Revision 11107
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/NY/Ecatalog_all/test.xml.ref | ||
|---|---|---|
| 31 | 31 |
</_locationnarrative_is_cultivated> |
| 32 | 32 |
</iscultivated> |
| 33 | 33 |
<locationevent> |
| 34 |
<taxonoccurrence> |
|
| 35 |
<aggregateoccurrence> |
|
| 36 |
<collectiondate> |
|
| 37 |
<_date> |
|
| 38 |
<day> |
|
| 39 |
<_nullIf> |
|
| 40 |
<null>0</null> |
|
| 41 |
<type>float</type> |
|
| 42 |
<value>$dayCollected</value> |
|
| 43 |
</_nullIf> |
|
| 44 |
</day> |
|
| 45 |
<month> |
|
| 46 |
<_nullIf> |
|
| 47 |
<null>0</null> |
|
| 48 |
<type>float</type> |
|
| 49 |
<value>$monthCollected</value> |
|
| 50 |
</_nullIf> |
|
| 51 |
</month> |
|
| 52 |
<year> |
|
| 53 |
<_nullIf> |
|
| 54 |
<null>0</null> |
|
| 55 |
<type>float</type> |
|
| 56 |
<value>$yearCollected</value> |
|
| 57 |
</_nullIf> |
|
| 58 |
</year> |
|
| 59 |
</_date> |
|
| 60 |
</collectiondate> |
|
| 61 |
<count>$individualCount</count> |
|
| 62 |
<notes>$occurrenceRemarks</notes> |
|
| 63 |
<plantobservation> |
|
| 64 |
<authorplantcode>$collectorNumber</authorplantcode> |
|
| 65 |
<definedvalue fkey="tablerecord_id"> |
|
| 66 |
<userdefined_id> |
|
| 67 |
<userdefined> |
|
| 68 |
<tablename>plantobservation</tablename> |
|
| 69 |
<userdefinedname>sex</userdefinedname> |
|
| 70 |
</userdefined> |
|
| 71 |
</userdefined_id> |
|
| 72 |
<definedvalue>$sex</definedvalue> |
|
| 73 |
</definedvalue> |
|
| 74 |
<specimenreplicate> |
|
| 75 |
<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
|
| 76 |
<collectioncode_dwc>$collection</collectioncode_dwc> |
|
| 77 |
<collectionnumber>$collectorNumber</collectionnumber> |
|
| 78 |
<institution_id> |
|
| 79 |
<sourcelist> |
|
| 80 |
<name>$specimenHolderInstitutions</name> |
|
| 81 |
<sourcename> |
|
| 82 |
<name> |
|
| 83 |
<_split> |
|
| 84 |
<separator>[,;] *</separator> |
|
| 85 |
<value>$specimenHolderInstitutions</value> |
|
| 86 |
</_split> |
|
| 87 |
</name> |
|
| 88 |
</sourcename> |
|
| 89 |
</sourcelist> |
|
| 90 |
</institution_id> |
|
| 91 |
</specimenreplicate> |
|
| 92 |
</plantobservation> |
|
| 93 |
</aggregateoccurrence> |
|
| 94 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 95 |
<taxondetermination> |
|
| 96 |
<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
|
| 97 |
<taxonverbatim_id> |
|
| 98 |
<taxonverbatim> |
|
| 99 |
<taxonlabel_id> |
|
| 100 |
<taxonlabel> |
|
| 101 |
<parent_id> |
|
| 102 |
<taxonlabel> |
|
| 103 |
<parent_id> |
|
| 104 |
<taxonlabel> |
|
| 105 |
<rank>cultivar</rank> |
|
| 106 |
<parent_id> |
|
| 107 |
<taxonlabel> |
|
| 108 |
<rank>forma</rank> |
|
| 109 |
<parent_id> |
|
| 110 |
<taxonlabel> |
|
| 111 |
<rank>variety</rank> |
|
| 112 |
<parent_id> |
|
| 113 |
<taxonlabel> |
|
| 114 |
<rank>subspecies</rank> |
|
| 115 |
<taxonepithet>$subspecies</taxonepithet> |
|
| 116 |
<parent_id> |
|
| 117 |
<taxonlabel> |
|
| 118 |
<rank>species</rank> |
|
| 119 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 120 |
<parent_id> |
|
| 121 |
<taxonlabel> |
|
| 122 |
<rank>genus</rank> |
|
| 123 |
<taxonepithet>$genus</taxonepithet> |
|
| 124 |
<parent_id> |
|
| 125 |
<taxonlabel> |
|
| 126 |
<rank>family</rank> |
|
| 127 |
<taxonepithet>$family</taxonepithet> |
|
| 128 |
<parent_id> |
|
| 129 |
<taxonlabel> |
|
| 130 |
<rank>order</rank> |
|
| 131 |
<taxonepithet>$order</taxonepithet> |
|
| 132 |
<parent_id> |
|
| 133 |
<taxonlabel> |
|
| 134 |
<rank>class</rank> |
|
| 135 |
<taxonepithet>$class</taxonepithet> |
|
| 136 |
<parent_id> |
|
| 137 |
<taxonlabel> |
|
| 138 |
<rank>phylum</rank> |
|
| 139 |
<taxonepithet>$phylum</taxonepithet> |
|
| 140 |
<parent_id> |
|
| 141 |
<taxonlabel> |
|
| 142 |
<rank>kingdom</rank> |
|
| 143 |
<taxonepithet>$kingdom</taxonepithet> |
|
| 144 |
</taxonlabel> |
|
| 145 |
</parent_id> |
|
| 146 |
</taxonlabel> |
|
| 147 |
</parent_id> |
|
| 148 |
</taxonlabel> |
|
| 149 |
</parent_id> |
|
| 150 |
</taxonlabel> |
|
| 151 |
</parent_id> |
|
| 152 |
</taxonlabel> |
|
| 153 |
</parent_id> |
|
| 154 |
</taxonlabel> |
|
| 155 |
</parent_id> |
|
| 156 |
</taxonlabel> |
|
| 157 |
</parent_id> |
|
| 158 |
</taxonlabel> |
|
| 159 |
</parent_id> |
|
| 160 |
</taxonlabel> |
|
| 161 |
</parent_id> |
|
| 162 |
</taxonlabel> |
|
| 163 |
</parent_id> |
|
| 164 |
</taxonlabel> |
|
| 165 |
</parent_id> |
|
| 166 |
</taxonlabel> |
|
| 167 |
</parent_id> |
|
| 168 |
<taxonomicname> |
|
| 169 |
<_merge_prefix> |
|
| 170 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 171 |
<value> |
|
| 172 |
<_join_words> |
|
| 173 |
<1> |
|
| 174 |
<_alt> |
|
| 175 |
<1>$taxonName</1> |
|
| 176 |
<2> |
|
| 177 |
<_join_words> |
|
| 178 |
<2><_filter_genus><value>$genus</value></_filter_genus></2> |
|
| 179 |
<3>$specificEpithet</3> |
|
| 180 |
<4>$subspecies</4> |
|
| 181 |
</_join_words> |
|
| 182 |
</2> |
|
| 183 |
</_alt> |
|
| 184 |
</1> |
|
| 185 |
<2>$scientificNameAuthorship</2> |
|
| 186 |
</_join_words> |
|
| 187 |
</value> |
|
| 188 |
</_merge_prefix> |
|
| 189 |
</taxonomicname> |
|
| 190 |
</taxonlabel> |
|
| 191 |
</taxonlabel_id> |
|
| 192 |
<author>$scientificNameAuthorship</author> |
|
| 193 |
<family>$family</family> |
|
| 194 |
<genus>$genus</genus> |
|
| 195 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 196 |
<taxonname>$taxonName</taxonname> |
|
| 197 |
</taxonverbatim> |
|
| 198 |
</taxonverbatim_id> |
|
| 199 |
<determinationdate> |
|
| 200 |
<_date> |
|
| 201 |
<day> |
|
| 202 |
<_nullIf> |
|
| 203 |
<null>0</null> |
|
| 204 |
<type>float</type> |
|
| 205 |
<value>$dayIdentified</value> |
|
| 206 |
</_nullIf> |
|
| 207 |
</day> |
|
| 208 |
<month> |
|
| 209 |
<_nullIf> |
|
| 210 |
<null>0</null> |
|
| 211 |
<type>float</type> |
|
| 212 |
<value>$monthIdentified</value> |
|
| 213 |
</_nullIf> |
|
| 214 |
</month> |
|
| 215 |
<year> |
|
| 216 |
<_nullIf> |
|
| 217 |
<null>0</null> |
|
| 218 |
<type>float</type> |
|
| 219 |
<value>$yearIdentified</value> |
|
| 220 |
</_nullIf> |
|
| 221 |
</year> |
|
| 222 |
</_date> |
|
| 223 |
</determinationdate> |
|
| 224 |
</taxondetermination> |
|
| 225 |
</taxonoccurrence> |
|
| 34 |
<locationevent fkey="parent_id"> |
|
| 35 |
<taxonoccurrence> |
|
| 36 |
<aggregateoccurrence> |
|
| 37 |
<collectiondate> |
|
| 38 |
<_date> |
|
| 39 |
<day> |
|
| 40 |
<_nullIf> |
|
| 41 |
<null>0</null> |
|
| 42 |
<type>float</type> |
|
| 43 |
<value>$dayCollected</value> |
|
| 44 |
</_nullIf> |
|
| 45 |
</day> |
|
| 46 |
