Revision 10944
Added by Aaron Marcuse-Kubitza about 11 years ago
inputs/VegBank/stemcount_/map.csv | ||
---|---|---|
9 | 9 |
GROUP BY taxonobservation_id |
10 | 10 |
HAVING count(distinct taxonimportance_id) > 1 |
11 | 11 |
-----" |
12 |
stratum_id,*stratum_id,, |
|
12 |
stratum_id,*stemcount_--stratum_id,,
|
|
13 | 13 |
cover,coverPercent,, |
14 |
basalarea,*basalarea,, |
|
15 |
biomass,*biomass,, |
|
16 |
inferencearea,*inferencearea,, |
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17 |
stratumbase,*stratumbase,, |
|
18 |
stratumheight,*stratumheight,, |
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19 |
emb_taxonimportance,*emb_taxonimportance,, |
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20 |
covercode,*covercode,, |
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14 |
basalarea,*stemcount_--basalarea,,
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|
15 |
biomass,*stemcount_--biomass,,
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|
16 |
inferencearea,*stemcount_--inferencearea,,
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|
17 |
stratumbase,*stemcount_--stratumbase,,
|
|
18 |
stratumheight,*stemcount_--stratumheight,,
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|
19 |
emb_taxonimportance,*stemcount_--emb_taxonimportance,,
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|
20 |
covercode,*stemcount_--covercode,,
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|
21 | 21 |
stemcount_id,aggregateOrganismObservationID__individual_count,, |
22 | 22 |
stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
23 |
stemdiameteraccuracy,*stemdiameteraccuracy,, |
|
23 |
stemdiameteraccuracy,*stemcount_--stemdiameteraccuracy,,
|
|
24 | 24 |
stemheight,height_m,,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
25 |
stemheightaccuracy,*stemheightaccuracy,, |
|
25 |
stemheightaccuracy,*stemcount_--stemheightaccuracy,,
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|
26 | 26 |
stemcount,individualCount,, |
27 |
stemtaxonarea,*stemtaxonarea,, |
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28 |
emb_stemcount,*emb_stemcount,, |
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27 |
stemtaxonarea,*stemcount_--stemtaxonarea,, |
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28 |
emb_stemcount,*stemcount_--emb_stemcount,, |
inputs/VegBank/stemcount_/new_terms.csv | ||
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1 | 1 |
taxonimportance_id,aggregateOrganismObservationID__taxon_presence,, |
2 |
stratum_id,*stemcount_--stratum_id,, |
|
2 | 3 |
cover,coverPercent,, |
4 |
basalarea,*stemcount_--basalarea,, |
|
5 |
biomass,*stemcount_--biomass,, |
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6 |
inferencearea,*stemcount_--inferencearea,, |
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7 |
stratumbase,*stemcount_--stratumbase,, |
|
8 |
stratumheight,*stemcount_--stratumheight,, |
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9 |
emb_taxonimportance,*stemcount_--emb_taxonimportance,, |
|
10 |
covercode,*stemcount_--covercode,, |
|
3 | 11 |
stemcount_id,aggregateOrganismObservationID__individual_count,, |
4 | 12 |
stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
13 |
stemdiameteraccuracy,*stemcount_--stemdiameteraccuracy,, |
|
14 |
stemheightaccuracy,*stemcount_--stemheightaccuracy,, |
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15 |
stemtaxonarea,*stemcount_--stemtaxonarea,, |
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16 |
emb_stemcount,*stemcount_--emb_stemcount,, |
inputs/VegBank/stemcount_/unmapped_terms.csv | ||
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1 | 1 |
aggregateOrganismObservationID__taxon_presence |
2 |
*stratum_id |
|
3 |
*basalarea |
|
4 |
*biomass |
|
5 |
*inferencearea |
|
6 |
*stratumbase |
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7 |
*stratumheight |
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8 |
*emb_taxonimportance |
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9 |
*covercode |
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2 |
*stemcount_--stratum_id
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|
3 |
*stemcount_--basalarea
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|
4 |
*stemcount_--biomass
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|
5 |
*stemcount_--inferencearea
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6 |
*stemcount_--stratumbase
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7 |
*stemcount_--stratumheight
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8 |
*stemcount_--emb_taxonimportance
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9 |
*stemcount_--covercode
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|
10 | 10 |
aggregateOrganismObservationID__individual_count |
11 |
*stemdiameteraccuracy |
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12 |
*stemheightaccuracy |
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13 |
*stemtaxonarea |
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14 |
*emb_stemcount |
|
11 |
*stemcount_--stemdiameteraccuracy |
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12 |
*stemcount_--stemheightaccuracy |
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13 |
*stemcount_--stemtaxonarea |
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14 |
*stemcount_--emb_stemcount |
inputs/VegBank/observation_/map.csv | ||
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1 | 1 |
VegBank,VegCore,Filter,Comments |
2 | 2 |
observation_id,eventID,, |
3 |
previousobs_id,*previousobs_id,, |
|
3 |
previousobs_id,*observation_--previousobs_id,,
|
|
4 | 4 |
plot_id,locationID,, |
5 | 5 |
project_id,projectID,, |
6 | 6 |
authorobscode,authorEventCode,, |
7 |
dateaccuracy,*dateaccuracy,, |
|
8 |
covermethod_id,*covermethod_id,, |
|
9 |
coverdispersion,*coverdispersion,, |
|
10 |
autotaxoncover,*autotaxoncover,, |
|
11 |
stratummethod_id,*stratummethod_id,, |
|
7 |
dateaccuracy,*observation_--dateaccuracy,,
|
|
8 |
covermethod_id,*observation_--covermethod_id,,
|
|
9 |
coverdispersion,*observation_--coverdispersion,,
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|
10 |
autotaxoncover,*observation_--autotaxoncover,,
|
|
11 |
stratummethod_id,*observation_--stratummethod_id,,
|
|
12 | 12 |
methodnarrative,samplingProtocol,, |
13 |
taxonobservationarea,*taxonobservationarea,, |
|
14 |
stemsizelimit,*stemsizelimit,, |
|
15 |
stemobservationarea,*stemobservationarea,, |
|
16 |
stemsamplemethod,*stemsamplemethod,, |
|
17 |
originaldata,*originaldata,, |
|
18 |
effortlevel,*effortlevel,, |
|
19 |
plotvalidationlevel,*plotvalidationlevel,, |
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20 |
floristicquality,*floristicquality,, |
|
21 |
bryophytequality,*bryophytequality,, |
|
22 |
lichenquality,*lichenquality,, |
|
23 |
observationnarrative,*observationnarrative,, |
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24 |
landscapenarrative,*landscapenarrative,, |
