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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 10752 over 11 years Aaron Marcuse-Kubitza updated backups/TNRS.backup.md5
  bin 10849 about 11 years Aaron Marcuse-Kubitza bugfix: bin/import_all: `rm inputs/.TNRS/tnrs/t...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 10707 over 11 years Aaron Marcuse-Kubitza added derived/biengeo/ from https://projects.nc...
  exports 9928 over 11 years Aaron Marcuse-Kubitza added exports/_archive/
  inputs 10848 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: don't map...
  lib 10845 about 11 years Aaron Marcuse-Kubitza bugfix: lib/sql_io.py: put_table(): Getting out...
  mappings 10848 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: don't map...
  planning 10846 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 10844 about 11 years Aaron Marcuse-Kubitza bugfix: schemas/vegbien.sql: locationevent: loc...
  web 10837 over 11 years Aaron Marcuse-Kubitza fix: web/links/index.htm: PostgreSQL: vacuuming...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10539 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phppgadmin.c...
README.TXT 23.6 KB 10847 about 11 years Aaron Marcuse-Kubitza bin/import_all: added step to remove any leftov...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 660 Bytes 10828 over 11 years Aaron Marcuse-Kubitza /run: taxon_trait/make(): order by scientificNa...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10849 08/31/2013 07:44 PM Aaron Marcuse-Kubitza

bugfix: bin/import_all: `rm inputs/.TNRS/tnrs/tnrs.make.lock`: need to use `"rm"` instead of `rm` so that we don't use any rm alias the user might have in their shell (import_all is run in the calling shell so that the jobs are owned by the calling shell)

10848 08/31/2013 07:36 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: don't map datasetURL to source.url for taxa-only data (this mapping should only occur for Source tables)

10847 08/31/2013 07:27 PM Aaron Marcuse-Kubitza

bin/import_all: added step to remove any leftover TNRS lockfile (previously done manually)

10846 08/31/2013 06:46 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: updated for progress

10845 08/31/2013 06:32 PM Aaron Marcuse-Kubitza

bugfix: lib/sql_io.py: put_table(): Getting output table pkeys of existing/inserted rows: need to include the index cond in the join condition here, too (using var join_custom_cond), so that an index scan can be used instead of a much slower full-table sort

10844 08/31/2013 06:01 PM Aaron Marcuse-Kubitza

bugfix: schemas/vegbien.sql: locationevent: locationevent_unique_within_location unique index: added COALESCE expression around location_id since it is nullable, and this is needed for the left and right sides of the join to exactly match up to use an index scan

10843 08/31/2013 05:52 PM Aaron Marcuse-Kubitza

bugfix: lib/sql_io.py: put_table(): DuplicateKeyException: need to include any index cond in the join condition, so that an index scan can be used instead of a much slower full-table sort (otherwise the query planner will not know that it can restrict results to rows satisfying the index cond)

10842 08/31/2013 05:48 PM Aaron Marcuse-Kubitza

lib/sql_gen.py: Join: added custom_cond param that can be used to add to the JOIN condition

10841 08/31/2013 01:02 AM Aaron Marcuse-Kubitza

lib/sql.py: distinct_table(): support custom filters on the distincting query

10840 08/31/2013 01:01 AM Aaron Marcuse-Kubitza

lib/sql_gen.py: ColValueCond: support conds that are just plain SQL (without separate left and right sides) using special custom_cond flag value

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