<month> |
|
| 47 |
<_nullIf> |
|
| 48 |
<null>0</null> |
|
| 49 |
<type>float</type> |
|
| 50 |
<value>$monthCollected</value> |
|
| 51 |
</_nullIf> |
|
| 52 |
</month> |
|
| 53 |
<year> |
|
| 54 |
<_nullIf> |
|
| 55 |
<null>0</null> |
|
| 56 |
<type>float</type> |
|
| 57 |
<value>$yearCollected</value> |
|
| 58 |
</_nullIf> |
|
| 59 |
</year> |
|
| 60 |
</_date> |
|
| 61 |
</collectiondate> |
|
| 62 |
<count>$individualCount</count> |
|
| 63 |
<notes>$occurrenceRemarks</notes> |
|
| 64 |
<plantobservation> |
|
| 65 |
<authorplantcode>$collectorNumber</authorplantcode> |
|
| 66 |
<definedvalue fkey="tablerecord_id"> |
|
| 67 |
<userdefined_id> |
|
| 68 |
<userdefined> |
|
| 69 |
<tablename>plantobservation</tablename> |
|
| 70 |
<userdefinedname>sex</userdefinedname> |
|
| 71 |
</userdefined> |
|
| 72 |
</userdefined_id> |
|
| 73 |
<definedvalue>$sex</definedvalue> |
|
| 74 |
</definedvalue> |
|
| 75 |
<specimenreplicate> |
|
| 76 |
<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
|
| 77 |
<collectioncode_dwc>$collection</collectioncode_dwc> |
|
| 78 |
<collectionnumber>$collectorNumber</collectionnumber> |
|
| 79 |
<institution_id> |
|
| 80 |
<sourcelist> |
|
| 81 |
<name>$specimenHolderInstitutions</name> |
|
| 82 |
<sourcename> |
|
| 83 |
<name> |
|
| 84 |
<_split> |
|
| 85 |
<separator>[,;] *</separator> |
|
| 86 |
<value>$specimenHolderInstitutions</value> |
|
| 87 |
</_split> |
|
| 88 |
</name> |
|
| 89 |
</sourcename> |
|
| 90 |
</sourcelist> |
|
| 91 |
</institution_id> |
|
| 92 |
</specimenreplicate> |
|
| 93 |
</plantobservation> |
|
| 94 |
</aggregateoccurrence> |
|
| 95 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 96 |
<taxondetermination> |
|
| 97 |
<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
|
| 98 |
<taxonverbatim_id> |
|
| 99 |
<taxonverbatim> |
|
| 100 |
<taxonlabel_id> |
|
| 101 |
<taxonlabel> |
|
| 102 |
<parent_id> |
|
| 103 |
<taxonlabel> |
|
| 104 |
<parent_id> |
|
| 105 |
<taxonlabel> |
|
| 106 |
<rank>cultivar</rank> |
|
| 107 |
<parent_id> |
|
| 108 |
<taxonlabel> |
|
| 109 |
<rank>forma</rank> |
|
| 110 |
<parent_id> |
|
| 111 |
<taxonlabel> |
|
| 112 |
<rank>variety</rank> |
|
| 113 |
<parent_id> |
|
| 114 |
<taxonlabel> |
|
| 115 |
<rank>subspecies</rank> |
|
| 116 |
<taxonepithet>$subspecies</taxonepithet> |
|
| 117 |
<parent_id> |
|
| 118 |
<taxonlabel> |
|
| 119 |
<rank>species</rank> |
|
| 120 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 121 |
<parent_id> |
|
| 122 |
<taxonlabel> |
|
| 123 |
<rank>genus</rank> |
|
| 124 |
<taxonepithet>$genus</taxonepithet> |
|
| 125 |
<parent_id> |
|
| 126 |
<taxonlabel> |
|
| 127 |
<rank>family</rank> |
|
| 128 |
<taxonepithet>$family</taxonepithet> |
|
| 129 |
<parent_id> |
|
| 130 |
<taxonlabel> |
|
| 131 |
<rank>order</rank> |
|
| 132 |
<taxonepithet>$order</taxonepithet> |
|
| 133 |
<parent_id> |
|
| 134 |
<taxonlabel> |
|
| 135 |
<rank>class</rank> |
|
| 136 |
<taxonepithet>$class</taxonepithet> |
|
| 137 |
<parent_id> |
|
| 138 |
<taxonlabel> |
|
| 139 |
<rank>phylum</rank> |
|
| 140 |
<taxonepithet>$phylum</taxonepithet> |
|
| 141 |
<parent_id> |
|
| 142 |
<taxonlabel> |
|
| 143 |
<rank>kingdom</rank> |
|
| 144 |
<taxonepithet>$kingdom</taxonepithet> |
|
| 145 |
</taxonlabel> |
|
| 146 |
</parent_id> |
|
| 147 |
</taxonlabel> |
|
| 148 |
</parent_id> |
|
| 149 |
</taxonlabel> |
|
| 150 |
</parent_id> |
|
| 151 |
</taxonlabel> |
|
| 152 |
</parent_id> |
|
| 153 |
</taxonlabel> |
|
| 154 |
</parent_id> |
|
| 155 |
</taxonlabel> |
|
| 156 |
</parent_id> |
|
| 157 |
</taxonlabel> |
|
| 158 |
</parent_id> |
|
| 159 |
</taxonlabel> |
|
| 160 |
</parent_id> |
|
| 161 |
</taxonlabel> |
|
| 162 |
</parent_id> |
|
| 163 |
</taxonlabel> |
|
| 164 |
</parent_id> |
|
| 165 |
</taxonlabel> |
|
| 166 |
</parent_id> |
|
| 167 |
</taxonlabel> |
|
| 168 |
</parent_id> |
|
| 169 |
<taxonomicname> |
|
| 170 |
<_merge_prefix> |
|
| 171 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 172 |
<value> |
|
| 173 |
<_join_words> |
|
| 174 |
<1> |
|
| 175 |
<_alt> |
|
| 176 |
<1>$taxonName</1> |
|
| 177 |
<2> |
|
| 178 |
<_join_words> |
|
| 179 |
<2><_filter_genus><value>$genus</value></_filter_genus></2> |
|
| 180 |
<3>$specificEpithet</3> |
|
| 181 |
<4>$subspecies</4> |
|
| 182 |
</_join_words> |
|
| 183 |
</2> |
|
| 184 |
</_alt> |
|
| 185 |
</1> |
|
| 186 |
<2>$scientificNameAuthorship</2> |
|
| 187 |
</_join_words> |
|
| 188 |
</value> |
|
| 189 |
</_merge_prefix> |
|
| 190 |
</taxonomicname> |
|
| 191 |
</taxonlabel> |
|
| 192 |
</taxonlabel_id> |
|
| 193 |
<author>$scientificNameAuthorship</author> |
|
| 194 |
<family>$family</family> |
|
| 195 |
<genus>$genus</genus> |
|
| 196 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 197 |
<taxonname>$taxonName</taxonname> |
|
| 198 |
</taxonverbatim> |
|
| 199 |
</taxonverbatim_id> |
|
| 200 |
<determinationdate> |
|
| 201 |
<_date> |
|
| 202 |
<day> |
|
| 203 |
<_nullIf> |
|
| 204 |
<null>0</null> |
|
| 205 |
<type>float</type> |
|
| 206 |
<value>$dayIdentified</value> |
|
| 207 |
</_nullIf> |
|
| 208 |
</day> |
|
| 209 |
<month> |
|
| 210 |
<_nullIf> |
|
| 211 |
<null>0</null> |
|
| 212 |
<type>float</type> |
|
| 213 |
<value>$monthIdentified</value> |
|
| 214 |
</_nullIf> |
|
| 215 |
</month> |
|
| 216 |
<year> |
|
| 217 |
<_nullIf> |
|
| 218 |
<null>0</null> |
|
| 219 |
<type>float</type> |
|
| 220 |
<value>$yearIdentified</value> |
|
| 221 |
</_nullIf> |
|
| 222 |
</year> |
|
| 223 |
</_date> |
|
| 224 |
</determinationdate> |
|
| 225 |
</taxondetermination> |
|
| 226 |
</taxonoccurrence> |
|
| 227 |
</locationevent> |
|
| 226 | 228 |
<waterdepth_m> |
| 227 | 229 |
<_avg> |
| 228 | 230 |
<1>$minimumDepthInMeters</1> |
| inputs/CVS/stemCount_/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
CVS,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
taxonObservation_ID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
| 3 |
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
|
| 4 |
cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value, |
|
| 5 |
stemDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value, |
|
| 6 |
stemHeight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m, |
|
| 7 |
STEMCOUNT_ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode, |
|
| 8 |
taxonObservation_ID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 9 |
taxonObservation_ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
