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Revision 10691

Added by Aaron Marcuse-Kubitza over 11 years ago

inputs/VegBank/taxonobservation_/map.csv: plantname: remapped to DUPLICATE#of:plantconcept_plantname because this is an exact duplicate

View differences:

inputs/VegBank/taxonobservation_/map.csv
43 43 
taxoninterpretation_accessioncode,*taxoninterpretation_accessioncode,,
44 44 
plantname_id,*plantname_id,,
45 45 
plantconcept_reference_id,*plantconcept_reference_id,,
46 
plantconcept_plantname,scientificName,/_alt/2/_alt/1,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
46 
plantconcept_plantname,scientificName,/_alt/2,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
47 47 
plantcode,*plantcode,,
48 48 
plantdescription,*plantdescription,,
49 49 
d_obscount,*d_obscount,,
......
63 63 
Subspecies,EQUIV#to:plantname#Subspecies,,*full* taxonomic name at that rank
64 64 
Variety,EQUIV#to:plantname#Variety,,*full* taxonomic name at that rank
65 65 
Forma,EQUIV#to:plantname#Forma,,*full* taxonomic name at that rank
66 
plantname,scientificName,/_alt/2/_alt/2,
66 
plantname,DUPLICATE#of:plantconcept_plantname#plantname,,exact duplicate
67 67 
plantname_reference_id,*plantname_reference_id,,
68 68 
dateentered,*dateentered,,
69 69 
:plot,observationGranularity,,
inputs/VegBank/taxonobservation_/VegBIEN.csv
22 22 
collectionnumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
23 23 
int_origplantscinamenoauth,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/1",
24 24 
int_currplantscifull,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/1",
25 
plantconcept_plantname,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/2/_alt/1","when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
26 
plantname,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/2/_alt/2",
25 
plantconcept_plantname,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2/_alt/2","when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
27 26 
int_currplantscinamenoauth,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
28 27 
collectionnumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
29 28 
taxonobservation_id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
......
35 34 
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
36 35 
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
37 36 
int_currplantscifull,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/1,
38 
plantconcept_plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/2/_alt/1,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
39 
plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/2/_alt/2,
37 
plantconcept_plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1/_alt/2,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
40 38 
int_currplantscinamenoauth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,
41 39 
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value,includes genus author
42 40 
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
43 41 
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,includes genus author
44 42 
int_currplantscinamenoauth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
45 43 
int_currplantscifull,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/1,
46 
plantconcept_plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/2/_alt/1,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
47 
plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/2/_alt/2,
44 
plantconcept_plantname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname/_alt/2,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
48 45 
taxonobservation_id,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/cond/_exists",
49 46 
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
50 47 
interpretationtype,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationtype,
......
86 83 
plantconcept_id,,** No join mapping for *plantconcept_id **
87 84 
plantconcept_reference_id,,** No join mapping for *plantconcept_reference_id **
88 85 
plantdescription,,** No join mapping for *plantdescription **
86 
plantname,,** No non-empty join mapping for DUPLICATE#of:plantconcept_plantname#plantname ** exact duplicate
89 87 
plantname_id,,** No join mapping for *plantname_id **
90 88 
plantname_reference_id,,** No join mapping for *plantname_reference_id **
91 89 
reference_id,,** No join mapping for *reference_id **
inputs/VegBank/taxonobservation_/test.xml.ref
100 100 
                                                                    <1>
101 101 
                                                                        <_alt>
102 102 
                                                                            <1>$int_currplantscifull</1>
103 
                                                                            <2>
104 
                                                                                <_alt>
105 
                                                                                    <1>$plantconcept_plantname</1>
106 
                                                                                    <2>$plantname</2>
107 
                                                                                </_alt>
108 
                                                                            </2>
103 
                                                                            <2>$plantconcept_plantname</2>
109 104 
                                                                        </_alt>
110 105 
                                                                    </1>
111 106 
                                                                    <2>
......
126 121 
                                            <taxonomicname>
127 122 
                                                <_alt>
128 123 
                                                    <1>$int_currplantscifull</1>
129 
                                                    <2>
130 
                                                        <_alt>
131 
                                                            <1>$plantconcept_plantname</1>
132 
                                                            <2>$plantname</2>
133 
                                                        </_alt>
134 
                                                    </2>
124 
                                                    <2>$plantconcept_plantname</2>
135 125 
                                                </_alt>
136 126 
                                            </taxonomicname>
137 127 
                                        </taxonverbatim>
inputs/VegBank/taxonobservation_/new_terms.csv
7 7 
int_currplantcommon,vernacularName,,
8 8 
interpretationdate,dateIdentified,,
9 9 
collectiondate,dateCollected,,
10 
plantconcept_plantname,scientificName,/_alt/2/_alt/1,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
11 
plantname,scientificName,/_alt/2/_alt/2,
10 
plantconcept_plantname,scientificName,/_alt/2,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is."
11 
plantname,DUPLICATE#of:plantconcept_plantname#plantname,,exact duplicate

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