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Revision 10689

Added by Aaron Marcuse-Kubitza over 11 years ago

inputs/VegBank/taxonobservation_/map.csv: Species and lower ranks: remapped to EQUIV#to:plantname because these contain the taxonomic name at specific ranks, but plantname contains the taxonomic name of the plant itself, which is longer and populated more often

View differences:

inputs/VegBank/taxonobservation_/map.csv
59 59 
Order,order,,
60 60 
Family,family,,
61 61 
Genus,genus,,includes genus author
62 
Species,scientificName,/_alt/3/_alt/4,*full* taxonomic name at that rank
63 
Subspecies,scientificName,/_alt/3/_alt/3,*full* taxonomic name at that rank
64 
Variety,scientificName,/_alt/3/_alt/2,*full* taxonomic name at that rank
65 
Forma,scientificName,/_alt/3/_alt/1,*full* taxonomic name at that rank
62 
Species,EQUIV#to:plantname#Species,,*full* taxonomic name at that rank
63 
Subspecies,EQUIV#to:plantname#Subspecies,,*full* taxonomic name at that rank
64 
Variety,EQUIV#to:plantname#Variety,,*full* taxonomic name at that rank
65 
Forma,EQUIV#to:plantname#Forma,,*full* taxonomic name at that rank
66 66 
plantname,scientificName,/_alt/2/_alt/2,
67 67 
plantname_reference_id,*plantname_reference_id,,
68 68 
dateentered,*dateentered,,
inputs/VegBank/taxonobservation_/VegBIEN.csv
24 24 
int_currplantscifull,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/1",
25 25 
plantname,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/2/_alt/1","when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
26 26 
plantname,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/2/_alt/2",
27 
Forma,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/3/_alt/1",*full* taxonomic name at that rank
28 
Variety,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/3/_alt/2",*full* taxonomic name at that rank
29 
Subspecies,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/3/_alt/3",*full* taxonomic name at that rank
30 
Species,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/3/_alt/4",*full* taxonomic name at that rank
31 27 
int_currplantscinamenoauth,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
32 28 
collectionnumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
33 29 
taxonobservation_id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
......
41 37 
int_currplantscifull,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/1,
42 38 
plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/2/_alt/1,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
43 39 
plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/2/_alt/2,
44 
Forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/3/_alt/1,*full* taxonomic name at that rank
45 
Variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/3/_alt/2,*full* taxonomic name at that rank
46 
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/3/_alt/3,*full* taxonomic name at that rank
47 
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/3/_alt/4,*full* taxonomic name at that rank
48 40 
int_currplantscinamenoauth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,
49 41 
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,includes genus author
50 42 
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
......
53 45 
int_currplantscifull,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/1,
54 46 
plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/2/_alt/1,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
55 47 
plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/2/_alt/2,
56 
Forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/3/_alt/1,*full* taxonomic name at that rank
57 
Variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/3/_alt/2,*full* taxonomic name at that rank
58 
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/3/_alt/3,*full* taxonomic name at that rank
59 
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/3/_alt/4,*full* taxonomic name at that rank
60 48 
taxonobservation_id,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/cond/_exists",
61 49 
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
62 50 
interpretationtype,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationtype,
......
66 54 
museumaccessionnumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
67 55 
collectionnumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
68 56 
Division,,** No join mapping for *Division **
57 
Forma,,** No non-empty join mapping for EQUIV#to:plantname#Forma ** *full* taxonomic name at that rank
58 
Species,,** No non-empty join mapping for EQUIV#to:plantname#Species ** *full* taxonomic name at that rank
69 59 
Subclass,,** No join mapping for *Subclass **
70 60 
Subdivision,,** No join mapping for *Subdivision **
71 61 
Subkingdom,,** No join mapping for *Subkingdom **
62 
Subspecies,,** No non-empty join mapping for EQUIV#to:plantname#Subspecies ** *full* taxonomic name at that rank
72 63 
Superdivision,,** No join mapping for *Superdivision **
64 
Variety,,** No non-empty join mapping for EQUIV#to:plantname#Variety ** *full* taxonomic name at that rank
73 65 
collector_id,,** No non-empty join mapping for UNUSED#collector_id **
74 66 
currentinterpretation,,** No join mapping for *currentinterpretation **
75 67 
d_currentaccepted,,** No join mapping for *d_currentaccepted **
inputs/VegBank/taxonobservation_/test.xml.ref
106 106 
                                                                                    <2>$plantname</2>
107 107 
                                                                                </_alt>
108 108 
                                                                            </2>
109 
                                                                            <3>
110 
                                                                                <_alt>
111 
                                                                                    <1>$Forma</1>
112 
                                                                                    <2>$Variety</2>
113 
                                                                                    <3>$Subspecies</3>
114 
                                                                                    <4>$Species</4>
115 
                                                                                </_alt>
116 
                                                                            </3>
117 109 
                                                                        </_alt>
118 110 
                                                                    </1>
119 111 
                                                                    <2>
......
140 132 
                                                            <2>$plantname</2>
141 133 
                                                        </_alt>
142 134 
                                                    </2>
143 
                                                    <3>
144 
                                                        <_alt>
145 
                                                            <1>$Forma</1>
146 
                                                            <2>$Variety</2>
147 
                                                            <3>$Subspecies</3>
148 
                                                            <4>$Species</4>
149 
                                                        </_alt>
150 
                                                    </3>
151 135 
                                                </_alt>
152 136 
                                            </taxonomicname>
153 137 
                                        </taxonverbatim>

Also available in: Unified diff