|
| 10 |
STEMCOUNT_ID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists", |
|
| 11 |
taxonObservation_ID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/cond/_exists", |
|
| 3 |
stemCount,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/count,
|
|
| 4 |
cover,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
|
|
| 5 |
stemDiameter,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,
|
|
| 6 |
stemHeight,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,
|
|
| 7 |
STEMCOUNT_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/sourceaccessioncode,
|
|
| 8 |
taxonObservation_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
| 9 |
taxonObservation_ID,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/1,
|
|
| 10 |
STEMCOUNT_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists",
|
|
| 11 |
taxonObservation_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/cond/_exists",
|
|
| 12 | 12 |
basalArea,,** No join mapping for *basalarea ** |
| 13 | 13 |
biomass,,** No join mapping for *biomass ** |
| 14 | 14 |
cust_cvs_StemFrequency,,** No join mapping for *cust_cvs_StemFrequency ** |
| inputs/CVS/observation_/test.xml.ref | ||
|---|---|---|
| 13 | 13 |
<project_id><project><sourceaccessioncode>$PROJECT_ID</sourceaccessioncode></project></project_id> |
| 14 | 14 |
<authoreventcode>$authorObsCode</authoreventcode> |
| 15 | 15 |
<sourceaccessioncode>$OBSERVATION_ID</sourceaccessioncode> |
| 16 |
<locationevent fkey="parent_id"><sourceaccessioncode>$OBSERVATION_ID</sourceaccessioncode></locationevent> |
|
| 16 | 17 |
<obsenddate>$obsEndDate</obsenddate> |
| 17 | 18 |
<obsstartdate>$obsStartDate</obsstartdate> |
| 18 | 19 |
<soilsample> |
| inputs/HVAA/Specimen/test.xml.ref | ||
|---|---|---|
| 50 | 50 |
</iscultivated> |
| 51 | 51 |
<locationevent> |
| 52 | 52 |
<method_id><method><name>$samplingProtocol</name></method></method_id> |
| 53 |
<taxonoccurrence> |
|
| 54 |
<aggregateoccurrence> |
|
| 55 |
<collectiondate> |
|
| 56 |
<_alt> |
|
| 57 |
<1>$dateCollected</1> |
|
| 58 |
<2> |
|
| 59 |
<_date> |
|
| 60 |
<day> |
|
| 61 |
<_nullIf> |
|
| 62 |
<null>0</null> |
|
| 63 |
<type>float</type> |
|
| 64 |
<value>$dayCollected</value> |
|
| 65 |
</_nullIf> |
|
| 66 |
</day> |
|
| 67 |
<month> |
|
| 68 |
<_nullIf> |
|
| 69 |
<null>0</null> |
|
| 70 |
<type>float</type> |
|
| 71 |
<value>$monthCollected</value> |
|
| 72 |
</_nullIf> |
|
| 73 |
</month> |
|
| 74 |
<year> |
|
| 75 |
<_nullIf> |
|
| 76 |
<null>0</null> |
|
| 77 |
<type>float</type> |
|
| 78 |
<value>$yearCollected</value> |
|
| 79 |
</_nullIf> |
|
| 80 |
</year> |
|
| 81 |
</_date> |
|
| 82 |
</2> |
|
| 83 |
</_alt> |
|
| 84 |
</collectiondate> |
|
| 85 |
<count>$individualCount</count> |
|
| 86 |
<notes>$occurrenceRemarks</notes> |
|
| 87 |
<plantobservation> |
|
| 88 |
<authorplantcode>$collectorNumber</authorplantcode> |
|
| 89 |
<definedvalue fkey="tablerecord_id"> |
|
| 90 |
<userdefined_id> |
|
| 91 |
<userdefined> |
|
| 92 |
<tablename>plantobservation</tablename> |
|
| 93 |
<userdefinedname>sex</userdefinedname> |
|
| 94 |
</userdefined> |
|
| 95 |
</userdefined_id> |
|
| 96 |
<definedvalue>$sex</definedvalue> |
|
| 97 |
</definedvalue> |
|
| 98 |
<reproductivecondition>$reproductiveCondition</reproductivecondition> |
|
| 99 |
<specimenreplicate> |
|
| 100 |
<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
|
| 101 |
<collectioncode_dwc>$collection</collectioncode_dwc> |
|
| 102 |
<collectionnumber>$collectorNumber</collectionnumber> |
|
| 103 |
<institution_id> |
|
| 104 |
<sourcelist> |
|
| 105 |
<name>$specimenHolderInstitutions</name> |
|
| 106 |
<sourcename> |
|
| 107 |
<name> |
|
| 108 |
<_split> |
|
| 109 |
<separator>[,;] *</separator> |
|
| 110 |
<value>$specimenHolderInstitutions</value> |
|
| 111 |
</_split> |
|
| 112 |
</name> |
|
| 113 |
</sourcename> |
|
| 114 |
</sourcelist> |
|
| 115 |
</institution_id> |
|
| 116 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 117 |
</specimenreplicate> |
|
| 118 |
</plantobservation> |
|
| 119 |
</aggregateoccurrence> |
|
| 120 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 121 |
<iscultivated> |
|
| 122 |
<_map> |
|
| 123 |
<cultivated>t</cultivated> |
|
| 124 |
<wild>f</wild> |
|
| 125 |
<*></*> |
|
| 126 |
<value>$establishmentMeans</value> |
|
| 127 |
</_map> |
|
| 128 |
</iscultivated> |
|
| 129 |
<isnative> |
|
| 130 |
<_map> |
|
| 131 |
<native>t</native> |
|
| 132 |
<exotic>f</exotic> |
|
| 133 |
<*></*> |
|
| 134 |
<value>$establishmentMeans</value> |
|
| 135 |
</_map> |
|
| 136 |
</isnative> |
|
| 137 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 138 |
<taxondetermination> |
|
| 139 |
<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
|
| 140 |
<taxonverbatim_id> |
|
| 141 |
<taxonverbatim> |
|
| 142 |
<taxonlabel_id> |
|
| 143 |
<taxonlabel> |
|
| 144 |
<parent_id> |
|
| 145 |
<taxonlabel> |
|
| 146 |
<rank>$taxonRank</rank> |
|
| 147 |
<parent_id> |
|
| 148 |
<taxonlabel> |
|
| 149 |
<rank>cultivar</rank> |
|
| 150 |
<parent_id> |
|
| 151 |
<taxonlabel> |
|
| 152 |
<rank>forma</rank> |
|
| 153 |
<parent_id> |
|
| 154 |
<taxonlabel> |
|
| 155 |
<rank>variety</rank> |
|
| 156 |
<parent_id> |
|
| 157 |
<taxonlabel> |
|
| 158 |
<rank>subspecies</rank> |
|
| 159 |
<parent_id> |
|
| 160 |
<taxonlabel> |
|
| 161 |
<rank>species</rank> |
|
| 162 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 163 |
<parent_id> |
|
| 164 |
<taxonlabel> |
|
| 165 |
<rank>genus</rank> |
|
| 166 |
<taxonepithet>$genus</taxonepithet> |
|
| 167 |
<parent_id> |
|
| 168 |
<taxonlabel> |
|
| 169 |
<rank>family</rank> |
|
| 170 |
<taxonepithet>$family</taxonepithet> |
|
| 171 |
</taxonlabel> |
|
| 172 |
</parent_id> |
|
| 173 |
</taxonlabel> |
|
| 174 |
</parent_id> |
|
| 175 |
</taxonlabel> |
|
| 176 |
</parent_id> |
|
| 177 |
</taxonlabel> |
|
| 178 |
</parent_id> |
|
| 179 |
</taxonlabel> |
|
| 180 |
</parent_id> |
|
| 181 |
</taxonlabel> |
|
| 182 |
</parent_id> |
|
| 183 |
</taxonlabel> |
|
| 184 |
</parent_id> |
|
| 185 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
| 186 |
</taxonlabel> |
|
| 187 |
</parent_id> |
|
| 188 |
<rank>$taxonRank</rank> |
|
| 189 |
<taxonomicname> |
|
| 190 |
<_merge_prefix> |
|
| 191 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 192 |
<value> |
|
| 193 |
<_alt> |
|
| 194 |
<1>$scientificName</1> |
|
| 195 |
<2> |
|
| 196 |
<_join_words> |
|
| 197 |
<1> |
|