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25 |
homogeneity,*homogeneity,, |
|
26 |
phenologicaspect,*phenologicaspect,, |
|
27 |
representativeness,*representativeness,, |
|
28 |
standmaturity,*standmaturity,, |
|
29 |
successionalstatus,*successionalstatus,, |
|
30 |
basalarea,*basalarea,, |
|
31 |
hydrologicregime,*hydrologicregime,, |
|
32 |
soilmoistureregime,*soilmoistureregime,, |
|
33 |
soildrainage,*soildrainage,, |
|
34 |
watersalinity,*watersalinity,, |
|
35 |
waterdepth,*waterdepth,, |
|
36 |
shoredistance,*shoredistance,, |
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37 |
soildepth,*soildepth,, |
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38 |
organicdepth,*organicdepth,, |
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39 |
soiltaxon_id,*soiltaxon_id,, |
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40 |
soiltaxonsrc,*soiltaxonsrc,, |
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41 |
percentbedrock,*percentbedrock,, |
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42 |
percentrockgravel,*percentrockgravel,, |
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43 |
percentwood,*percentwood,, |
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44 |
percentlitter,*percentlitter,, |
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45 |
percentbaresoil,*percentbaresoil,, |
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46 |
percentwater,*percentwater,, |
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47 |
percentother,*percentother,, |
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48 |
nameother,*nameother,, |
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49 |
treeht,*treeht,, |
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50 |
shrubht,*shrubht,, |
|
51 |
fieldht,*fieldht,, |
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52 |
nonvascularht,*nonvascularht,, |
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53 |
submergedht,*submergedht,, |
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54 |
treecover,*treecover,, |
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55 |
shrubcover,*shrubcover,, |
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56 |
fieldcover,*fieldcover,, |
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57 |
nonvascularcover,*nonvascularcover,, |
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58 |
floatingcover,*floatingcover,, |
|
59 |
submergedcover,*submergedcover,, |
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60 |
dominantstratum,*dominantstratum,, |
|
61 |
growthform1type,*growthform1type,, |
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62 |
growthform2type,*growthform2type,, |
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63 |
growthform3type,*growthform3type,, |
|
64 |
growthform1cover,*growthform1cover,, |
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65 |
growthform2cover,*growthform2cover,, |
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66 |
growthform3cover,*growthform3cover,, |
|
67 |
totalcover,*totalcover,, |
|
68 |
notespublic,*notespublic,, |
|
69 |
notesmgt,*notesmgt,, |
|
70 |
revisions,*revisions,, |
|
13 |
taxonobservationarea,*observation_--taxonobservationarea,,
|
|
14 |
stemsizelimit,*observation_--stemsizelimit,,
|
|
15 |
stemobservationarea,*observation_--stemobservationarea,,
|
|
16 |
stemsamplemethod,*observation_--stemsamplemethod,,
|
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17 |
originaldata,*observation_--originaldata,,
|
|
18 |
effortlevel,*observation_--effortlevel,,
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|
19 |
plotvalidationlevel,*observation_--plotvalidationlevel,,
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|
20 |
floristicquality,*observation_--floristicquality,,
|
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21 |
bryophytequality,*observation_--bryophytequality,,
|
|
22 |
lichenquality,*observation_--lichenquality,,
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23 |
observationnarrative,*observation_--observationnarrative,,
|
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24 |
landscapenarrative,*observation_--landscapenarrative,,
|
|
25 |
homogeneity,*observation_--homogeneity,,
|
|
26 |
phenologicaspect,*observation_--phenologicaspect,,
|
|
27 |
representativeness,*observation_--representativeness,,
|
|
28 |
standmaturity,*observation_--standmaturity,,
|
|
29 |
successionalstatus,*observation_--successionalstatus,,
|
|
30 |
basalarea,*observation_--basalarea,,
|
|
31 |
hydrologicregime,*observation_--hydrologicregime,,
|
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32 |
soilmoistureregime,*observation_--soilmoistureregime,,
|
|
33 |
soildrainage,*observation_--soildrainage,,
|
|
34 |
watersalinity,*observation_--watersalinity,,
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|
35 |
waterdepth,*observation_--waterdepth,,
|
|
36 |
shoredistance,*observation_--shoredistance,,
|
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37 |
soildepth,*observation_--soildepth,,
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38 |
organicdepth,*observation_--organicdepth,,
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39 |
soiltaxon_id,*observation_--soiltaxon_id,,
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40 |
soiltaxonsrc,*observation_--soiltaxonsrc,,
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41 |
percentbedrock,*observation_--percentbedrock,,
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42 |
percentrockgravel,*observation_--percentrockgravel,,
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43 |
percentwood,*observation_--percentwood,,
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44 |
percentlitter,*observation_--percentlitter,,
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45 |
percentbaresoil,*observation_--percentbaresoil,,
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|
46 |
percentwater,*observation_--percentwater,,
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47 |
percentother,*observation_--percentother,,
|
|
48 |
nameother,*observation_--nameother,,
|
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49 |
treeht,*observation_--treeht,,
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|
50 |
shrubht,*observation_--shrubht,,
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51 |
fieldht,*observation_--fieldht,,
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52 |
nonvascularht,*observation_--nonvascularht,,
|
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53 |
submergedht,*observation_--submergedht,,
|
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54 |
treecover,*observation_--treecover,,
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55 |
shrubcover,*observation_--shrubcover,,
|
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56 |
fieldcover,*observation_--fieldcover,,
|
|
57 |
nonvascularcover,*observation_--nonvascularcover,,
|
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58 |
