Revision 10823
Added by Aaron Marcuse-Kubitza over 11 years ago
inputs/NVS/TaxonOccurrence.Understory/map.csv | ||
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9 | 9 |
Verbatim Code,authorTaxonCode,/_alt/1, |
10 | 10 |
Taxon Bio Status,*Taxon Bio Status,, |
11 | 11 |
Taxon Palatibility,*Taxon Palatibility,, |
12 |
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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12 |
Taxon Growth Form,growthForm,"/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Fern, Forb, Graminoid, NonVascular, Shrub, SubShrub, Tree, Treefern, Unknown, Vine, WoodyMixed. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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13 | 13 |
Tier,*Tier,, |
14 | 14 |
Tier Description,*Tier Description,, |
15 | 15 |
Tier ID,*Tier ID,, |
inputs/NVS/TaxonOccurrence.Understory/VegBIEN.csv | ||
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12 | 12 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
13 | 13 |
Verbatim Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/1", |
14 | 14 |
Species Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/2", |
15 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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15 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Fern, Forb, Graminoid, NonVascular, Shrub, SubShrub, Tree, Treefern, Unknown, Vine, WoodyMixed. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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16 | 16 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
inputs/NVS/TaxonOccurrence.Understory/test.xml.ref | ||
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20 | 20 |
</authortaxoncode> |
21 | 21 |
<growthform> |
22 | 22 |
<_map> |
23 |
<fern>forb</fern> |
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23 | 24 |
<graminoid>grass</graminoid> |
25 |
<subshrub>shrub</subshrub> |
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24 | 26 |
<treefern>forb</treefern> |
27 |
<woodymixed>woody</woodymixed> |
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28 |
<unknown></unknown> |
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25 | 29 |
<*>*</*> |
26 | 30 |
<value><_lowercase><value>$Taxon Growth Form</value></_lowercase></value> |
27 | 31 |
</_map> |
inputs/NVS/TaxonOccurrence.Understory/new_terms.csv | ||
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2 | 2 |
Plot,locationName,, |
3 | 3 |
Species Code,authorTaxonCode,/_alt/2, |
4 | 4 |
Verbatim Code,authorTaxonCode,/_alt/1, |
5 |
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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5 |
Taxon Growth Form,growthForm,"/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Fern, Forb, Graminoid, NonVascular, Shrub, SubShrub, Tree, Treefern, Unknown, Vine, WoodyMixed. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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6 | 6 |
Taxon Obs Note,taxonRemarks,, |
inputs/NVS/StemObservation/map.csv | ||
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10 | 10 |
Verbatim Code,authorTaxonCode,/_alt/1, |
11 | 11 |
Taxon Bio Status,*Taxon Bio Status,, |
12 | 12 |
Taxon Palatibility,*Taxon Palatibility,, |
13 |
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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13 |
Taxon Growth Form,growthForm,"/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Shrub, SubShrub, Tree, Treefern, Unknown. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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14 | 14 |
Association No,*Association No,, |
15 | 15 |
Association,*Association,, |
16 | 16 |
Alive State,*Alive State,, |
inputs/NVS/StemObservation/VegBIEN.csv | ||
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21 | 21 |
Verbatim Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/1", |
22 | 22 |
Species Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/2", |
23 | 23 |
Identifier,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2", |
24 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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24 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Shrub, SubShrub, Tree, Treefern, Unknown. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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25 | 25 |
Item ID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
26 | 26 |
Item Obs ID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
27 | 27 |
Item Obs ID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else/_first/1", |
inputs/NVS/StemObservation/test.xml.ref | ||
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25 | 25 |
<authortaxoncode>$Identifier</authortaxoncode> |
26 | 26 |
<growthform> |
27 | 27 |
<_map> |
28 |
<fern>forb</fern> |
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28 | 29 |
<graminoid>grass</graminoid> |
30 |
<subshrub>shrub</subshrub> |
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29 | 31 |
<treefern>forb</treefern> |
32 |
<woodymixed>woody</woodymixed> |
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33 |
<unknown></unknown> |
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30 | 34 |
<*>*</*> |
31 | 35 |
<value><_lowercase><value>$Taxon Growth Form</value></_lowercase></value> |
32 | 36 |
</_map> |
inputs/NVS/StemObservation/new_terms.csv | ||
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3 | 3 |
Identifier,tag,, |
4 | 4 |
Species Code,authorTaxonCode,/_alt/2, |
5 | 5 |
Verbatim Code,authorTaxonCode,/_alt/1, |
6 |
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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6 |
Taxon Growth Form,growthForm,"/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Shrub, SubShrub, Tree, Treefern, Unknown. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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7 | 7 |
Diameter,diameterBreastHeight_cm,,Units is always cm |
