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Revision 10941

Added by Aaron Marcuse-Kubitza about 11 years ago

inputs/VegBank/stemlocation_/: translated one-to-many mappings to postprocessing derived columns, using the steps at http://wiki.vegpath.org/Adding_new-style_import_to_a_datasource#Translating-filters-to-postprocessing-derived-columns

View differences:

inputs/VegBank/stemlocation_/postprocess.sql
3 3 
SELECT create_if_not_exists($$ALTER TABLE $$||:table_str||$$ ADD PRIMARY KEY ("stemlocation_id")$$); -- runtime: 0.1 s ("Time: 74.164 ms") @starscream
4 4 

  		




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SELECT mk_derived_col((:table_str, 'individualID'), $$stemlocation_id$$) ; -- runtime: ~0 ("Time: 1.562 ms") @starscream


  		




  
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SELECT mk_derived_col((:table_str, 'aggregateOrganismObservationID'),


  		




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$$_join("taxonimportance_id"::text, "stemcount_id"::text)$$)


  		




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; -- runtime: 0.5 s ("Time: 441.059 ms") @starscream


  		












  

    
      inputs/VegBank/stemlocation_/map.csv
    
  





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stemtaxonarea,*stemtaxonarea,,


  		




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emb_stemcount,*emb_stemcount,,


  		




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stemlocation_id,stemID,,


  		




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stemlocation_id,individualID,,


  		




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stemcode,UNUSED#stemcode,,


  		




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stemxposition,UNUSED#stemxposition,,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)"


  		




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stemyposition,UNUSED#stemyposition,,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)"


  		




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stemhealth,*stemhealth,,this *is* populated


  		




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emb_stemlocation,*emb_stemlocation,,


  		




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aggregateOrganismObservationID,aggregateOrganismObservationID,,


  		




  
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individualID,individualID,,


  		












  

    
      inputs/VegBank/stemlocation_/VegBIEN.csv
    
  





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VegBank,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments


  		




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stemlocation_id,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",


  		




  
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individualID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",


  		




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stemcount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,


  		




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stemlocation_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode/_first/2,


  		




  
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individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode/_first/2,


  		




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stemdiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)"


  		




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stemheight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)"


  		




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stemlocation_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,


  		




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aggregateOrganismObservationID,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode,


  		




  
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individualID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/cond/_exists",


  		




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stemlocation_id,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/cond/_exists",


  		




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stemlocation_id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",


  		




  
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individualID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",


  		




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aggregateOrganismObservationID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists",


  		




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stemlocation_id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else/_first/2",


  		




  
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individualID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else/_first/2",


  		




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emb_stemcount,,** No join mapping for *emb_stemcount ** 


  		




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emb_stemlocation,,** No join mapping for *emb_stemlocation ** 


  		




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stemcode,,** No non-empty join mapping for UNUSED#stemcode ** 


  		












  

    
      inputs/VegBank/stemlocation_/test.xml.ref
    
  





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                                <aggregateoccurrence>


  		




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                                    <count>$stemcount</count>


  		




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                                    <plantobservation>


  		




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                                        <sourceaccessioncode>$stemlocation_id</sourceaccessioncode>


  		




  
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                                        <sourceaccessioncode>$individualID</sourceaccessioncode>


  		




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                                        <stemobservation>


  		




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                                            <diameterbreastheight_m><_cm_to_m><value>$stemdiameter</value></_cm_to_m></diameterbreastheight_m>


  		




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                                            <height_m>$stemheight</height_m>


  		












  

    
      inputs/VegBank/stemlocation_/new_terms.csv
    
  





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taxonimportance_id,aggregateOrganismObservationID__taxon_presence,,


  		




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stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)"


  		




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stemlocation_id,stemID,,


  		




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stemlocation_id,individualID,,


  		












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