floatingcover,*observation_--floatingcover,,
|
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59 |
submergedcover,*observation_--submergedcover,,
|
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60 |
dominantstratum,*observation_--dominantstratum,,
|
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61 |
growthform1type,*observation_--growthform1type,,
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62 |
growthform2type,*observation_--growthform2type,,
|
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63 |
growthform3type,*observation_--growthform3type,,
|
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64 |
growthform1cover,*observation_--growthform1cover,,
|
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65 |
growthform2cover,*observation_--growthform2cover,,
|
|
66 |
growthform3cover,*observation_--growthform3cover,,
|
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67 |
totalcover,*observation_--totalcover,,
|
|
68 |
notespublic,*observation_--notespublic,,
|
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69 |
notesmgt,*observation_--notesmgt,,
|
|
70 |
revisions,*observation_--revisions,,
|
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71 | 71 |
obsstartdate,startDate,, |
72 | 72 |
obsenddate,endDate,, |
73 |
dateentered,*dateentered,, |
|
74 |
emb_observation,*emb_observation,, |
|
75 |
interp_orig_ci_id,*interp_orig_ci_id,, |
|
76 |
interp_orig_cc_id,*interp_orig_cc_id,, |
|
77 |
interp_orig_sciname,*interp_orig_sciname,, |
|
78 |
interp_orig_code,*interp_orig_code,, |
|
79 |
interp_orig_party_id,*interp_orig_party_id,, |
|
80 |
interp_orig_partyname,*interp_orig_partyname,, |
|
81 |
interp_current_ci_id,*interp_current_ci_id,, |
|
82 |
interp_current_cc_id,*interp_current_cc_id,, |
|
83 |
interp_current_sciname,*interp_current_sciname,, |
|
84 |
interp_current_code,*interp_current_code,, |
|
85 |
interp_current_party_id,*interp_current_party_id,, |
|
86 |
interp_current_partyname,*interp_current_partyname,, |
|
87 |
interp_bestfit_ci_id,*interp_bestfit_ci_id,, |
|
88 |
interp_bestfit_cc_id,*interp_bestfit_cc_id,, |
|
89 |
interp_bestfit_sciname,*interp_bestfit_sciname,, |
|
90 |
interp_bestfit_code,*interp_bestfit_code,, |
|
91 |
interp_bestfit_party_id,*interp_bestfit_party_id,, |
|
92 |
interp_bestfit_partyname,*interp_bestfit_partyname,, |
|
93 |
toptaxon1name,*toptaxon1name,, |
|
94 |
toptaxon2name,*toptaxon2name,, |
|
95 |
toptaxon3name,*toptaxon3name,, |
|
96 |
toptaxon4name,*toptaxon4name,, |
|
97 |
toptaxon5name,*toptaxon5name,, |
|
98 |
numberoftaxa,*numberoftaxa,, |
|
99 |
accessioncode,*accessioncode,, |
|
100 |
soilobs_id,*soilobs_id,, |
|
101 |
soilhorizon,*soilhorizon,, |
|
102 |
soildepthtop,*soildepthtop,, |
|
103 |
soildepthbottom,*soildepthbottom,, |
|
104 |
soilcolor,*soilcolor,, |
|
73 |
dateentered,*observation_--dateentered,,
|
|
74 |
emb_observation,*observation_--emb_observation,,
|
|
75 |
interp_orig_ci_id,*observation_--interp_orig_ci_id,,
|
|
76 |
interp_orig_cc_id,*observation_--interp_orig_cc_id,,
|
|
77 |
interp_orig_sciname,*observation_--interp_orig_sciname,,
|
|
78 |
interp_orig_code,*observation_--interp_orig_code,,
|
|
79 |
interp_orig_party_id,*observation_--interp_orig_party_id,,
|
|
80 |
interp_orig_partyname,*observation_--interp_orig_partyname,,
|
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81 |
interp_current_ci_id,*observation_--interp_current_ci_id,,
|
|
82 |
interp_current_cc_id,*observation_--interp_current_cc_id,,
|
|
83 |
interp_current_sciname,*observation_--interp_current_sciname,,
|
|
84 |
interp_current_code,*observation_--interp_current_code,,
|
|
85 |
interp_current_party_id,*observation_--interp_current_party_id,,
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|
86 |
interp_current_partyname,*observation_--interp_current_partyname,,
|
|
87 |
interp_bestfit_ci_id,*observation_--interp_bestfit_ci_id,,
|
|
88 |
interp_bestfit_cc_id,*observation_--interp_bestfit_cc_id,,
|
|
89 |
interp_bestfit_sciname,*observation_--interp_bestfit_sciname,,
|
|
90 |
interp_bestfit_code,*observation_--interp_bestfit_code,,
|
|
91 |
interp_bestfit_party_id,*observation_--interp_bestfit_party_id,,
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92 |
interp_bestfit_partyname,*observation_--interp_bestfit_partyname,,
|
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93 |
toptaxon1name,*observation_--toptaxon1name,,
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94 |
toptaxon2name,*observation_--toptaxon2name,,
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95 |
toptaxon3name,*observation_--toptaxon3name,,
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96 |
toptaxon4name,*observation_--toptaxon4name,,
|
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97 |
toptaxon5name,*observation_--toptaxon5name,,
|
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98 |
numberoftaxa,*observation_--numberoftaxa,,
|
|
99 |
accessioncode,*observation_--accessioncode,,
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100 |
soilobs_id,*observation_--soilobs_id,,
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|
101 |
soilhorizon,*observation_--soilhorizon,,
|
|
102 |
soildepthtop,*observation_--soildepthtop,,
|
|
103 |
soildepthbottom,*observation_--soildepthbottom,,
|
|
104 |
soilcolor,*observation_--soilcolor,,
|
|
105 | 105 |
soilorganic,organic_percent,,"""Percent organic content of the soil"" (soilOrganic definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
106 | 106 |
soiltexture,texture,, |
107 | 107 |
soilsand,sand_percent,,"""Percent sand in the soil horizon"" (soilSand definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
108 | 108 |
soilsilt,silt_percent,,"""Percent silt in the soil horizon"" (soilSilt definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
109 | 109 |
soilclay,clay_percent,,"""Percent clay in the soil horizon"" (soilClay definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
110 |
soilcoarse,*soilcoarse,,"""percent coarse fragments in the soil"" (soilCoarse definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
|
110 |
soilcoarse,*observation_--soilcoarse,,"""percent coarse fragments in the soil"" (soilCoarse definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)"
|
|
111 | 111 |
soilph,ph,, |
112 | 112 |
exchangecapacity,cationExchangeCapacity_cmol_kg,, |
113 | 113 |
basesaturation,baseSaturation_percent,,"""Percent base saturation"" (baseSaturation definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
114 |
soildescription,*soildescription,, |
|
115 |
emb_soilobs,*emb_soilobs,, |
|
114 |
soildescription,*observation_--soildescription,, |
|
115 |
emb_soilobs,*observation_--emb_soilobs,, |
inputs/VegBank/observation_/new_terms.csv | ||
---|---|---|
1 | 1 |
observation_id,eventID,, |
2 |
previousobs_id,*observation_--previousobs_id,, |
|
3 |
dateaccuracy,*observation_--dateaccuracy,, |
|
4 |
covermethod_id,*observation_--covermethod_id,, |
|
5 |
coverdispersion,*observation_--coverdispersion,, |