| 198 |
<_join_words> |
|
| 199 |
<2><_filter_genus><value>$genus</value></_filter_genus></2> |
|
| 200 |
<3>$specificEpithet</3> |
|
| 201 |
<5> |
|
| 202 |
<_join_words> |
|
| 203 |
<1> |
|
| 204 |
<_if name="if has infraspecificEpithet"> |
|
| 205 |
<cond>$infraspecificEpithet</cond> |
|
| 206 |
<then>$taxonRank</then> |
|
| 207 |
</_if> |
|
| 208 |
</1> |
|
| 209 |
<2>$infraspecificEpithet</2> |
|
| 210 |
</_join_words> |
|
| 211 |
</5> |
|
| 212 |
</_join_words> |
|
| 213 |
</1> |
|
| 214 |
<2>$scientificNameAuthorship</2> |
|
| 215 |
</_join_words> |
|
| 216 |
</2> |
|
| 217 |
</_alt> |
|
| 218 |
</value> |
|
| 219 |
</_merge_prefix> |
|
| 220 |
</taxonomicname> |
|
| 221 |
</taxonlabel> |
|
| 222 |
</taxonlabel_id> |
|
| 223 |
<author>$scientificNameAuthorship</author> |
|
| 224 |
<family>$family</family> |
|
| 225 |
<genus>$genus</genus> |
|
| 226 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 227 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 228 |
<verbatimrank>$taxonRank</verbatimrank> |
|
| 229 |
</taxonverbatim> |
|
| 230 |
</taxonverbatim_id> |
|
| 231 |
<determinationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></determinationdate> |
|
| 232 |
<notes>$taxonRemarks</notes> |
|
| 233 |
<taxonfit>$identificationQualifier</taxonfit> |
|
| 234 |
</taxondetermination> |
|
| 235 |
</taxonoccurrence> |
|
| 53 |
<locationevent fkey="parent_id"> |
|
| 54 |
<taxonoccurrence> |
|
| 55 |
<aggregateoccurrence> |
|
| 56 |
<collectiondate> |
|
| 57 |
<_alt> |
|
| 58 |
<1>$dateCollected</1> |
|
| 59 |
<2> |
|
| 60 |
<_date> |
|
| 61 |
<day> |
|
| 62 |
<_nullIf> |
|
| 63 |
<null>0</null> |
|
| 64 |
<type>float</type> |
|
| 65 |
<value>$dayCollected</value> |
|
| 66 |
</_nullIf> |
|
| 67 |
</day> |
|
| 68 |
<month> |
|
| 69 |
<_nullIf> |
|
| 70 |
<null>0</null> |
|
| 71 |
<type>float</type> |
|
| 72 |
<value>$monthCollected</value> |
|
| 73 |
</_nullIf> |
|
| 74 |
</month> |
|
| 75 |
<year> |
|
| 76 |
<_nullIf> |
|
| 77 |
<null>0</null> |
|
| 78 |
<type>float</type> |
|
| 79 |
<value>$yearCollected</value> |
|
| 80 |
</_nullIf> |
|
| 81 |
</year> |
|
| 82 |
</_date> |
|
| 83 |
</2> |
|
| 84 |
</_alt> |
|
| 85 |
</collectiondate> |
|
| 86 |
<count>$individualCount</count> |
|
| 87 |
<notes>$occurrenceRemarks</notes> |
|
| 88 |
<plantobservation> |
|
| 89 |
<authorplantcode>$collectorNumber</authorplantcode> |
|
| 90 |
<definedvalue fkey="tablerecord_id"> |
|
| 91 |
<userdefined_id> |
|
| 92 |
<userdefined> |
|
| 93 |
<tablename>plantobservation</tablename> |
|
| 94 |
<userdefinedname>sex</userdefinedname> |
|
| 95 |
</userdefined> |
|
| 96 |
</userdefined_id> |
|
| 97 |
<definedvalue>$sex</definedvalue> |
|
| 98 |
</definedvalue> |
|
| 99 |
<reproductivecondition>$reproductiveCondition</reproductivecondition> |
|
| 100 |
<specimenreplicate> |
|
| 101 |
<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
|
| 102 |
<collectioncode_dwc>$collection</collectioncode_dwc> |
|
| 103 |
<collectionnumber>$collectorNumber</collectionnumber> |
|
| 104 |
<institution_id> |
|
| 105 |
<sourcelist> |
|
| 106 |
<name>$specimenHolderInstitutions</name> |
|
| 107 |
<sourcename> |
|
| 108 |
<name> |
|
| 109 |
<_split> |
|
| 110 |
<separator>[,;] *</separator> |
|
| 111 |
<value>$specimenHolderInstitutions</value> |
|
| 112 |
</_split> |
|
| 113 |
</name> |
|
| 114 |
</sourcename> |
|
| 115 |
</sourcelist> |
|
| 116 |
</institution_id> |
|
| 117 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 118 |
</specimenreplicate> |
|
| 119 |
</plantobservation> |
|
| 120 |
</aggregateoccurrence> |
|
| 121 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 122 |
<iscultivated> |
|
| 123 |
<_map> |
|
| 124 |
<cultivated>t</cultivated> |
|
| 125 |
<wild>f</wild> |
|
| 126 |
<*></*> |
|
| 127 |
<value>$establishmentMeans</value> |
|
| 128 |
</_map> |
|
| 129 |
</iscultivated> |
|
| 130 |
<isnative> |
|
| 131 |
<_map> |
|
| 132 |
<native>t</native> |
|
| 133 |
<exotic>f</exotic> |
|
| 134 |
<*></*> |
|
| 135 |
<value>$establishmentMeans</value> |
|
| 136 |
</_map> |
|
| 137 |
</isnative> |
|
| 138 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 139 |
<taxondetermination> |
|
| 140 |
<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
|
| 141 |
<taxonverbatim_id> |
|
| 142 |
<taxonverbatim> |
|
| 143 |
<taxonlabel_id> |
|
| 144 |
<taxonlabel> |
|
| 145 |
<parent_id> |
|
| 146 |
<taxonlabel> |
|
| 147 |
<rank>$taxonRank</rank> |
|
| 148 |
<parent_id> |
|
| 149 |
<taxonlabel> |
|
| 150 |
<rank>cultivar</rank> |
|
| 151 |
<parent_id> |
|
| 152 |
<taxonlabel> |
|
| 153 |
<rank>forma</rank> |
|
| 154 |
<parent_id> |
|
| 155 |
<taxonlabel> |
|
| 156 |
<rank>variety</rank> |
|
| 157 |
<parent_id> |
|
| 158 |
<taxonlabel> |
|
| 159 |
<rank>subspecies</rank> |
|
| 160 |
<parent_id> |
|
| 161 |
<taxonlabel> |
|
| 162 |
<rank>species</rank> |
|
| 163 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 164 |
<parent_id> |
|
| 165 |
<taxonlabel> |
|
| 166 |
<rank>genus</rank> |
|
| 167 |
<taxonepithet>$genus</taxonepithet> |
|
| 168 |
<parent_id> |
|
| 169 |
<taxonlabel> |
|
| 170 |
<rank>family</rank> |
|
| 171 |
<taxonepithet>$family</taxonepithet> |
|
| 172 |
</taxonlabel> |
|
| 173 |
</parent_id> |
|
| 174 |
</taxonlabel> |
|
| 175 |
</parent_id> |
|
| 176 |
</taxonlabel> |
|
| 177 |
</parent_id> |
|
| 178 |
</taxonlabel> |
|
| 179 |
</parent_id> |
|
| 180 |
</taxonlabel> |
|
| 181 |
</parent_id> |
|
| 182 |
</taxonlabel> |
|
| 183 |
</parent_id> |
|
| 184 |
</taxonlabel> |
|
| 185 |
</parent_id> |
|
| 186 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
| 187 |
</taxonlabel> |
|
| 188 |
</parent_id> |
|
| 189 |
<rank>$taxonRank</rank> |
|
| 190 |
<taxonomicname> |
|
| 191 |
<_merge_prefix> |
|
| 192 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 193 |
<value> |
|
| 194 |
<_alt> |
|
| 195 |
<1>$scientificName</1> |
|
| 196 |
<2> |
|
| 197 |
<_join_words> |
|
| 198 |
<1> |
|
| 199 |
<_join_words> |
|
| 200 |
<2><_filter_genus><value>$genus</value></_filter_genus></2> |
|
| 201 |
<3>$specificEpithet</3> |
|
| 202 |
<5> |
|
| 203 |
<_join_words> |
|
| 204 |
<1> |
|
| 205 |
<_if name="if has infraspecificEpithet"> |
|
| 206 |
<cond>$infraspecificEpithet</cond> |
|
| 207 |
<then>$taxonRank</then> |
|
| 208 |
</_if> |
|
| 209 |
</1> |
|
| 210 |
<2>$infraspecificEpithet</2> |
|
| 211 |
</_join_words> |
|
| 212 |
</5> |
|
| 213 |
</_join_words> |
|
| 214 |
</1> |
|
| 215 |
