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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 10609 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated for last backup
  bin 10599 about 11 years Aaron Marcuse-Kubitza bugfix: bin/import_times: filtering out the Sou...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10697 about 11 years Aaron Marcuse-Kubitza inputs/VegBank/observation_/test.xml.ref: updat...
  lib 10649 about 11 years Aaron Marcuse-Kubitza lib/sh/db.sh: mysqldump(): added create_db=1 fl...
  mappings 10616 about 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki. ad...
  planning 10704 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: flagged ti...
  schemas 10699 about 11 years Aaron Marcuse-Kubitza schemas/util.sql: combining functions taking an...
  web 10703 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10539 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phppgadmin.c...
README.TXT 23.7 KB 10603 about 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: min disk spa...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 433 Bytes 9916 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): documented runtime...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10704 08/22/2013 12:48 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: flagged timeline issues that can be done by iPlant personnel: Attribution and conditions of use, Geoscrubbing re-run, Geoscrubbing automated pipeline, Improve and complete data provider metadata, Obtain any additional new data
10703 08/22/2013 11:12 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. Gmvault: added run instructions for Mac.
10702 08/22/2013 10:50 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added link to Gmvault (Gmail backup), which wouldn't install for me on Mac (but that may be because I'm using 10.8, and Gmvault is for 10.7/10.6)
10701 08/22/2013 10:26 AM Aaron Marcuse-Kubitza

added planning/meetings/BIEN conference call availability.xlsx (backup of Google spreadsheet)
10700 08/22/2013 10:10 AM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: updated for changes made in the conference call: moved Data provider validations (spot-checking) to beginning since that seems to have been decided to be a higher priority than architectural changes
10699 08/21/2013 06:50 PM Aaron Marcuse-Kubitza

schemas/util.sql: combining functions taking anyelement params which could be text: take text param instead, so that other argument types (e.g. integer) will first be implicitly cast to text instead of trying to concatenate integers directly. this fixes a bug in the VegBank.stemcount_,stemlocation_ _join() of two integer pkeys, which first needed to be cast to text. anyelement was previously used so that other text-like types such as varchar could also be used, but varchar is implicitly castable to text so keeping anyelement should not be necessary.
10698 08/21/2013 06:07 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: added tasks to Avoid DB restructuring when ingesting a new datasource and Streamline process of mapping and adding a new datasource (not yet put in priority order)
10697 08/20/2013 08:49 PM Aaron Marcuse-Kubitza

inputs/VegBank/observation_/test.xml.ref: updated inserted row count
10696 08/20/2013 02:40 PM Aaron Marcuse-Kubitza

bugfix: inputs/VegBank/stemlocation_/map.csv: also join together taxonimportance_id, stemcount_id for aggregateOrganismObservationID so that the aggregateoccurrence pkeys match up with those imported from stemcount
10695 08/20/2013 01:40 PM Aaron Marcuse-Kubitza

bugfix: inputs/VegBank/stemcount_/map.csv: aggregateOrganismObservationID: prepend taxonimportance_id so that rows with only a taxonimportance entry (no stemcounts) will also have the required sourceaccessioncode

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