|
6 |
autotaxoncover,*observation_--autotaxoncover,, |
|
7 |
stratummethod_id,*observation_--stratummethod_id,, |
|
2 | 8 |
methodnarrative,samplingProtocol,, |
9 |
taxonobservationarea,*observation_--taxonobservationarea,, |
|
10 |
stemsizelimit,*observation_--stemsizelimit,, |
|
11 |
stemobservationarea,*observation_--stemobservationarea,, |
|
12 |
stemsamplemethod,*observation_--stemsamplemethod,, |
|
13 |
originaldata,*observation_--originaldata,, |
|
14 |
effortlevel,*observation_--effortlevel,, |
|
15 |
plotvalidationlevel,*observation_--plotvalidationlevel,, |
|
16 |
floristicquality,*observation_--floristicquality,, |
|
17 |
bryophytequality,*observation_--bryophytequality,, |
|
18 |
lichenquality,*observation_--lichenquality,, |
|
19 |
observationnarrative,*observation_--observationnarrative,, |
|
20 |
landscapenarrative,*observation_--landscapenarrative,, |
|
21 |
homogeneity,*observation_--homogeneity,, |
|
22 |
phenologicaspect,*observation_--phenologicaspect,, |
|
23 |
representativeness,*observation_--representativeness,, |
|
24 |
standmaturity,*observation_--standmaturity,, |
|
25 |
successionalstatus,*observation_--successionalstatus,, |
|
26 |
basalarea,*observation_--basalarea,, |
|
27 |
hydrologicregime,*observation_--hydrologicregime,, |
|
28 |
soilmoistureregime,*observation_--soilmoistureregime,, |
|
29 |
soildrainage,*observation_--soildrainage,, |
|
30 |
watersalinity,*observation_--watersalinity,, |
|
31 |
waterdepth,*observation_--waterdepth,, |
|
32 |
shoredistance,*observation_--shoredistance,, |
|
33 |
soildepth,*observation_--soildepth,, |
|
34 |
organicdepth,*observation_--organicdepth,, |
|
35 |
soiltaxon_id,*observation_--soiltaxon_id,, |
|
36 |
soiltaxonsrc,*observation_--soiltaxonsrc,, |
|
37 |
percentbedrock,*observation_--percentbedrock,, |
|
38 |
percentrockgravel,*observation_--percentrockgravel,, |
|
39 |
percentwood,*observation_--percentwood,, |
|
40 |
percentlitter,*observation_--percentlitter,, |
|
41 |
percentbaresoil,*observation_--percentbaresoil,, |
|
42 |
percentwater,*observation_--percentwater,, |
|
43 |
percentother,*observation_--percentother,, |
|
44 |
nameother,*observation_--nameother,, |
|
45 |
treeht,*observation_--treeht,, |
|
46 |
shrubht,*observation_--shrubht,, |
|
47 |
fieldht,*observation_--fieldht,, |
|
48 |
nonvascularht,*observation_--nonvascularht,, |
|
49 |
submergedht,*observation_--submergedht,, |
|
50 |
treecover,*observation_--treecover,, |
|
51 |
shrubcover,*observation_--shrubcover,, |
|
52 |
fieldcover,*observation_--fieldcover,, |
|
53 |
nonvascularcover,*observation_--nonvascularcover,, |
|
54 |
floatingcover,*observation_--floatingcover,, |
|
55 |
submergedcover,*observation_--submergedcover,, |
|
56 |
dominantstratum,*observation_--dominantstratum,, |
|
57 |
growthform1type,*observation_--growthform1type,, |
|
58 |
growthform2type,*observation_--growthform2type,, |
|
59 |
growthform3type,*observation_--growthform3type,, |
|
60 |
growthform1cover,*observation_--growthform1cover,, |
|
61 |
growthform2cover,*observation_--growthform2cover,, |
|
62 |
growthform3cover,*observation_--growthform3cover,, |
|
63 |
totalcover,*observation_--totalcover,, |
|
64 |
notespublic,*observation_--notespublic,, |
|
65 |
notesmgt,*observation_--notesmgt,, |
|
66 |
revisions,*observation_--revisions,, |
|
67 |
dateentered,*observation_--dateentered,, |
|
68 |
emb_observation,*observation_--emb_observation,, |
|
69 |
interp_orig_ci_id,*observation_--interp_orig_ci_id,, |
|
70 |
interp_orig_cc_id,*observation_--interp_orig_cc_id,, |
|
71 |
interp_orig_sciname,*observation_--interp_orig_sciname,, |
|
72 |
interp_orig_code,*observation_--interp_orig_code,, |
|
73 |
interp_orig_party_id,*observation_--interp_orig_party_id,, |
|
74 |
interp_orig_partyname,*observation_--interp_orig_partyname,, |
|
75 |
interp_current_ci_id,*observation_--interp_current_ci_id,, |
|
76 |
interp_current_cc_id,*observation_--interp_current_cc_id,, |
|
77 |
interp_current_sciname,*observation_--interp_current_sciname,, |
|
78 |
interp_current_code,*observation_--interp_current_code,, |
|
79 |
interp_current_party_id,*observation_--interp_current_party_id,, |
|
80 |
interp_current_partyname,*observation_--interp_current_partyname,, |
|
81 |
interp_bestfit_ci_id,*observation_--interp_bestfit_ci_id,, |
|
82 |
interp_bestfit_cc_id,*observation_--interp_bestfit_cc_id,, |
|
83 |
interp_bestfit_sciname,*observation_--interp_bestfit_sciname,, |
|
84 |
interp_bestfit_code,*observation_--interp_bestfit_code,, |
|
85 |
interp_bestfit_party_id,*observation_--interp_bestfit_party_id,, |
|
86 |
interp_bestfit_partyname,*observation_--interp_bestfit_partyname,, |
|
87 |
toptaxon1name,*observation_--toptaxon1name,, |
|
88 |
toptaxon2name,*observation_--toptaxon2name,, |
|
89 |
toptaxon3name,*observation_--toptaxon3name,, |
|
90 |
toptaxon4name,*observation_--toptaxon4name,, |
|
91 |
toptaxon5name,*observation_--toptaxon5name,, |
|
92 |
numberoftaxa,*observation_--numberoftaxa,, |
|
93 |
accessioncode,*observation_--accessioncode,, |
|
94 |
soilobs_id,*observation_--soilobs_id,, |
|
95 |
soilhorizon,*observation_--soilhorizon,, |
|
96 |
soildepthtop,*observation_--soildepthtop,, |
|
97 |
soildepthbottom,*observation_--soildepthbottom,, |
|
98 |
soilcolor,*observation_--soilcolor,, |
|
99 |
soilcoarse,*observation_--soilcoarse,,"""percent coarse fragments in the soil"" (soilCoarse definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
|
3 | 100 |
soilph,ph,, |
101 |
soildescription,*observation_--soildescription,, |
|
102 |
emb_soilobs,*observation_--emb_soilobs,, |
inputs/VegBank/observation_/unmapped_terms.csv | ||
---|---|---|
1 |
*previousobs_id |
|
2 |
*dateaccuracy |
|
3 |
*covermethod_id |
|
4 |
*coverdispersion |
|
5 |
*autotaxoncover |
|
6 |
*stratummethod_id |
|
7 |
*taxonobservationarea |
|
8 |
*stemsizelimit |
|
9 |
*stemobservationarea |
|
10 |
*stemsamplemethod |
|
11 |
*originaldata |
|
12 |
*effortlevel |
|
13 |
*plotvalidationlevel |
|
14 |
*floristicquality |
|
15 |
*bryophytequality |
|
16 |
*lichenquality |
|
17 |
*observationnarrative |
|
18 |
*landscapenarrative |
|
19 |
*homogeneity |
|
20 |
*phenologicaspect |
|
21 |
*representativeness |
|
22 |
*standmaturity |
|
23 |
*successionalstatus |
|
24 |
*basalarea |
|
25 |
*hydrologicregime |
|
26 |
*soilmoistureregime |
|
27 |
*soildrainage |
|
28 |
*watersalinity |
|
29 |
*waterdepth |
|
30 |
*shoredistance |
|
31 |
*soildepth |
|
32 |
*organicdepth |
|
33 |
*soiltaxon_id |
|
34 |
*soiltaxonsrc |
|
35 |
*percentbedrock |
|
36 |
*percentrockgravel |
|
37 |
*percentwood |
|
38 |
*percentlitter |
|
39 |
*percentbaresoil |
|
40 |
*percentwater |
|
41 |
*percentother |
|
42 |
*nameother |
|
43 |
*treeht |
|
44 |
*shrubht |
|
45 |
*fieldht |
|
46 |
*nonvascularht |
|
47 |
*submergedht |
|
48 |
*treecover |
|
49 |
*shrubcover |
|
50 |
*fieldcover |
|
51 |
*nonvascularcover |
|
52 |
*floatingcover |
|
53 |
*submergedcover |
|
54 |
*dominantstratum |
|
55 |
*growthform1type |
|
56 |
*growthform2type |