<2>$scientificNameAuthorship</2> |
|
| 216 |
</_join_words> |
|
| 217 |
</2> |
|
| 218 |
</_alt> |
|
| 219 |
</value> |
|
| 220 |
</_merge_prefix> |
|
| 221 |
</taxonomicname> |
|
| 222 |
</taxonlabel> |
|
| 223 |
</taxonlabel_id> |
|
| 224 |
<author>$scientificNameAuthorship</author> |
|
| 225 |
<family>$family</family> |
|
| 226 |
<genus>$genus</genus> |
|
| 227 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 228 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 229 |
<verbatimrank>$taxonRank</verbatimrank> |
|
| 230 |
</taxonverbatim> |
|
| 231 |
</taxonverbatim_id> |
|
| 232 |
<determinationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></determinationdate> |
|
| 233 |
<notes>$taxonRemarks</notes> |
|
| 234 |
<taxonfit>$identificationQualifier</taxonfit> |
|
| 235 |
</taxondetermination> |
|
| 236 |
</taxonoccurrence> |
|
| 237 |
</locationevent> |
|
| 236 | 238 |
</locationevent> |
| 237 | 239 |
<locationnarrative> |
| 238 | 240 |
<_merge> |
| inputs/MT/Specimen/test.xml.ref | ||
|---|---|---|
| 11 | 11 |
<accessconditions>$rights</accessconditions> |
| 12 | 12 |
<iscultivated><_locationnarrative_is_cultivated><locationnarrative>$locality</locationnarrative></_locationnarrative_is_cultivated></iscultivated> |
| 13 | 13 |
<locationevent> |
| 14 |
<taxonoccurrence> |
|
| 15 |
<aggregateoccurrence> |
|
| 16 |
<count>$individualCount</count> |
|
| 17 |
<notes>$occurrenceRemarks</notes> |
|
| 18 |
<plantobservation> |
|
| 19 |
<specimenreplicate> |
|
| 20 |
<collectioncode_dwc> |
|
| 21 |
<_alt> |
|
| 22 |
<1>$collection</1> |
|
| 23 |
<2>$collectionURL</2> |
|
| 24 |
</_alt> |
|
| 25 |
</collectioncode_dwc> |
|
| 26 |
<institution_id> |
|
| 27 |
<sourcelist> |
|
| 28 |
<name>$specimenHolderInstitutions</name> |
|
| 29 |
<sourcename> |
|
| 30 |
<name> |
|
| 31 |
<_split> |
|
| 32 |
<separator>[,;] *</separator> |
|
| 33 |
<value>$specimenHolderInstitutions</value> |
|
| 34 |
</_split> |
|
| 35 |
</name> |
|
| 36 |
</sourcename> |
|
| 37 |
</sourcelist> |
|
| 38 |
</institution_id> |
|
| 39 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode> |
|
| 40 |
</specimenreplicate> |
|
| 41 |
</plantobservation> |
|
| 42 |
</aggregateoccurrence> |
|
| 43 |
<iscultivated> |
|
| 44 |
<_map> |
|
| 45 |
<cultivated>t</cultivated> |
|
| 46 |
<wild>f</wild> |
|
| 47 |
<*></*> |
|
| 48 |
<value>$establishmentMeans</value> |
|
| 49 |
</_map> |
|
| 50 |
</iscultivated> |
|
| 51 |
<isnative> |
|
| 52 |
<_map> |
|
| 53 |
<native>t</native> |
|
| 54 |
<exotic>f</exotic> |
|
| 55 |
<*></*> |
|
| 56 |
<value>$establishmentMeans</value> |
|
| 57 |
</_map> |
|
| 58 |
</isnative> |
|
| 59 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode> |
|
| 60 |
<taxondetermination> |
|
| 61 |
<taxonverbatim_id> |
|
| 62 |
<taxonverbatim> |
|
| 63 |
<taxonlabel_id> |
|
| 64 |
<taxonlabel> |
|
| 65 |
<parent_id> |
|
| 66 |
<taxonlabel> |
|
| 67 |
<parent_id> |
|
| 68 |
<taxonlabel> |
|
| 69 |
<rank>cultivar</rank> |
|
| 70 |
<parent_id> |
|
| 71 |
<taxonlabel> |
|
| 72 |
<rank>forma</rank> |
|
| 73 |
<parent_id> |
|
| 74 |
<taxonlabel> |
|
| 75 |
<rank>variety</rank> |
|
| 76 |
<parent_id> |
|
| 77 |
<taxonlabel> |
|
| 78 |
<rank>subspecies</rank> |
|
| 79 |
<parent_id> |
|
| 80 |
<taxonlabel> |
|
| 81 |
<rank>species</rank> |
|
| 82 |
<parent_id> |
|
| 83 |
<taxonlabel> |
|
| 84 |
<rank>genus</rank> |
|
| 85 |
<taxonepithet>$genus</taxonepithet> |
|
| 86 |
<parent_id> |
|
| 87 |
<taxonlabel> |
|
| 88 |
<rank>family</rank> |
|
| 89 |
<taxonepithet>$family</taxonepithet> |
|
| 90 |
</taxonlabel> |
|
| 91 |
</parent_id> |
|
| 92 |
</taxonlabel> |
|
| 93 |
</parent_id> |
|
| 94 |
</taxonlabel> |
|
| 95 |
</parent_id> |
|
| 96 |
</taxonlabel> |
|
| 97 |
</parent_id> |
|
| 98 |
</taxonlabel> |
|
| 99 |
</parent_id> |
|
| 100 |
</taxonlabel> |
|
| 101 |
</parent_id> |
|
| 102 |
</taxonlabel> |
|
| 103 |
</parent_id> |
|
| 104 |
</taxonlabel> |
|
| 105 |
</parent_id> |
|
| 106 |
<taxonomicname> |
|
| 107 |
<_merge_prefix> |
|
| 108 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 109 |
<value><_filter_genus><value>$genus</value></_filter_genus></value> |
|
| 110 |
</_merge_prefix> |
|
| 111 |
</taxonomicname> |
|
| 112 |
</taxonlabel> |
|
| 113 |
</taxonlabel_id> |
|
| 114 |
<family>$family</family> |
|
| 115 |
<genus>$genus</genus> |
|
| 116 |
</taxonverbatim> |
|
| 117 |
</taxonverbatim_id> |
|
| 118 |
</taxondetermination> |
|
| 119 |
</taxonoccurrence> |
|
| 14 |
<locationevent fkey="parent_id"> |
|
| 15 |
<taxonoccurrence> |
|
| 16 |
<aggregateoccurrence> |
|
| 17 |
<count>$individualCount</count> |
|
| 18 |
<notes>$occurrenceRemarks</notes> |
|
| 19 |
<plantobservation> |
|
| 20 |
<specimenreplicate> |
|
| 21 |
<collectioncode_dwc> |
|
| 22 |
<_alt> |
|
| 23 |
<1>$collection</1> |
|
| 24 |
<2>$collectionURL</2> |
|
| 25 |
</_alt> |
|
| 26 |
</collectioncode_dwc> |
|
| 27 |
<institution_id> |
|
| 28 |
<sourcelist> |
|
| 29 |
<name>$specimenHolderInstitutions</name> |
|
| 30 |
<sourcename> |
|
| 31 |
<name> |
|
| 32 |
<_split> |
|
| 33 |
<separator>[,;] *</separator> |
|
| 34 |
<value>$specimenHolderInstitutions</value> |
|
| 35 |
</_split> |
|
| 36 |
</name> |
|
| 37 |
</sourcename> |
|
| 38 |
</sourcelist> |
|
| 39 |
</institution_id> |
|
| 40 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode> |
|
| 41 |
</specimenreplicate> |
|
| 42 |
</plantobservation> |
|
| 43 |
</aggregateoccurrence> |
|
| 44 |
<iscultivated> |
|
| 45 |
<_map> |
|
| 46 |
<cultivated>t</cultivated> |
|
| 47 |
<wild>f</wild> |
|
| 48 |
<*></*> |
|
| 49 |
<value>$establishmentMeans</value> |
|
| 50 |
</_map> |
|
| 51 |
</iscultivated> |
|
| 52 |
<isnative> |
|
| 53 |
<_map> |
|
| 54 |
<native>t</native> |
|
| 55 |
<exotic>f</exotic> |
|
| 56 |
<*></*> |
|
| 57 |
<value>$establishmentMeans</value> |
|
| 58 |
</_map> |
|
| 59 |
</isnative> |
|
| 60 |
<sourceaccessioncode>$dataProviderRecordID</sourceaccessioncode> |
|
| 61 |
<taxondetermination> |
|
| 62 |
<taxonverbatim_id> |
|
| 63 |
<taxonverbatim> |
|
| 64 |
<taxonlabel_id> |
|
| 65 |
<taxonlabel> |
|
| 66 |
<parent_id> |
|
| 67 |
<taxonlabel> |
|
| 68 |
<parent_id> |
|
| 69 |
<taxonlabel> |
|
| 70 |
<rank>cultivar</rank> |
|
| 71 |
<parent_id> |
|
| 72 |
<taxonlabel> |
|
| 73 |
<rank>forma</rank> |
|
| 74 |
<parent_id> |
|
| 75 |
<taxonlabel> |
|
| 76 |
<rank>variety</rank> |
|
| 77 |
<parent_id> |
|
| 78 |
<taxonlabel> |
|
| 79 |
<rank>subspecies</rank> |
