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Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 10873 about 11 years Aaron Marcuse-Kubitza added backups/vegbien.r10848.backup.md5
  bin 10871 about 11 years Aaron Marcuse-Kubitza bugfix: bin/import_all: use reimport_scrub inst...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 10897 about 11 years Aaron Marcuse-Kubitza added derived/biengeo/Geovalidation_and_geoscru...
  exports 10853 about 11 years Aaron Marcuse-Kubitza exports/: svn:ignore *.zip
  inputs 10950 about 11 years Aaron Marcuse-Kubitza inputs/FIA/occurrence_all/: renamed to taxon_ob...
  lib 10946 about 11 years Aaron Marcuse-Kubitza lib/runscripts/datasrc_dir.run: added postproce...
  mappings 10848 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: don't map...
  planning 10951 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: added spac...
  schemas 10958 about 11 years Aaron Marcuse-Kubitza schemas/VegCore/VegCore.ERD.mwb: aggregate_obse...
  web 10894 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.6 KB 10539 over 11 years Aaron Marcuse-Kubitza bugfix: /Makefile: postgres-Linux: phppgadmin.c...
README.TXT 23.6 KB 10895 about 11 years Aaron Marcuse-Kubitza /README.TXT: Single datasource import: removed ...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 661 Bytes 10881 about 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): updated runtime (2...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
10958 09/15/2013 01:07 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: aggregate_observation: link to rather than being a taxa_sampling_event, because taxa_sampling_event was actually intended to be the container event in which various types of taxon_observations occur, rather than a type of taxon_observation itself. rearranged tables to avoid them covering any lines.

10957 09/14/2013 11:53 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: renamed GNRS & geovalidation steps to just geoscrubbing steps for clarity

10956 09/14/2013 11:48 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: taxon_occurrence: added within_place to allow easily locating all the taxon_occurrences in a plot. (some taxon_occurrences require within_place, but there was no common superclass field to allow joining to just a single table.)

10955 09/14/2013 11:24 PM Aaron Marcuse-Kubitza

schemas/VegCore/ERD/VegCore.ERD.png.map.htm: moved reobservable tables (individual, specimen, etc.) before aggregate_observation tables because these are less abstract

10954 09/14/2013 11:21 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: regenerated exports and udpated image map

10953 09/14/2013 11:15 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: individual_count: inherit from taxon_presence because this is also a type of taxon_observation (and specifically, a taxon_presence), in addition to the general taxon_presence it's associated with. it is possible e.g. for different diameter classes to be counted by different collectors, and thus to need separate taxon_observations to store the different collectors.

10952 09/14/2013 11:07 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: added taxon_occurrence to store the underlying occurrence for each taxon_observation. we cannot use reobservable for this because not all taxon_observations are reobservable, but the one-time observations still have an associated occurrence. moved reobservable.current_determination to taxon_occurrence and renamed it to current_observation (this can be used to find the latest observation for each occurrence).

10951 09/14/2013 09:47 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: added spacing between later column and weeks to make clear that dots in the later column do not correspond to a week

10950 09/14/2013 09:26 PM Aaron Marcuse-Kubitza

inputs/FIA/occurrence_all/: renamed to taxon_observation.** to clarify what an occurrence is. taxon_observation has the same meaning as in VegCore, where each taxon_determination is considered a separate taxon_observation of the associated specimen or vouchered plant (vegpath.org/VegCore/ERD/). (note that having multiple taxon_determinations only makes sense when there is something to reobserve.) the .** is SQL dotpath syntax (wiki.vegpath.org/SQL_dotpaths) for the recursive expansion of all tables to which taxon_observation has forward fkeys (i.e. "the left-join").

10949 09/14/2013 09:01 PM Aaron Marcuse-Kubitza

inputs/FIA/occurrence_all/postprocess.sql: use :table_str var instead of hardcoding the table name as occurrence_all, to avoid needing to change this file when renaming the view

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