|
57 |
*growthform3type |
|
58 |
*growthform1cover |
|
59 |
*growthform2cover |
|
60 |
*growthform3cover |
|
61 |
*totalcover |
|
62 |
*notespublic |
|
63 |
*notesmgt |
|
64 |
*revisions |
|
65 |
*dateentered |
|
66 |
*emb_observation |
|
67 |
*interp_orig_ci_id |
|
68 |
*interp_orig_cc_id |
|
69 |
*interp_orig_sciname |
|
70 |
*interp_orig_code |
|
71 |
*interp_orig_party_id |
|
72 |
*interp_orig_partyname |
|
73 |
*interp_current_ci_id |
|
74 |
*interp_current_cc_id |
|
75 |
*interp_current_sciname |
|
76 |
*interp_current_code |
|
77 |
*interp_current_party_id |
|
78 |
*interp_current_partyname |
|
79 |
*interp_bestfit_ci_id |
|
80 |
*interp_bestfit_cc_id |
|
81 |
*interp_bestfit_sciname |
|
82 |
*interp_bestfit_code |
|
83 |
*interp_bestfit_party_id |
|
84 |
*interp_bestfit_partyname |
|
85 |
*toptaxon1name |
|
86 |
*toptaxon2name |
|
87 |
*toptaxon3name |
|
88 |
*toptaxon4name |
|
89 |
*toptaxon5name |
|
90 |
*numberoftaxa |
|
91 |
*accessioncode |
|
92 |
*soilobs_id |
|
93 |
*soilhorizon |
|
94 |
*soildepthtop |
|
95 |
*soildepthbottom |
|
96 |
*soilcolor |
|
97 |
*soilcoarse |
|
98 |
*soildescription |
|
99 |
*emb_soilobs |
|
1 |
*observation_--previousobs_id |
|
2 |
*observation_--dateaccuracy |
|
3 |
*observation_--covermethod_id |
|
4 |
*observation_--coverdispersion |
|
5 |
*observation_--autotaxoncover |
|
6 |
*observation_--stratummethod_id |
|
7 |
*observation_--taxonobservationarea |
|
8 |
*observation_--stemsizelimit |
|
9 |
*observation_--stemobservationarea |
|
10 |
*observation_--stemsamplemethod |
|
11 |
*observation_--originaldata |
|
12 |
*observation_--effortlevel |
|
13 |
*observation_--plotvalidationlevel |
|
14 |
*observation_--floristicquality |
|
15 |
*observation_--bryophytequality |
|
16 |
*observation_--lichenquality |
|
17 |
*observation_--observationnarrative |
|
18 |
*observation_--landscapenarrative |
|
19 |
*observation_--homogeneity |
|
20 |
*observation_--phenologicaspect |
|
21 |
*observation_--representativeness |
|
22 |
*observation_--standmaturity |
|
23 |
*observation_--successionalstatus |
|
24 |
*observation_--basalarea |
|
25 |
*observation_--hydrologicregime |
|
26 |
*observation_--soilmoistureregime |
|
27 |
*observation_--soildrainage |
|
28 |
*observation_--watersalinity |
|
29 |
*observation_--waterdepth |
|
30 |
*observation_--shoredistance |
|
31 |
*observation_--soildepth |
|
32 |
*observation_--organicdepth |
|
33 |
*observation_--soiltaxon_id |
|
34 |
*observation_--soiltaxonsrc |
|
35 |
*observation_--percentbedrock |
|
36 |
*observation_--percentrockgravel |
|
37 |
*observation_--percentwood |
|
38 |
*observation_--percentlitter |
|
39 |
*observation_--percentbaresoil |
|
40 |
*observation_--percentwater |
|
41 |
*observation_--percentother |
|
42 |
*observation_--nameother |
|
43 |
*observation_--treeht |
|
44 |
*observation_--shrubht |
|
45 |
*observation_--fieldht |
|
46 |
*observation_--nonvascularht |
|
47 |
*observation_--submergedht |
|
48 |
*observation_--treecover |
|
49 |
*observation_--shrubcover |
|
50 |
*observation_--fieldcover |
|
51 |
*observation_--nonvascularcover |
|
52 |
*observation_--floatingcover |
|
53 |
*observation_--submergedcover |
|
54 |
*observation_--dominantstratum |
|
55 |
*observation_--growthform1type |
|
56 |
*observation_--growthform2type |
|
57 |
*observation_--growthform3type |
|
58 |
*observation_--growthform1cover |
|
59 |
*observation_--growthform2cover |
|
60 |
*observation_--growthform3cover |
|
61 |
*observation_--totalcover |
|
62 |
*observation_--notespublic |
|
63 |
*observation_--notesmgt |
|
64 |
*observation_--revisions |
|
65 |
*observation_--dateentered |
|
66 |
*observation_--emb_observation |
|
67 |
*observation_--interp_orig_ci_id |
|
68 |
*observation_--interp_orig_cc_id |
|
69 |
*observation_--interp_orig_sciname |
|
70 |
*observation_--interp_orig_code |
|
71 |
*observation_--interp_orig_party_id |
|
72 |
*observation_--interp_orig_partyname |
|
73 |
*observation_--interp_current_ci_id |
|
74 |
*observation_--interp_current_cc_id |
|
75 |
*observation_--interp_current_sciname |
|
76 |
*observation_--interp_current_code |
|
77 |
*observation_--interp_current_party_id |
|
78 |
*observation_--interp_current_partyname |
|
79 |
*observation_--interp_bestfit_ci_id |
|
80 |
*observation_--interp_bestfit_cc_id |
|
81 |
*observation_--interp_bestfit_sciname |
|
82 |
*observation_--interp_bestfit_code |
|
83 |
*observation_--interp_bestfit_party_id |
|
84 |
*observation_--interp_bestfit_partyname |
|
85 |
*observation_--toptaxon1name |
|
86 |
*observation_--toptaxon2name |
|
87 |
*observation_--toptaxon3name |
|
88 |
*observation_--toptaxon4name |
|
89 |
*observation_--toptaxon5name |
|
90 |
*observation_--numberoftaxa |
|
91 |
*observation_--accessioncode |
|
92 |
*observation_--soilobs_id |
|
93 |
*observation_--soilhorizon |
|
94 |
*observation_--soildepthtop |
|
95 |
*observation_--soildepthbottom |
|
96 |
*observation_--soilcolor |
|
97 |
*observation_--soilcoarse |
|
98 |
*observation_--soildescription |
|
99 |
*observation_--emb_soilobs |
inputs/VegBank/stemlocation_/map.csv | ||
---|---|---|
4 | 4 |
stemcode,UNUSED#stemcode,, |
5 | 5 |
stemxposition,UNUSED#stemxposition,,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
6 | 6 |
stemyposition,UNUSED#stemyposition,,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
7 |
stemhealth,*stemhealth,,this *is* populated |
|
8 |
emb_stemlocation,*emb_stemlocation,, |
|
7 |
stemhealth,*stemlocation_--stemhealth,,this *is* populated
|
|
8 |
emb_stemlocation,*stemlocation_--emb_stemlocation,,
|
|
9 | 9 |
taxonimportance_id,aggregateOrganismObservationID__taxon_presence,, |
10 | 10 |
stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
11 |
stemdiameteraccuracy,*stemdiameteraccuracy,, |
|
11 |
stemdiameteraccuracy,*stemlocation_--stemdiameteraccuracy,,
|
|
12 | 12 |
stemheight,height_m,,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
13 |
stemheightaccuracy,*stemheightaccuracy,, |
|
13 |
stemheightaccuracy,*stemlocation_--stemheightaccuracy,,
|
|
14 | 14 |
stemcount,individualCount,, |
15 |
stemtaxonarea,*stemtaxonarea,, |
|
16 |
emb_stemcount,*emb_stemcount,, |
|
15 |
stemtaxonarea,*stemlocation_--stemtaxonarea,, |
|
16 |
emb_stemcount,*stemlocation_--emb_stemcount,, |
inputs/VegBank/stemlocation_/new_terms.csv | ||
---|---|---|
1 | 1 |
stemcount_id,aggregateOrganismObservationID__individual_count,, |
2 | 2 |
stemlocation_id,stemID,, |
3 |
stemhealth,*stemlocation_--stemhealth,,this *is* populated |
|
4 |
emb_stemlocation,*stemlocation_--emb_stemlocation,, |
|
3 | 5 |
taxonimportance_id,aggregateOrganismObservationID__taxon_presence,, |
4 | 6 |
stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
7 |
stemdiameteraccuracy,*stemlocation_--stemdiameteraccuracy,, |
|
8 |
stemheightaccuracy,*stemlocation_--stemheightaccuracy,, |
|
9 |
stemtaxonarea,*stemlocation_--stemtaxonarea,, |
|
10 |
emb_stemcount,*stemlocation_--emb_stemcount,, |
inputs/VegBank/stemlocation_/unmapped_terms.csv | ||
---|---|---|
1 | 1 |
