,
17 
PLANT DATA,occurrenceRemarks,, = specimenDescription
18 18 
ELEVATION,verbatimElevation,,
19 19 
LATITUDE,latitude_DMS,,
20 20 
LONGITUDE,longitude_DMS,,
......
35 35 
LATLONG SOURCE,*LATLONG SOURCE,,
36 36 
LATLONG DATUM,*LATLONG DATUM,,
37 37 
DATABASED BY,*DATABASED BY,,
38 
MISC NOTES,occurrenceRemarks,/_join/2,
38 
MISC NOTES,locationRemarks,,
39 39 
UTM,*UTM,,
40 40 
ORIGIN,establishmentMeans,,
41 41 
PHENOLOGY,reproductiveCondition,,
inputs/TEX/Specimen2/VegBIEN.csv
7 7 
DET DATE,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
8 8 
EXACT DATE,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/1,
9 9 
GENERAL DATE,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/2,
10 
PLANT DATA,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/1,
11 
MISC NOTES,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/2,
10 
PLANT DATA,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1, = specimenDescription
12 11 
COLLECTOR NUMBER,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
13 12 
PHENOLOGY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
14 13 
HERBARIUM,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
......
48 47 
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
49 48 
LOCALITY,/location/locationnarrative/_merge/1,
50 49 
VEGETATION,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
50 
MISC NOTES,/location/locationnarrative/_merge/4,
51 51 
LATITUDE,/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_dms_to_dd/value,
52 52 
LONGITUDE,/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_dms_to_dd/value,
53 53 
LATITUDE,/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude,
inputs/TEX/Specimen2/test.xml.ref
33 33 
                                            <2>$GENERAL DATE</2>
34 34 
                                        </_alt>
35 35 
                                    </collectiondate>
36 
                                    <notes>
37 
                                        <_join>
38 
                                            <1>$PLANT DATA</1>
39 
                                            <2>$MISC NOTES</2>
40 
                                        </_join>
41 
                                    </notes>
36 
                                    <notes>$PLANT DATA</notes>
42 37 
                                    <plantobservation>
43 38 
                                        <authorplantcode>$COLLECTOR NUMBER</authorplantcode>
44 39 
                                        <reproductivecondition>$PHENOLOGY</reproductivecondition>
......
205 200 
                                        <value>$VEGETATION</value>
206 201 
                                    </_label>
207 202 
                                </3>
203 
                                <4>$MISC NOTES</4>
208 204 
                            </_merge>
209 205 
                        </locationnarrative>
210 206 
                        <locationplace>
inputs/TEX/Specimen2/new_terms.csv
1 1 
HERBARIUM,collection,,
2 2 
SPECIES AUTHORITY,scientificNameAuthorship,,
3 3 
VEGETATION,habitat,,
4 
PLANT DATA,occurrenceRemarks,/_join/1,
4 
PLANT DATA,occurrenceRemarks,, = specimenDescription
5 5 
EXACT DATE,dateCollected,/_alt/1,
6 6 
GENERAL DATE,dateCollected,/_alt/2,
7 7 
COLLECTOR 1 FIRST NAME,recordedBy,/_join/1/_join_words/1,
......
14 14 
COLLECTOR 4 LAST NAME,recordedBy,/_join/4/_join_words/2,
15 15 
COLLECTOR 5 FIRST NAME,recordedBy,/_join/5/_join_words/1,
16 16 
COLLECTOR 5 LAST NAME,recordedBy,/_join/5/_join_words/2,
17 
MISC NOTES,occurrenceRemarks,/_join/2,
17 
MISC NOTES,locationRemarks,,
18 18 
ORIGIN,establishmentMeans,,
19 19 
DETERMINER FIRST NAME,identifiedBy,,
20 20 
DETERMINER LAST NAME,identifiedBy,,

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