|
| 80 |
<parent_id> |
|
| 81 |
<taxonlabel> |
|
| 82 |
<rank>species</rank> |
|
| 83 |
<parent_id> |
|
| 84 |
<taxonlabel> |
|
| 85 |
<rank>genus</rank> |
|
| 86 |
<taxonepithet>$genus</taxonepithet> |
|
| 87 |
<parent_id> |
|
| 88 |
<taxonlabel> |
|
| 89 |
<rank>family</rank> |
|
| 90 |
<taxonepithet>$family</taxonepithet> |
|
| 91 |
</taxonlabel> |
|
| 92 |
</parent_id> |
|
| 93 |
</taxonlabel> |
|
| 94 |
</parent_id> |
|
| 95 |
</taxonlabel> |
|
| 96 |
</parent_id> |
|
| 97 |
</taxonlabel> |
|
| 98 |
</parent_id> |
|
| 99 |
</taxonlabel> |
|
| 100 |
</parent_id> |
|
| 101 |
</taxonlabel> |
|
| 102 |
</parent_id> |
|
| 103 |
</taxonlabel> |
|
| 104 |
</parent_id> |
|
| 105 |
</taxonlabel> |
|
| 106 |
</parent_id> |
|
| 107 |
<taxonomicname> |
|
| 108 |
<_merge_prefix> |
|
| 109 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 110 |
<value><_filter_genus><value>$genus</value></_filter_genus></value> |
|
| 111 |
</_merge_prefix> |
|
| 112 |
</taxonomicname> |
|
| 113 |
</taxonlabel> |
|
| 114 |
</taxonlabel_id> |
|
| 115 |
<family>$family</family> |
|
| 116 |
<genus>$genus</genus> |
|
| 117 |
</taxonverbatim> |
|
| 118 |
</taxonverbatim_id> |
|
| 119 |
</taxondetermination> |
|
| 120 |
</taxonoccurrence> |
|
| 121 |
</locationevent> |
|
| 120 | 122 |
</locationevent> |
| 121 | 123 |
<locationnarrative>$locality</locationnarrative> |
| 122 | 124 |
<locationplace><place_id><place><continent>$continent</continent></place></place_id></locationplace> |
| inputs/test_taxonomic_names/Taxon/test.xml.ref | ||
|---|---|---|
| 8 | 8 |
<path> |
| 9 | 9 |
<location> |
| 10 | 10 |
<locationevent> |
| 11 |
<taxonoccurrence> |
|
| 12 |
<taxondetermination> |
|
| 13 |
<taxonverbatim_id> |
|
| 14 |
<taxonverbatim> |
|
| 15 |
<taxonlabel_id> |
|
| 16 |
<taxonlabel> |
|
| 17 |
<sourceaccessioncode>$scientificNameID</sourceaccessioncode> |
|
| 18 |
<taxonomicname>$taxonName</taxonomicname> |
|
| 19 |
</taxonlabel> |
|
| 20 |
</taxonlabel_id> |
|
| 21 |
<taxonname>$taxonName</taxonname> |
|
| 22 |
</taxonverbatim> |
|
| 23 |
</taxonverbatim_id> |
|
| 24 |
</taxondetermination> |
|
| 25 |
</taxonoccurrence> |
|
| 11 |
<locationevent fkey="parent_id"> |
|
| 12 |
<taxonoccurrence> |
|
| 13 |
<taxondetermination> |
|
| 14 |
<taxonverbatim_id> |
|
| 15 |
<taxonverbatim> |
|
| 16 |
<taxonlabel_id> |
|
| 17 |
<taxonlabel> |
|
| 18 |
<sourceaccessioncode>$scientificNameID</sourceaccessioncode> |
|
| 19 |
<taxonomicname>$taxonName</taxonomicname> |
|
| 20 |
</taxonlabel> |
|
| 21 |
</taxonlabel_id> |
|
| 22 |
<taxonname>$taxonName</taxonname> |
|
| 23 |
</taxonverbatim> |
|
| 24 |
</taxonverbatim_id> |
|
| 25 |
</taxondetermination> |
|
| 26 |
</taxonoccurrence> |
|
| 27 |
</locationevent> |
|
| 26 | 28 |
</locationevent> |
| 27 | 29 |
</location> |
| 28 | 30 |
</path> |
| inputs/NCU/Specimen/test.xml.ref | ||
|---|---|---|
| 21 | 21 |
</authorlocationcode> |
| 22 | 22 |
<iscultivated><_locationnarrative_is_cultivated><locationnarrative>$verbatimLocality</locationnarrative></_locationnarrative_is_cultivated></iscultivated> |
| 23 | 23 |
<locationevent> |
| 24 |
<taxonoccurrence> |
|
| 25 |
<aggregateoccurrence> |
|
| 26 |
<collectiondate>$dateCollected</collectiondate> |
|
| 27 |
<notes>$occurrenceRemarks</notes> |
|
| 28 |
<plantobservation> |
|
| 29 |
<authorplantcode>$collectorNumber</authorplantcode> |
|
| 30 |
<specimenreplicate> |
|
| 31 |
<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
|
| 32 |
<collectioncode_dwc>$collectionURL</collectioncode_dwc> |
|
| 33 |
<collectionnumber>$collectorNumber</collectionnumber> |
|
| 34 |
<institution_id> |
|
| 35 |
<sourcelist> |
|
| 36 |
<name>$specimenHolderInstitutions</name> |
|
| 37 |
<sourcename> |
|
| 38 |
<name> |
|
| 39 |
<_split> |
|
| 40 |
<separator>[,;] *</separator> |
|
| 41 |
<value>$specimenHolderInstitutions</value> |
|
| 42 |
</_split> |
|
| 43 |
</name> |
|
| 44 |
</sourcename> |
|
| 45 |
</sourcelist> |
|
| 46 |
</institution_id> |
|
| 47 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 48 |
</specimenreplicate> |
|
| 49 |
</plantobservation> |
|
| 50 |
</aggregateoccurrence> |
|
| 51 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 52 |
<iscultivated>$cultivated</iscultivated> |
|
| 53 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 54 |
<taxondetermination> |
|
| 55 |
<taxonverbatim_id> |
|
| 56 |
<taxonverbatim> |
|
| 57 |
<taxonlabel_id> |
|
| 58 |
<taxonlabel> |
|
| 59 |
<taxonomicname> |
|
| 60 |
<_alt> |
|
| 61 |
<1>$scientificName</1> |
|
| 62 |
<2>$taxonName</2> |
|
| 63 |
</_alt> |
|
| 64 |
</taxonomicname> |
|
| 65 |
</taxonlabel> |
|
| 66 |
</taxonlabel_id> |
|
| 67 |
<taxonname>$taxonName</taxonname> |
|
| 68 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 69 |
</taxonverbatim> |
|
| 70 |
</taxonverbatim_id> |
|
| 71 |
</taxondetermination> |
|
| 72 |
<taxondetermination> |
|
| 73 |
<isoriginal>true</isoriginal> |
|
| 74 |
<taxonverbatim_id><taxonverbatim><taxonomicname>$originalScientificName</taxonomicname></taxonverbatim></taxonverbatim_id> |
|
| 75 |
</taxondetermination> |
|
| 76 |
</taxonoccurrence> |
|
| 24 |
<locationevent fkey="parent_id"> |
|
| 25 |
<taxonoccurrence> |
|
| 26 |
<aggregateoccurrence> |
|
| 27 |
<collectiondate>$dateCollected</collectiondate> |
|
| 28 |
<notes>$occurrenceRemarks</notes> |
|
| 29 |
<plantobservation> |
|
| 30 |
<authorplantcode>$collectorNumber</authorplantcode> |
|
| 31 |
<specimenreplicate> |
|
| 32 |
<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
|
| 33 |
<collectioncode_dwc>$collectionURL</collectioncode_dwc> |
|
| 34 |
<collectionnumber>$collectorNumber</collectionnumber> |
|
| 35 |
<institution_id> |
|
| 36 |
<sourcelist> |
|
| 37 |
<name>$specimenHolderInstitutions</name> |
|
| 38 |
<sourcename> |
|
| 39 |
<name> |
|
| 40 |
<_split> |
|
| 41 |
<separator>[,;] *</separator> |
|
| 42 |
<value>$specimenHolderInstitutions</value> |
|
| 43 |
</_split> |
|
| 44 |
</name> |
|
| 45 |
</sourcename> |
|
| 46 |
</sourcelist> |
|
| 47 |
</institution_id> |
|
| 48 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 49 |
</specimenreplicate> |
|
| 50 |
</plantobservation> |
|
| 51 |
</aggregateoccurrence> |
|
| 52 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 53 |
<iscultivated>$cultivated</iscultivated> |
|
| 54 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 55 |
<taxondetermination> |
|
| 56 |
<taxonverbatim_id> |
|
| 57 |