aggregateOrganismObservationID__individual_count |
2 |
*stemhealth |
|
3 |
*emb_stemlocation |
|
2 |
*stemlocation_--stemhealth
|
|
3 |
*stemlocation_--emb_stemlocation
|
|
4 | 4 |
aggregateOrganismObservationID__taxon_presence |
5 |
*stemdiameteraccuracy |
|
6 |
*stemheightaccuracy |
|
7 |
*stemtaxonarea |
|
8 |
*emb_stemcount |
|
5 |
*stemlocation_--stemdiameteraccuracy |
|
6 |
*stemlocation_--stemheightaccuracy |
|
7 |
*stemlocation_--stemtaxonarea |
|
8 |
*stemlocation_--emb_stemcount |
inputs/VegBank/taxonobservation_/map.csv | ||
---|---|---|
1 | 1 |
VegBank,VegCore,Filter,Comments |
2 |
plantname_id,*plantname_id,, |
|
3 |
plantconcept_id,*plantconcept_id,, |
|
2 |
plantname_id,*taxonobservation_--plantname_id,,
|
|
3 |
plantconcept_id,*taxonobservation_--plantconcept_id,,
|
|
4 | 4 |
taxonobservation_id,taxonOccurrenceID,, |
5 | 5 |
observation_id,eventID,, |
6 | 6 |
authorplantname,originalScientificName,, |
7 |
taxonobservation_reference_id,*taxonobservation_reference_id,, |
|
8 |
taxoninferencearea,*taxoninferencearea,, |
|
9 |
emb_taxonobservation,*emb_taxonobservation,, |
|
10 |
int_origplantconcept_id,*int_origplantconcept_id,, |
|
7 |
taxonobservation_reference_id,*taxonobservation_--taxonobservation_reference_id,,
|
|
8 |
taxoninferencearea,*taxonobservation_--taxoninferencearea,,
|
|
9 |
emb_taxonobservation,*taxonobservation_--emb_taxonobservation,,
|
|
10 |
int_origplantconcept_id,*taxonobservation_--int_origplantconcept_id,,
|
|
11 | 11 |
int_origplantscifull,EQUIV#to:authorplantname#int_origplantscifull,, = originalScientificName_scrubbed |
12 | 12 |
int_origplantscinamenoauth,originalTaxonName,, |
13 | 13 |
int_origplantcommon,originalVernacularName,, |
14 |
int_origplantcode,*int_origplantcode,, |
|
15 |
int_currplantconcept_id,*int_currplantconcept_id,, |
|
14 |
int_origplantcode,*taxonobservation_--int_origplantcode,,
|
|
15 |
int_currplantconcept_id,*taxonobservation_--int_currplantconcept_id,,
|
|
16 | 16 |
int_currplantscifull,scientificName_verbatim,, |
17 | 17 |
int_currplantscinamenoauth,taxonName,, |
18 | 18 |
int_currplantcommon,vernacularName,, |
19 |
int_currplantcode,*int_currplantcode,, |
|
20 |
taxonobservation_accessioncode,*taxonobservation_accessioncode,, |
|
21 |
taxoninterpretation_id,*taxoninterpretation_id,, |
|
22 |
stemlocation_id,*stemlocation_id,, |
|
23 |
taxoninterpretation_plantname_id,*taxoninterpretation_plantname_id,, |
|
24 |
taxoninterpretation_party_id,*taxoninterpretation_party_id,, |
|
25 |
role_id,*role_id,, |
|
19 |
int_currplantcode,*taxonobservation_--int_currplantcode,,
|
|
20 |
taxonobservation_accessioncode,*taxonobservation_--taxonobservation_accessioncode,,
|
|
21 |
taxoninterpretation_id,*taxonobservation_--taxoninterpretation_id,,
|
|
22 |
stemlocation_id,*taxonobservation_--stemlocation_id,,
|
|
23 |
taxoninterpretation_plantname_id,*taxonobservation_--taxoninterpretation_plantname_id,,
|
|
24 |
taxoninterpretation_party_id,*taxonobservation_--taxoninterpretation_party_id,,
|
|
25 |
role_id,*taxonobservation_--role_id,,
|
|
26 | 26 |
interpretationtype,identificationType,, |
27 |
reference_id,*reference_id,, |
|
28 |
originalinterpretation,*originalinterpretation,, |
|
29 |
currentinterpretation,*currentinterpretation,, |
|
27 |
reference_id,*taxonobservation_--reference_id,,
|
|
28 |
originalinterpretation,*taxonobservation_--originalinterpretation,,
|
|
29 |
currentinterpretation,*taxonobservation_--currentinterpretation,,
|
|
30 | 30 |
taxonfit,identificationQualifier,, |
31 | 31 |
taxonconfidence,identificationVerificationStatus,, |
32 | 32 |
collector_id,UNUSED#collector_id,, |
33 | 33 |
collectionnumber,collectorNumber,, |
34 |
museum_id,*museum_id,, |
|
34 |
museum_id,*taxonobservation_--museum_id,,
|
|
35 | 35 |
museumaccessionnumber,accessionNumber,, |
36 |
grouptype,*grouptype,, |
|
36 |
grouptype,*taxonobservation_--grouptype,,
|
|
37 | 37 |
notes,occurrenceRemarks,, |
38 |
notespublic,*notespublic,, |
|
39 |
notesmgt,*notesmgt,, |
|
40 |
revisions,*revisions,, |
|
38 |
notespublic,*taxonobservation_--notespublic,,
|
|
39 |
notesmgt,*taxonobservation_--notesmgt,,
|
|
40 |
revisions,*taxonobservation_--revisions,,
|
|
41 | 41 |
interpretationdate,dateIdentified,, |
42 | 42 |
collectiondate,dateCollected,, |
43 |
emb_taxoninterpretation,*emb_taxoninterpretation,, |
|
44 |
taxoninterpretation_accessioncode,*taxoninterpretation_accessioncode,, |
|
45 |
plantconcept_reference_id,*plantconcept_reference_id,, |
|
43 |
emb_taxoninterpretation,*taxonobservation_--emb_taxoninterpretation,,
|
|
44 |
taxoninterpretation_accessioncode,*taxonobservation_--taxoninterpretation_accessioncode,,
|
|
45 |
plantconcept_reference_id,*taxonobservation_--plantconcept_reference_id,,
|
|
46 | 46 |
plantconcept_plantname,scientificName__for_nearest_taxon_concept,,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is." |
47 |
plantcode,*plantcode,, |
|
48 |
plantdescription,*plantdescription,, |
|
49 |
d_obscount,*d_obscount,, |
|
50 |
d_currentaccepted,*d_currentaccepted,, |
|
51 |
plantconcept_accessioncode,*plantconcept_accessioncode,, |
|
47 |
plantcode,*taxonobservation_--plantcode,,
|
|
48 |
plantdescription,*taxonobservation_--plantdescription,,
|
|
49 |
d_obscount,*taxonobservation_--d_obscount,,
|
|
50 |
d_currentaccepted,*taxonobservation_--d_currentaccepted,,
|
|
51 |
plantconcept_accessioncode,*taxonobservation_--plantconcept_accessioncode,,
|
|
52 | 52 |
Kingdom,kingdom,, |
53 |
Subkingdom,*Subkingdom,, |
|
54 |
Superdivision,*Superdivision,, |
|
55 |
Division,*Division,, |
|
56 |
Subdivision,*Subdivision,, |
|
53 |
Subkingdom,*taxonobservation_--Subkingdom,,
|
|
54 |
Superdivision,*taxonobservation_--Superdivision,,
|
|
55 |
Division,*taxonobservation_--Division,,
|
|
56 |
Subdivision,*taxonobservation_--Subdivision,,
|
|
57 | 57 |
Class,class,, |
58 |
Subclass,*Subclass,, |
|
58 |
Subclass,*taxonobservation_--Subclass,,
|
|
59 | 59 |
Order,order,, |
60 | 60 |
Family,family,, |
61 | 61 |
Genus,genus,,includes genus author |
62 |
Species,EQUIV#to:plantname#Species,,*full* taxonomic name at that rank |
|
63 |
Subspecies,EQUIV#to:plantname#Subspecies,,*full* taxonomic name at that rank |
|
64 |
Variety,EQUIV#to:plantname#Variety,,*full* taxonomic name at that rank |
|
65 |
Forma,EQUIV#to:plantname#Forma,,*full* taxonomic name at that rank |
|
62 |
Species,EQUIV#to:plantname#Species,,*taxonobservation_--full* taxonomic name at that rank
|
|
63 |
Subspecies,EQUIV#to:plantname#Subspecies,,*taxonobservation_--full* taxonomic name at that rank
|
|
64 |
Variety,EQUIV#to:plantname#Variety,,*taxonobservation_--full* taxonomic name at that rank
|
|
65 |
Forma,EQUIV#to:plantname#Forma,,*taxonobservation_--full* taxonomic name at that rank
|
|
66 | 66 |
plantname,DUPLICATE#of:plantconcept_plantname#plantname,,exact duplicate |
67 |
plantname_reference_id,*plantname_reference_id,, |
|
68 |
dateentered,*dateentered,, |
|
67 |
plantname_reference_id,*taxonobservation_--plantname_reference_id,,
|
|
68 |
dateentered,*taxonobservation_--dateentered,,