8 | 8 |
Item Obs ID,individualObservationID,, |
9 | 9 |
Item ID,individualID,, |
inputs/NVS/AggregateOccurrence/map.csv | ||
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9 | 9 |
Verbatim Code,authorTaxonCode,/_alt/1, |
10 | 10 |
Taxon Bio Status,*Taxon Bio Status,, |
11 | 11 |
Taxon Palatibility,*Taxon Palatibility,, |
12 |
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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12 |
Taxon Growth Form,growthForm,"/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Fern, Forb, Graminoid, NonVascular, Shrub, SubShrub, Tree, Treefern, Vine. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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13 | 13 |
Tier,*Tier,, |
14 | 14 |
Tier Description,*Tier Description,, |
15 | 15 |
Tier ID,*Tier ID,, |
inputs/NVS/AggregateOccurrence/VegBIEN.csv | ||
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12 | 12 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
13 | 13 |
Verbatim Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/1", |
14 | 14 |
Species Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/2", |
15 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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15 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Fern, Forb, Graminoid, NonVascular, Shrub, SubShrub, Tree, Treefern, Vine. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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16 | 16 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
inputs/NVS/AggregateOccurrence/test.xml.ref | ||
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20 | 20 |
</authortaxoncode> |
21 | 21 |
<growthform> |
22 | 22 |
<_map> |
23 |
<fern>forb</fern> |
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23 | 24 |
<graminoid>grass</graminoid> |
25 |
<subshrub>shrub</subshrub> |
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24 | 26 |
<treefern>forb</treefern> |
27 |
<woodymixed>woody</woodymixed> |
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28 |
<unknown></unknown> |
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25 | 29 |
<*>*</*> |
26 | 30 |
<value><_lowercase><value>$Taxon Growth Form</value></_lowercase></value> |
27 | 31 |
</_map> |
inputs/NVS/AggregateOccurrence/new_terms.csv | ||
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2 | 2 |
Plot,locationName,, |
3 | 3 |
Species Code,authorTaxonCode,/_alt/2, |
4 | 4 |
Verbatim Code,authorTaxonCode,/_alt/1, |
5 |
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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5 |
Taxon Growth Form,growthForm,"/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Fern, Forb, Graminoid, NonVascular, Shrub, SubShrub, Tree, Treefern, Vine. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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6 | 6 |
Taxon Obs Note,taxonRemarks,, |
inputs/NVS/TaxonOccurrence/map.csv | ||
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9 | 9 |
Verbatim Code,authorTaxonCode,/_alt/1, |
10 | 10 |
Taxon Bio Status,*Taxon Bio Status,, |
11 | 11 |
Taxon Palatibility,*Taxon Palatibility,, |
12 |
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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12 |
Taxon Growth Form,growthForm,"/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Graminoid, Shrub, Tree. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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13 | 13 |
Herbivore,*Herbivore,, |
14 | 14 |
Severity,*Severity,, |
15 | 15 |
Taxon Obs Note,taxonRemarks,, |
inputs/NVS/TaxonOccurrence/VegBIEN.csv | ||
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12 | 12 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
13 | 13 |
Verbatim Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/1", |
14 | 14 |
Species Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/2", |
15 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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15 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Graminoid, Shrub, Tree. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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16 | 16 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
inputs/NVS/TaxonOccurrence/test.xml.ref | ||
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20 | 20 |
</authortaxoncode> |
21 | 21 |
<growthform> |
22 | 22 |
<_map> |
23 |
<fern>forb</fern> |
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23 | 24 |
<graminoid>grass</graminoid> |
25 |
<subshrub>shrub</subshrub> |
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24 | 26 |
<treefern>forb</treefern> |
27 |
<woodymixed>woody</woodymixed> |
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28 |
<unknown></unknown> |
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25 | 29 |
<*>*</*> |
26 | 30 |
<value><_lowercase><value>$Taxon Growth Form</value></_lowercase></value> |
27 | 31 |
</_map> |
inputs/NVS/TaxonOccurrence/new_terms.csv | ||
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2 | 2 |
Plot,locationName,, |
3 | 3 |
Species Code,authorTaxonCode,/_alt/2, |
4 | 4 |
Verbatim Code,authorTaxonCode,/_alt/1, |
5 |
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
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5 |
Taxon Growth Form,growthForm,"/_map:[fern=forb,graminoid=grass,subshrub=shrub,treefern=forb,woodymixed=woody,unknown=,*=*]/value/_lowercase/value","values: Graminoid, Shrub, Tree. mapped using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 ."
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6 | 6 |
Taxon Obs Note,taxonRemarks,, |
Also available in: Unified diff
inputs/NVS/*/map.csv: Taxon Growth Form: mapped to VegBIEN.growthform enum, using http://www.fgdc.gov/standards/projects/FGDC-standards-projects/vegetation/NVCS_V2_FINAL_2008-02.pdf#page=83§ion.page=76 . documented values used by each table.