<taxonverbatim> |
|
| 58 |
<taxonlabel_id> |
|
| 59 |
<taxonlabel> |
|
| 60 |
<taxonomicname> |
|
| 61 |
<_alt> |
|
| 62 |
<1>$scientificName</1> |
|
| 63 |
<2>$taxonName</2> |
|
| 64 |
</_alt> |
|
| 65 |
</taxonomicname> |
|
| 66 |
</taxonlabel> |
|
| 67 |
</taxonlabel_id> |
|
| 68 |
<taxonname>$taxonName</taxonname> |
|
| 69 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 70 |
</taxonverbatim> |
|
| 71 |
</taxonverbatim_id> |
|
| 72 |
</taxondetermination> |
|
| 73 |
<taxondetermination> |
|
| 74 |
<isoriginal>true</isoriginal> |
|
| 75 |
<taxonverbatim_id><taxonverbatim><taxonomicname>$originalScientificName</taxonomicname></taxonverbatim></taxonverbatim_id> |
|
| 76 |
</taxondetermination> |
|
| 77 |
</taxonoccurrence> |
|
| 78 |
</locationevent> |
|
| 77 | 79 |
</locationevent> |
| 78 | 80 |
<locationnarrative>$verbatimLocality</locationnarrative> |
| 79 | 81 |
<locationplace> |
| inputs/bien2_traits/TraitObservation/test.xml.ref | ||
|---|---|---|
| 18 | 18 |
<iscultivated><_locationnarrative_is_cultivated><locationnarrative>$verbatimLocality</locationnarrative></_locationnarrative_is_cultivated></iscultivated> |
| 19 | 19 |
<locationevent> |
| 20 | 20 |
<method_id><method><name>$samplingProtocol</name></method></method_id> |
| 21 |
<taxonoccurrence> |
|
| 22 |
<aggregateoccurrence><plantobservation><specimenreplicate><sourceaccessioncode>$occurrenceID</sourceaccessioncode></specimenreplicate></plantobservation></aggregateoccurrence> |
|
| 23 |
<growthform>$growthForm</growthform> |
|
| 24 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 25 |
<taxondetermination> |
|
| 26 |
<taxonverbatim_id> |
|
| 27 |
<taxonverbatim> |
|
| 28 |
<taxonlabel_id> |
|
| 29 |
<taxonlabel> |
|
| 30 |
<parent_id> |
|
| 31 |
<taxonlabel> |
|
| 32 |
<rank>$taxonRank</rank> |
|
| 33 |
<parent_id> |
|
| 34 |
<taxonlabel> |
|
| 35 |
<rank>cultivar</rank> |
|
| 36 |
<parent_id> |
|
| 37 |
<taxonlabel> |
|
| 38 |
<rank>forma</rank> |
|
| 39 |
<parent_id> |
|
| 40 |
<taxonlabel> |
|
| 41 |
<rank>variety</rank> |
|
| 42 |
<parent_id> |
|
| 43 |
<taxonlabel> |
|
| 44 |
<rank>subspecies</rank> |
|
| 45 |
<parent_id> |
|
| 46 |
<taxonlabel> |
|
| 47 |
<rank>species</rank> |
|
| 48 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 49 |
<parent_id> |
|
| 50 |
<taxonlabel> |
|
| 51 |
<rank>genus</rank> |
|
| 52 |
<taxonepithet>$genus</taxonepithet> |
|
| 53 |
<parent_id> |
|
| 54 |
<taxonlabel> |
|
| 55 |
<rank>family</rank> |
|
| 56 |
<taxonepithet>$family</taxonepithet> |
|
| 57 |
</taxonlabel> |
|
| 58 |
</parent_id> |
|
| 59 |
</taxonlabel> |
|
| 60 |
</parent_id> |
|
| 61 |
</taxonlabel> |
|
| 62 |
</parent_id> |
|
| 63 |
</taxonlabel> |
|
| 64 |
</parent_id> |
|
| 65 |
</taxonlabel> |
|
| 66 |
</parent_id> |
|
| 67 |
</taxonlabel> |
|
| 68 |
</parent_id> |
|
| 69 |
</taxonlabel> |
|
| 70 |
</parent_id> |
|
| 71 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
| 72 |
</taxonlabel> |
|
| 73 |
</parent_id> |
|
| 74 |
<rank>$taxonRank</rank> |
|
| 75 |
<taxonomicname> |
|
| 76 |
<_merge_prefix> |
|
| 77 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 78 |
<value> |
|
| 79 |
<_join_words> |
|
| 80 |
<1> |
|
| 81 |
<_alt> |
|
| 82 |
<1>$taxonName</1> |
|
| 83 |
<2> |
|
| 84 |
<_join_words> |
|
| 85 |
<2><_filter_genus><value>$genus</value></_filter_genus></2> |
|
| 86 |
<3>$specificEpithet</3> |
|
| 87 |
<5> |
|
| 88 |
<_join_words> |
|
| 89 |
<1> |
|
| 90 |
<_if name="if has infraspecificEpithet"> |
|
| 91 |
<cond>$infraspecificEpithet</cond> |
|
| 92 |
<then>$taxonRank</then> |
|
| 93 |
</_if> |
|
| 94 |
</1> |
|
| 95 |
<2>$infraspecificEpithet</2> |
|
| 96 |
</_join_words> |
|
| 97 |
</5> |
|
| 98 |
</_join_words> |
|
| 99 |
</2> |
|
| 100 |
</_alt> |
|
| 101 |
</1> |
|
| 102 |
<2>$scientificNameAuthorship</2> |
|
| 103 |
</_join_words> |
|
| 104 |
</value> |
|
| 105 |
</_merge_prefix> |
|
| 106 |
</taxonomicname> |
|
| 107 |
</taxonlabel> |
|
| 108 |
</taxonlabel_id> |
|
| 109 |
<author>$scientificNameAuthorship</author> |
|
| 110 |
<family>$family</family> |
|
| 111 |
<genus>$genus</genus> |
|
| 112 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 113 |
<taxonname>$taxonName</taxonname> |
|
| 114 |
<verbatimrank>$taxonRank</verbatimrank> |
|
| 115 |
</taxonverbatim> |
|
| 116 |
</taxonverbatim_id> |
|
| 117 |
</taxondetermination> |
|
| 118 |
<trait> |
|
| 119 |
<name>$measurementName</name> |
|
| 120 |
<units>$measurementUnit</units> |
|
| 121 |
<value>$measurementValue</value> |
|
| 122 |
</trait> |
|
| 123 |
</taxonoccurrence> |
|
| 21 |
<locationevent fkey="parent_id"> |
|
| 22 |
<taxonoccurrence> |
|
| 23 |
<aggregateoccurrence><plantobservation><specimenreplicate><sourceaccessioncode>$occurrenceID</sourceaccessioncode></specimenreplicate></plantobservation></aggregateoccurrence> |
|
| 24 |
<growthform>$growthForm</growthform> |
|
| 25 |
<sourceaccessioncode>$occurrenceID</sourceaccessioncode> |
|
| 26 |
<taxondetermination> |
|
| 27 |
<taxonverbatim_id> |
|
| 28 |
<taxonverbatim> |
|
| 29 |
<taxonlabel_id> |
|
| 30 |
<taxonlabel> |
|
| 31 |
<parent_id> |
|
| 32 |
<taxonlabel> |
|
| 33 |
<rank>$taxonRank</rank> |
|
| 34 |
<parent_id> |
|
| 35 |
<taxonlabel> |
|
| 36 |
<rank>cultivar</rank> |
|
| 37 |
<parent_id> |
|
| 38 |
<taxonlabel> |
|
| 39 |
<rank>forma</rank> |
|
| 40 |
<parent_id> |
|
| 41 |
<taxonlabel> |
|
| 42 |
<rank>variety</rank> |
|
| 43 |
<parent_id> |
|
| 44 |
<taxonlabel> |
|
| 45 |
<rank>subspecies</rank> |
|
| 46 |
<parent_id> |
|
| 47 |
<taxonlabel> |
|
| 48 |
<rank>species</rank> |
|
| 49 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 50 |
<parent_id> |
|
| 51 |
<taxonlabel> |
|
| 52 |
<rank>genus</rank> |
|
| 53 |
<taxonepithet>$genus</taxonepithet> |
|
| 54 |
<parent_id> |
|
| 55 |
<taxonlabel> |
|
| 56 |
<rank>family</rank> |
|
| 57 |
<taxonepithet>$family</taxonepithet> |
|
| 58 |
</taxonlabel> |
|
| 59 |
</parent_id> |
|
| 60 |
</taxonlabel> |
|
| 61 |
</parent_id> |
|
| 62 |
</taxonlabel> |
|
| 63 |
</parent_id> |
|
| 64 |
</taxonlabel> |
|
| 65 |
</parent_id> |
|
| 66 |
</taxonlabel> |
|
| 67 |
</parent_id> |
|
| 68 |
</taxonlabel> |
|
| 69 |
</parent_id> |
|
| 70 |
</taxonlabel> |
|
| 71 |
</parent_id> |
|
| 72 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
| 73 |
</taxonlabel> |
|
| 74 |
</parent_id> |
|
| 75 |
<rank>$taxonRank</rank> |
|
| 76 |
<taxonomicname> |
|
| 77 |
<_merge_prefix> |
|