|
|
69 | 69 |
:plot,observationGranularity,, |
inputs/VegBank/taxonobservation_/new_terms.csv | ||
---|---|---|
1 |
plantname_id,*taxonobservation_--plantname_id,, |
|
2 |
plantconcept_id,*taxonobservation_--plantconcept_id,, |
|
1 | 3 |
observation_id,eventID,, |
4 |
taxoninferencearea,*taxonobservation_--taxoninferencearea,, |
|
5 |
emb_taxonobservation,*taxonobservation_--emb_taxonobservation,, |
|
6 |
int_origplantconcept_id,*taxonobservation_--int_origplantconcept_id,, |
|
2 | 7 |
int_origplantscifull,EQUIV#to:authorplantname#int_origplantscifull,, = originalScientificName_scrubbed |
3 | 8 |
int_origplantscinamenoauth,originalTaxonName,, |
4 | 9 |
int_origplantcommon,originalVernacularName,, |
10 |
int_origplantcode,*taxonobservation_--int_origplantcode,, |
|
11 |
int_currplantconcept_id,*taxonobservation_--int_currplantconcept_id,, |
|
5 | 12 |
int_currplantscifull,scientificName_verbatim,, |
6 | 13 |
int_currplantscinamenoauth,taxonName,, |
7 | 14 |
int_currplantcommon,vernacularName,, |
15 |
int_currplantcode,*taxonobservation_--int_currplantcode,, |
|
16 |
taxonobservation_accessioncode,*taxonobservation_--taxonobservation_accessioncode,, |
|
17 |
taxoninterpretation_id,*taxonobservation_--taxoninterpretation_id,, |
|
18 |
stemlocation_id,*taxonobservation_--stemlocation_id,, |
|
19 |
taxoninterpretation_plantname_id,*taxonobservation_--taxoninterpretation_plantname_id,, |
|
20 |
taxoninterpretation_party_id,*taxonobservation_--taxoninterpretation_party_id,, |
|
21 |
role_id,*taxonobservation_--role_id,, |
|
22 |
reference_id,*taxonobservation_--reference_id,, |
|
23 |
originalinterpretation,*taxonobservation_--originalinterpretation,, |
|
24 |
currentinterpretation,*taxonobservation_--currentinterpretation,, |
|
25 |
museum_id,*taxonobservation_--museum_id,, |
|
26 |
grouptype,*taxonobservation_--grouptype,, |
|
27 |
notespublic,*taxonobservation_--notespublic,, |
|
28 |
notesmgt,*taxonobservation_--notesmgt,, |
|
29 |
revisions,*taxonobservation_--revisions,, |
|
8 | 30 |
interpretationdate,dateIdentified,, |
9 | 31 |
collectiondate,dateCollected,, |
32 |
emb_taxoninterpretation,*taxonobservation_--emb_taxoninterpretation,, |
|
33 |
taxoninterpretation_accessioncode,*taxonobservation_--taxoninterpretation_accessioncode,, |
|
34 |
plantconcept_reference_id,*taxonobservation_--plantconcept_reference_id,, |
|
10 | 35 |
plantconcept_plantname,scientificName__for_nearest_taxon_concept,,"when int_currplantscifull also provided, this often leaves out lower ranks. however, int_currplantscifull is not always provided when this is." |
36 |
plantcode,*taxonobservation_--plantcode,, |
|
37 |
plantdescription,*taxonobservation_--plantdescription,, |
|
38 |
d_obscount,*taxonobservation_--d_obscount,, |
|
39 |
d_currentaccepted,*taxonobservation_--d_currentaccepted,, |
|
40 |
plantconcept_accessioncode,*taxonobservation_--plantconcept_accessioncode,, |
|
41 |
Subkingdom,*taxonobservation_--Subkingdom,, |
|
42 |
Superdivision,*taxonobservation_--Superdivision,, |
|
43 |
Division,*taxonobservation_--Division,, |
|
44 |
Subdivision,*taxonobservation_--Subdivision,, |
|
45 |
Subclass,*taxonobservation_--Subclass,, |
|
11 | 46 |
plantname,DUPLICATE#of:plantconcept_plantname#plantname,,exact duplicate |
47 |
plantname_reference_id,*taxonobservation_--plantname_reference_id,, |
|
48 |
dateentered,*taxonobservation_--dateentered,, |
inputs/VegBank/taxonobservation_/unmapped_terms.csv | ||
---|---|---|
1 |
*plantname_id |
|
2 |
*plantconcept_id |
|
3 |
*taxonobservation_reference_id |
|
4 |
*taxoninferencearea |
|
5 |
*emb_taxonobservation |
|
6 |
*int_origplantconcept_id |
|
1 |
*taxonobservation_--plantname_id
|
|
2 |
*taxonobservation_--plantconcept_id
|
|
3 |
*taxonobservation_--taxonobservation_reference_id
|
|
4 |
*taxonobservation_--taxoninferencearea
|
|
5 |
*taxonobservation_--emb_taxonobservation
|
|
6 |
*taxonobservation_--int_origplantconcept_id
|
|
7 | 7 |
originalVernacularName |
8 |
*int_origplantcode |
|
9 |
*int_currplantconcept_id |
|
8 |
*taxonobservation_--int_origplantcode
|
|
9 |
*taxonobservation_--int_currplantconcept_id
|
|
10 | 10 |
scientificName_verbatim |
11 | 11 |
vernacularName |
12 |
*int_currplantcode |
|
13 |
*taxonobservation_accessioncode |
|
14 |
*taxoninterpretation_id |
|
15 |
*stemlocation_id |
|
16 |
*taxoninterpretation_plantname_id |
|
17 |
*taxoninterpretation_party_id |
|
18 |
*role_id |
|
19 |
*reference_id |
|
20 |
*originalinterpretation |
|
21 |
*currentinterpretation |
|
12 |
*taxonobservation_--int_currplantcode
|
|
13 |
*taxonobservation_--taxonobservation_accessioncode
|
|
14 |
*taxonobservation_--taxoninterpretation_id
|
|
15 |
*taxonobservation_--stemlocation_id
|
|
16 |
*taxonobservation_--taxoninterpretation_plantname_id
|
|
17 |
*taxonobservation_--taxoninterpretation_party_id
|
|
18 |
*taxonobservation_--role_id
|
|
19 |
*taxonobservation_--reference_id
|
|
20 |
*taxonobservation_--originalinterpretation
|
|
21 |
*taxonobservation_--currentinterpretation
|
|
22 | 22 |
identificationVerificationStatus |
23 |
*museum_id |
|
24 |
*grouptype |
|
25 |
*notespublic |
|
26 |
*notesmgt |
|
27 |
*revisions |
|
28 |
*emb_taxoninterpretation |
|
29 |
*taxoninterpretation_accessioncode |
|
30 |
*plantconcept_reference_id |
|
23 |
*taxonobservation_--museum_id
|
|
24 |
*taxonobservation_--grouptype
|
|
25 |
*taxonobservation_--notespublic
|
|
26 |
*taxonobservation_--notesmgt
|
|
27 |
*taxonobservation_--revisions
|
|
28 |
*taxonobservation_--emb_taxoninterpretation
|
|
29 |
*taxonobservation_--taxoninterpretation_accessioncode
|
|
30 |
*taxonobservation_--plantconcept_reference_id
|
|
31 | 31 |
scientificName__for_nearest_taxon_concept |
32 |
*plantcode |
|
33 |
*plantdescription |
|
34 |
*d_obscount |
|
35 |
*d_currentaccepted |
|
36 |
*plantconcept_accessioncode |
|
37 |
*Subkingdom |
|
38 |
*Superdivision |
|
39 |
*Division |
|
40 |
*Subdivision |
|
41 |
*Subclass |
|
42 |
*plantname_reference_id |
|
43 |
*dateentered |
|
32 |
*taxonobservation_--plantcode |
|
33 |
*taxonobservation_--plantdescription |
|
34 |
*taxonobservation_--d_obscount |
|
35 |
*taxonobservation_--d_currentaccepted |
|
36 |
*taxonobservation_--plantconcept_accessioncode |
|
37 |
*taxonobservation_--Subkingdom |
|
38 |
*taxonobservation_--Superdivision |
|
39 |
*taxonobservation_--Division |
|
40 |
*taxonobservation_--Subdivision |
|
41 |
*taxonobservation_--Subclass |
|
42 |
*taxonobservation_--plantname_reference_id |
|
43 |
*taxonobservation_--dateentered |
inputs/VegBank/plot_/map.csv | ||
---|---|---|
1 | 1 |
VegBank,VegCore,Filter,Comments |
2 | 2 |
plot_id,locationID,, |
3 | 3 |
authorplotcode,locationName,, |
4 |
reference_id,*reference_id,, |
|
4 |
reference_id,*plot_--reference_id,,
|
|
5 | 5 |
parent_id,parentLocationID,, |
6 | 6 |
locationaccuracy,coordinateUncertaintyInMeters__from_coords,, |
7 | 7 |
confidentialitystatus,accessRights_verbatim,, |
8 |
confidentialityreason,*confidentialityreason,, |
|
8 |
confidentialityreason,*plot_--confidentialityreason,,
