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root/mappings/for_review/DwC-VegBIEN.specimens.csv @ 1095

1 1043 aaronmk 
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[bien.datasource=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2 745 aaronmk 
country,"//*_id/namedplace[placesystem=""area|country|territory""]/placename",Brad: Required; reject record if this field NULL,63
3 
stateProvince,"//*_id/namedplace[placesystem=""region|state|province""]/placename",,65
4 
county,//*_id/namedplace[placesystem=county]/placename,,66
5 1052 aaronmk 
coordinatePrecision,//location/locationdetermination[]/coordsaccuracy,,89
6 
coordinatePrecision/_noCV/value,//location/locationdetermination[]/coordsaccuracy/_noCV/value,,89
7 1025 aaronmk 
footprintWKT,//location/locationdetermination[]/footprintgeometry_dwc,,91
8 967 aaronmk 
locality,//location/locationnarrative/_alt/1,,68
9 
verbatimLocality,//location/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
10 1052 aaronmk 
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
11 
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
12 1071 aaronmk 
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/latitude,centerlatitude}/_alt/1/_nullIf/value",,85
13 
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/latitude,centerlatitude}/_alt/2/_nullIf/value",,81
14 
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/longitude,centerlongitude}/_alt/1/_nullIf/value",,86
15 
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/longitude,centerlongitude}/_alt/2/_nullIf/value",,82
16 1044 aaronmk 
habitat,//*/commname,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
17 
habitat/_merge/1,//*/commname/_merge/1,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
18 
habitat/_merge/2,//*/commname/_merge/2,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
19 970 aaronmk 
bien.substrate,//locationevent/landscapenarrative,,
20 816 aaronmk 
eventDate,//locationevent/obsstartdate,,44
21 
eventDate/_alt/1/_*/date,//locationevent/obsstartdate/_alt/1/_*/date,,44
22 
eventDate/_alt/2/_date/day,//locationevent/obsstartdate/_alt/2/_date/day,,44
23 
eventDate/_alt/2/_date/month,//locationevent/obsstartdate/_alt/2/_date/month,,44
24 
eventDate/_alt/2/_date/year,//locationevent/obsstartdate/_alt/2/_date/year,,44
25 745 aaronmk 
maximumDepthInMeters,//waterdepth/max,,75
26 741 aaronmk 
minimumDepthInMeters,//waterdepth/min,,74
27 745 aaronmk 
sex,"//taxonoccurrence/taxondetermination[rolecode=identifier]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
28 816 aaronmk 
dateIdentified,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate,,120
29 
dateIdentified/_alt/1/_*/date,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/1/_*/date,,120
30 
dateIdentified/_alt/2/_date/day,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/day,,120
31 
dateIdentified/_alt/2/_date/month,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/month,,120
32 
dateIdentified/_alt/2/_date/year,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_alt/2/_date/year,,120
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identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
34 
scientificName,//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/plantconcept/*_id/*/plantname/_alt/1,"Brad: Bob, Nick, please is this mapping OK?",134
35 
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
36 
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname",,144
37 
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname",,146
38 
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname",,147
39 
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
40 
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname",,145
41 
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname",,149
42 
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
43 914 aaronmk 
infraspecificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname",,150
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recordedBy,//taxonoccurrence/verbatimcollectorname,,23
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fieldNotes,/description,,
46 
fieldNotes/_merge/1,/description/_merge/1,,
47 
"fieldNotes/_merge/2/_label[label=""plant fungus""]/value","/description/_merge/2/_label[label=""plant fungus""]/value",,
48 
institutionCode,/{museum_id/party/organizationname/_name/first},,11
49 
collectionCode,"/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
50 915 aaronmk 
catalogNumber,/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
51 
recordNumber,/collectionnumber/_alt/1,,22
52 
collectionID,/collectionnumber/_alt/2,,9
53 
fieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