| 78 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 79 |
<value> |
|
| 80 |
<_join_words> |
|
| 81 |
<1> |
|
| 82 |
<_alt> |
|
| 83 |
<1>$taxonName</1> |
|
| 84 |
<2> |
|
| 85 |
<_join_words> |
|
| 86 |
<2><_filter_genus><value>$genus</value></_filter_genus></2> |
|
| 87 |
<3>$specificEpithet</3> |
|
| 88 |
<5> |
|
| 89 |
<_join_words> |
|
| 90 |
<1> |
|
| 91 |
<_if name="if has infraspecificEpithet"> |
|
| 92 |
<cond>$infraspecificEpithet</cond> |
|
| 93 |
<then>$taxonRank</then> |
|
| 94 |
</_if> |
|
| 95 |
</1> |
|
| 96 |
<2>$infraspecificEpithet</2> |
|
| 97 |
</_join_words> |
|
| 98 |
</5> |
|
| 99 |
</_join_words> |
|
| 100 |
</2> |
|
| 101 |
</_alt> |
|
| 102 |
</1> |
|
| 103 |
<2>$scientificNameAuthorship</2> |
|
| 104 |
</_join_words> |
|
| 105 |
</value> |
|
| 106 |
</_merge_prefix> |
|
| 107 |
</taxonomicname> |
|
| 108 |
</taxonlabel> |
|
| 109 |
</taxonlabel_id> |
|
| 110 |
<author>$scientificNameAuthorship</author> |
|
| 111 |
<family>$family</family> |
|
| 112 |
<genus>$genus</genus> |
|
| 113 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 114 |
<taxonname>$taxonName</taxonname> |
|
| 115 |
<verbatimrank>$taxonRank</verbatimrank> |
|
| 116 |
</taxonverbatim> |
|
| 117 |
</taxonverbatim_id> |
|
| 118 |
</taxondetermination> |
|
| 119 |
<trait> |
|
| 120 |
<name>$measurementName</name> |
|
| 121 |
<units>$measurementUnit</units> |
|
| 122 |
<value>$measurementValue</value> |
|
| 123 |
</trait> |
|
| 124 |
</taxonoccurrence> |
|
| 125 |
</locationevent> |
|
| 124 | 126 |
</locationevent> |
| 125 | 127 |
<locationnarrative>$verbatimLocality</locationnarrative> |
| 126 | 128 |
<locationplace> |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
Subplot Number,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
| 14 | 14 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
| 15 | 15 |
Observation Date,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
| 16 |
Observation Date,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
|
| 17 |
Id,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode/_first/1, |
|
| 18 |
Diameter at 1.3m,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
|
|
| 19 |
Tree Number,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
|
| 20 |
1ha Plot X Coordinate,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
|
|
| 21 |
1ha Plot Y Coordinate,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
|
|
| 22 |
1ha Plot Number,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
| 23 |
Id,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/cond/_exists", |
|
| 24 |
Tree Number,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2", |
|
| 25 |
Names of Collectors,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/collector_id/party/fullname, |
|
| 26 |
Id,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 27 |
Id,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else/_first/1", |
|
| 28 |
Species,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 29 |
Genus,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 30 |
Family,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 31 |
Family,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
|
| 32 |
Genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value, |
|
| 33 |
Species,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 34 |
Family,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 35 |
Genus,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 36 |
Species,/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
|
| 16 | 37 |
Observation Date,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
| 17 | 38 |
Observation Date,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
| 18 |
Observation Date,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
|
| 19 |
Id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode/_first/1, |
|
| 20 |
Diameter at 1.3m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
|
|
| 21 |
Tree Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
|
| 22 |
1ha Plot X Coordinate,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
|
|
| 23 |
1ha Plot Y Coordinate,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
|
|
| 24 |
1ha Plot Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
| 25 |
Id,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/cond/_exists", |
|
| 26 |
Tree Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2", |
|
| 27 |
Names of Collectors,/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
|
| 28 |
Id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 29 |
Id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else/_first/1", |
|
| 30 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 31 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 32 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 33 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
|
| 34 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2/_filter_genus/value, |
|
| 35 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 36 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 37 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 38 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
|
| 39 | 39 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
| 40 | 40 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
| 41 | 41 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 28 | 28 |
<obsstartdate><_dateRangeStart><value>$Observation Date</value></_dateRangeStart></obsstartdate> |
| 29 | 29 |
</locationevent> |
| 30 | 30 |
</parent_id> |
| 31 |
<locationevent fkey="parent_id"> |
|
| 32 |
<taxonoccurrence> |
|
| 33 |
<aggregateoccurrence> |
|
| 34 |
<collectiondate>$Observation Date</collectiondate> |
|
| 35 |
<plantobservation> |
|
| 36 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
|
| 37 |
<stemobservation> |
|
| 38 |
<diameterbreastheight_m><_cm_to_m><value>$Diameter at 1.3m</value></_cm_to_m></diameterbreastheight_m> |
|
| 39 |
<tag>$Tree Number</tag> |
|
| 40 |
<xposition_m>$1ha Plot X Coordinate</xposition_m> |
|
| 41 |
<yposition_m>$1ha Plot Y Coordinate</yposition_m> |
|
| 42 |
</stemobservation> |
|
| 43 |
</plantobservation> |
|
| 44 |
</aggregateoccurrence> |
|
| 45 |
<authortaxoncode>$Tree Number</authortaxoncode> |
|
| 46 |
<collector_id><party><fullname>$Names of Collectors</fullname></party></collector_id> |
|
Also available in: Unified diff
bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.