|
|
9 | 9 |
latitude,decimalLatitude,, |
10 | 10 |
longitude,decimalLongitude,, |
11 |
authore,*authore,, |
|
12 |
authorn,*authorn,, |
|
13 |
authorzone,*authorzone,, |
|
14 |
authordatum,*authordatum,, |
|
15 |
authorlocation,*authorlocation,, |
|
11 |
authore,*plot_--authore,,
|
|
12 |
authorn,*plot_--authorn,,
|
|
13 |
authorzone,*plot_--authorzone,,
|
|
14 |
authordatum,*plot_--authordatum,,
|
|
15 |
authorlocation,*plot_--authorlocation,,
|
|
16 | 16 |
locationnarrative,locality,, |
17 |
azimuth,*azimuth,, |
|
18 |
dsgpoly,*dsgpoly,, |
|
17 |
azimuth,*plot_--azimuth,,
|
|
18 |
dsgpoly,*plot_--dsgpoly,,
|
|
19 | 19 |
shape,footprintWKT,, |
20 | 20 |
area,plotArea_m2,,"""Total area of the plot in m2"" (area definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename>)" |
21 |
standsize,*standsize,, |
|
22 |
placementmethod,*placementmethod,, |
|
23 |
permanence,*permanence,, |
|
24 |
layoutnarrative,*layoutnarrative,, |
|
21 |
standsize,*plot_--standsize,,
|
|
22 |
placementmethod,*plot_--placementmethod,,
|
|
23 |
permanence,*plot_--permanence,,
|
|
24 |
layoutnarrative,*plot_--layoutnarrative,,
|
|
25 | 25 |
elevation,elevationInMeters,,"has only 5 decimal places of precision, with only 9s and random #s after that. ""The elevation of the plot origin in meters above sea level"" (elevation definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename>)" |
26 |
elevationaccuracy,*elevationaccuracy,, |
|
26 |
elevationaccuracy,*plot_--elevationaccuracy,,
|
|
27 | 27 |
elevationrange,UNUSED#elevationrange,, |
28 | 28 |
slopeaspect,slopeAspect,, |
29 | 29 |
minslopeaspect,minSlopeAspect,, |
... | ... | |
31 | 31 |
slopegradient,slopeGradient,, |
32 | 32 |
minslopegradient,minSlopeGradient,, |
33 | 33 |
maxslopegradient,maxSlopeGradient,, |
34 |
topoposition,*topoposition,, |
|
34 |
topoposition,*plot_--topoposition,,
|
|
35 | 35 |
landform,landform,, |
36 |
surficialdeposits,*surficialdeposits,, |
|
37 |
rocktype,*rocktype,, |
|
36 |
surficialdeposits,*plot_--surficialdeposits,,
|
|
37 |
rocktype,*plot_--rocktype,,
|
|
38 | 38 |
stateprovince,stateProvince,, |
39 | 39 |
country,country,, |
40 |
submitter_surname,*submitter_surname,, |
|
41 |
submitter_givenname,*submitter_givenname,, |
|
42 |
submitter_email,*submitter_email,, |
|
43 |
notespublic,*notespublic,, |
|
44 |
notesmgt,*notesmgt,, |
|
45 |
revisions,*revisions,, |
|
46 |
dateentered,*dateentered,, |
|
47 |
emb_plot,*emb_plot,, |
|
48 |
plotrationalenarrative,*plotrationalenarrative,, |
|
49 |
accessioncode,*accessioncode,, |
|
40 |
submitter_surname,*plot_--submitter_surname,,
|
|
41 |
submitter_givenname,*plot_--submitter_givenname,,
|
|
42 |
submitter_email,*plot_--submitter_email,,
|
|
43 |
notespublic,*plot_--notespublic,,
|
|
44 |
notesmgt,*plot_--notesmgt,,
|
|
45 |
revisions,*plot_--revisions,,
|
|
46 |
dateentered,*plot_--dateentered,,
|
|
47 |
emb_plot,*plot_--emb_plot,,
|
|
48 |
plotrationalenarrative,*plot_--plotrationalenarrative,,
|
|
49 |
accessioncode,*plot_--accessioncode,,
|
|
50 | 50 |
continent,continent,, |
51 | 51 |
area|country|territory,DUPLICATE#of:country#area|country|territory,, |
52 | 52 |
region|state|province,DUPLICATE#of:stateprovince#region|state|province,, |
53 | 53 |
county,county,, |
54 |
quadrangle,*quadrangle,, |
|
55 |
Geographic Name,*Geographic Name,, |
|
54 |
quadrangle,*plot_--quadrangle,, |
|
55 |
Geographic Name,*plot_--Geographic Name,, |
inputs/VegBank/plot_/new_terms.csv | ||
---|---|---|
1 |
reference_id,*plot_--reference_id,, |
|
1 | 2 |
parent_id,parentLocationID,, |
2 | 3 |
locationaccuracy,coordinateUncertaintyInMeters__from_coords,, |
3 | 4 |
confidentialitystatus,accessRights_verbatim,, |
5 |
confidentialityreason,*plot_--confidentialityreason,, |
|
6 |
authore,*plot_--authore,, |
|
7 |
authorn,*plot_--authorn,, |
|
8 |
authorzone,*plot_--authorzone,, |
|
9 |
authordatum,*plot_--authordatum,, |
|
10 |
authorlocation,*plot_--authorlocation,, |
|
11 |
azimuth,*plot_--azimuth,, |
|
12 |
dsgpoly,*plot_--dsgpoly,, |
|
4 | 13 |
shape,footprintWKT,, |
14 |
standsize,*plot_--standsize,, |
|
15 |
placementmethod,*plot_--placementmethod,, |
|
16 |
permanence,*plot_--permanence,, |
|
17 |
layoutnarrative,*plot_--layoutnarrative,, |
|
18 |
elevationaccuracy,*plot_--elevationaccuracy,, |
|
19 |
topoposition,*plot_--topoposition,, |
|
20 |
surficialdeposits,*plot_--surficialdeposits,, |
|
21 |
rocktype,*plot_--rocktype,, |
|
22 |
submitter_surname,*plot_--submitter_surname,, |
|
23 |
submitter_givenname,*plot_--submitter_givenname,, |
|
24 |
submitter_email,*plot_--submitter_email,, |
|
25 |
notespublic,*plot_--notespublic,, |
|
26 |
notesmgt,*plot_--notesmgt,, |
|
27 |
revisions,*plot_--revisions,, |
|
28 |
dateentered,*plot_--dateentered,, |
|
29 |
emb_plot,*plot_--emb_plot,, |
|
30 |
plotrationalenarrative,*plot_--plotrationalenarrative,, |
|
31 |
accessioncode,*plot_--accessioncode,, |
|
5 | 32 |
area|country|territory,DUPLICATE#of:country#area|country|territory,, |
6 | 33 |
region|state|province,DUPLICATE#of:stateprovince#region|state|province,, |
34 |
quadrangle,*plot_--quadrangle,, |
|
35 |
Geographic Name,*plot_--Geographic Name,, |
inputs/VegBank/plot_/unmapped_terms.csv | ||
---|---|---|
1 |
*reference_id |
|
1 |
*plot_--reference_id
|
|
2 | 2 |
coordinateUncertaintyInMeters__from_coords |
3 | 3 |
accessRights_verbatim |
4 |
*confidentialityreason |
|
5 |
*authore |
|
6 |
*authorn |
|
7 |
*authorzone |
|
8 |
*authordatum |
|
9 |
*authorlocation |
|
10 |
*azimuth |
|
11 |
*dsgpoly |
|
12 |
*standsize |
|
13 |
*placementmethod |
|
14 |
*permanence |
|
15 |
*layoutnarrative |
|
16 |
*elevationaccuracy |
|
17 |
*topoposition |
|
18 |
*surficialdeposits |
|
19 |
*rocktype |
|
20 |
*submitter_surname |
|
21 |
*submitter_givenname |
|
22 |
*submitter_email |
|
23 |
*notespublic |
|
24 |
*notesmgt |
|
25 |
*revisions |
|
26 |
*dateentered |
|
27 |
*emb_plot |
|
28 |
*plotrationalenarrative |
|
29 |
*accessioncode |
|
30 |
*quadrangle |
|
31 |
*Geographic Name |
|
4 |
*plot_--confidentialityreason |
|
5 |
*plot_--authore |
|
6 |
*plot_--authorn |
|
7 |
*plot_--authorzone |
|
8 |
*plot_--authordatum |
|
9 |
*plot_--authorlocation |
|
10 |
*plot_--azimuth |
|
11 |
*plot_--dsgpoly |
|
12 |
*plot_--standsize |
|
13 |
*plot_--placementmethod |
|
14 |
*plot_--permanence |
|
15 |
*plot_--layoutnarrative |
|
16 |
*plot_--elevationaccuracy |
|
17 |
*plot_--topoposition |
|
18 |
*plot_--surficialdeposits |
|
19 |
*plot_--rocktype |
|
20 |
*plot_--submitter_surname |
|
21 |
*plot_--submitter_givenname |
|
22 |
*plot_--submitter_email |
|
23 |
*plot_--notespublic |
|
24 |
*plot_--notesmgt |
|
25 |
*plot_--revisions |
|
26 |
*plot_--dateentered |
|
27 |
*plot_--emb_plot |
|
28 |
*plot_--plotrationalenarrative |
|
29 |
*plot_--accessioncode |
|
30 |
*plot_--quadrangle |
|
31 |
*plot_--Geographic Name |
Also available in: Unified diff
inputs/VegBank/: prepended the table name to each column name to prevent column collisions, using the steps at http://wiki.vegpath.org/Left-joining_a_datasource