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bien.datasource,//party/organizationname/_alt/1,,
55 1044 aaronmk 
occurrenceID,/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
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acceptedNameUsage,,,135
57 
acceptedNameUsageID,,,128
58 
associatedMedia,,,36
59 
associatedOccurrences,,,38
60 
associatedReferences,,,37
61 
associatedSequences,,,39
62 
associatedTaxa,,,40
63 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
64 
bed,,,117
65 
behavior,,,29
66 741 aaronmk 
continent,,Brad: OMIT,59
67 
coordinateUncertaintyInMeters,,,88
68 745 aaronmk 
countryCode,,,64
69 741 aaronmk 
dataGeneralizations,,,17
70 745 aaronmk 
datasetID,,,10
71 
datasetName,,,13
72 
day,,Brad: OMIT,50
73 
dcterms:accessRights,,,5
74 741 aaronmk 
dcterms:bibliographicCitation,,,6
75 745 aaronmk 
dcterms:language,,,2
76 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
77 
dcterms:references,,,7
78 
dcterms:rights,,,3
79 
dcterms:rightsHolder,,,4
80 741 aaronmk 
dcterms:type,,,0
81 745 aaronmk 
disposition,,,33
82 
dynamicProperties,,,18
83 
earliestAgeOrLowestStage,,,109
84 
earliestEonOrLowestEonothem,,,101
85 
earliestEpochOrLowestSeries,,,107
86 
earliestEraOrLowestErathem,,,103
87 
earliestPeriodOrLowestSystem,,,105
88 
endDayOfYear,,,47
89 
establishmentMeans,,,30
90 741 aaronmk 
eventID,,,41
91 745 aaronmk 
eventRemarks,,,55
92 741 aaronmk 
eventTime,,Brad: OMIT,45
93 745 aaronmk 
footprintSRS,,,92
94 
footprintSpatialFit,,,93
95 
formation,,,115
96 
geodeticDatum,,,87
97 
geologicalContextID,,,100
98 
georeferenceProtocol,,,96
99 741 aaronmk 
georeferenceRemarks,,,99
100 
georeferenceSources,,,97
101 745 aaronmk 
georeferenceVerificationStatus,,,98
102 915 aaronmk 
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
103 745 aaronmk 
georeferencedDate,,,95
104 
group,,,114
105 
higherClassification,,,141
106 
higherGeography,,,58
107 
higherGeographyID,,,57
108 
highestBiostratigraphicZone,,,112
109 
identificationID,,,118
110 
identificationQualifier,,,124
111 741 aaronmk 
identificationReferences,,,121
112 745 aaronmk 
identificationRemarks,,,123
113 
identificationVerificationStatus,,,122
114 
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
115 915 aaronmk 
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
116 745 aaronmk 
informationWithheld,,,16
117 
institutionID,,,8
118 
island,,,62
119 
islandGroup,,,61
120 
latestAgeOrHighestStage,,,110
121 
latestEonOrHighestEonothem,,,102
122 
latestEpochOrHighestSeries,,,108
123 
latestEraOrHighestErathem,,,104
124 
latestPeriodOrHighestSystem,,,106
125 
lifeStage,,,27
126 
lithostratigraphicTerms,,,113
127 
locationAccordingTo,,,78
128 
locationID,,,56
129 
locationRemarks,,,79
130 
lowestBiostratigraphicZone,,,111
131 
maximumDistanceAboveSurfaceInMeters,,,77
132 
measurementAccuracy,,,169
133 
measurementDeterminedBy,,,172
134 
measurementDeterminedDate,,,171
135 
measurementID,,,166
136 
measurementMethod,,,173
137 741 aaronmk 
measurementRemarks,,,174
138 745 aaronmk 
measurementType,,,167
139 
measurementUnit,,,170
140 
measurementValue,,,168
141 
member,,,116
142 
minimumDistanceAboveSurfaceInMeters,,,76
143 
month,,,49
144 
municipality,,,67
145 
nameAccordingTo,,,138
146 
nameAccordingToID,,,131
147 
namePublishedIn,,,139
148 
namePublishedInID,,,132
149 
namePublishedInYear,,,140
150 
nomenclaturalCode,,,155
151 
nomenclaturalStatus,,,157
152 741 aaronmk 
occurrenceRemarks,,,21
153 745 aaronmk 
occurrenceStatus,,,31
154 
originalNameUsage,,,137
155 
originalNameUsageID,,,130
156 
otherCatalogNumbers,,,34
157 741 aaronmk 
ownerInstitutionCode,,,14
158 745 aaronmk 
parentNameUsage,,,136
159 
parentNameUsageID,,,129
160 
pointRadiusSpatialFit,,,90
161 
preparations,,Brad: OMIT,32
162 
previousIdentifications,,Brad: OMIT,35
163 
relatedResourceID,,Brad: OMIT,161
164 
relationshipAccordingTo,,,163
165 741 aaronmk 
relationshipEstablishedDate,,,164
166 745 aaronmk 
relationshipOfResource,,Brad: OMIT,162
167 741 aaronmk 
relationshipRemarks,,,165
168 745 aaronmk 
reproductiveCondition,,,28
169 
resourceID,,,160
170 
resourceRelationshipID,,,159
171 
samplingEffort,,,43
172 
samplingProtocol,,,42
173 
scientificNameID,,,127
174 741 aaronmk 
startDayOfYear,,,46
175 
subgenus,,,148
176 745 aaronmk 
taxonConceptID,,,133
177 741 aaronmk 
taxonID,,,126
178 745 aaronmk 
taxonRank,,,151
179 
taxonRemarks,,,158
180 
taxonomicStatus,,,156
181 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
182 741 aaronmk 
verbatimCoordinateSystem,,,83
183 745 aaronmk 
verbatimCoordinates,,,80
184 741 aaronmk 
verbatimDepth,,,73
185 
verbatimElevation,,,70
186 
verbatimEventDate,,,51
187 745 aaronmk 
verbatimSRS,,,84
188 
verbatimTaxonRank,,,152
189 
vernacularName,,,154
190 
waterBody,,,60
191 
year,,,48