Revision 11107
Added by Aaron Marcuse-Kubitza over 11 years ago
| test.xml.ref | ||
|---|---|---|
| 31 | 31 |
</_locationnarrative_is_cultivated> |
| 32 | 32 |
</iscultivated> |
| 33 | 33 |
<locationevent> |
| 34 |
<taxonoccurrence> |
|
| 35 |
<aggregateoccurrence> |
|
| 36 |
<collectiondate>$dateCollected</collectiondate> |
|
| 37 |
<notes>$occurrenceRemarks</notes> |
|
| 38 |
<plantobservation> |
|
| 39 |
<authorplantcode>$collectorNumber</authorplantcode> |
|
| 40 |
<reproductivecondition>$reproductiveCondition</reproductivecondition> |
|
| 41 |
<specimenreplicate> |
|
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<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
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<collectioncode_dwc>$collection</collectioncode_dwc> |
|
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<collectionnumber>$collectorNumber</collectionnumber> |
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| 45 |
</specimenreplicate> |
|
| 46 |
</plantobservation> |
|
| 47 |
</aggregateoccurrence> |
|
| 48 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
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<iscultivated> |
|
| 50 |
<_map> |
|
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<cultivated>t</cultivated> |
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<wild>f</wild> |
|
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<*></*> |
|
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<value>$establishmentMeans</value> |
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| 55 |
</_map> |
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</iscultivated> |
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<isnative> |
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<_map> |
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<native>t</native> |
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| 60 |
<exotic>f</exotic> |
|
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<*></*> |
|
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<value>$establishmentMeans</value> |
|
| 63 |
</_map> |
|
| 64 |
</isnative> |
|
| 65 |
<taxondetermination> |
|
| 66 |
<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
|
| 67 |
<taxonverbatim_id> |
|
| 68 |
<taxonverbatim> |
|
| 69 |
<taxonlabel_id> |
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| 70 |
<taxonlabel> |
|
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<parent_id> |
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| 72 |
<taxonlabel> |
|
| 73 |
<parent_id> |
|
| 74 |
<taxonlabel> |
|
| 75 |
<rank>cultivar</rank> |
|
| 76 |
<parent_id> |
|
| 77 |
<taxonlabel> |
|
| 78 |
<rank>forma</rank> |
|
| 79 |
<parent_id> |
|
| 80 |
<taxonlabel> |
|
| 81 |
<rank>variety</rank> |
|
| 82 |
<parent_id> |
|
| 83 |
<taxonlabel> |
|
| 84 |
<rank>subspecies</rank> |
|
| 85 |
<parent_id> |
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| 86 |
<taxonlabel> |
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| 87 |
<rank>species</rank> |
|
| 88 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 89 |
<parent_id> |
|
| 90 |
<taxonlabel> |
|
| 91 |
<rank>genus</rank> |
|
| 92 |
<taxonepithet>$genus</taxonepithet> |
|
| 93 |
<parent_id> |
|
| 94 |
<taxonlabel> |
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| 95 |
<rank>family</rank> |
|
| 96 |
<taxonepithet>$family</taxonepithet> |
|
| 97 |
</taxonlabel> |
|
| 98 |
</parent_id> |
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| 99 |
</taxonlabel> |
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| 100 |
</parent_id> |
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| 101 |
</taxonlabel> |
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| 102 |
</parent_id> |
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| 103 |
</taxonlabel> |
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| 104 |
</parent_id> |
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| 105 |
</taxonlabel> |
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| 106 |
</parent_id> |
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</taxonlabel> |
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| 108 |
</parent_id> |
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| 109 |
</taxonlabel> |
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| 110 |
</parent_id> |
|
| 111 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
| 112 |
</taxonlabel> |
|
| 113 |
</parent_id> |
|
| 114 |
<taxonomicname> |
|
| 115 |
<_merge_prefix> |
|
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<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 117 |
<value> |
|
| 118 |
<_join_words> |
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| 119 |
<1> |
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<_join_words> |
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<2><_filter_genus><value>$genus</value></_filter_genus></2> |
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| 122 |
<3>$specificEpithet</3> |
|
| 123 |
<5>$infraspecificEpithet</5> |
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| 124 |
</_join_words> |
|
| 125 |
</1> |
|
| 126 |
<2>$scientificNameAuthorship</2> |
|
| 127 |
</_join_words> |
|
| 128 |
</value> |
|
| 129 |
</_merge_prefix> |
|
| 130 |
</taxonomicname> |
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| 131 |
</taxonlabel> |
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| 132 |
</taxonlabel_id> |
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<author>$scientificNameAuthorship</author> |
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| 134 |
<family>$family</family> |
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<genus>$genus</genus> |
|
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<specific_epithet>$specificEpithet</specific_epithet> |
|
| 137 |
</taxonverbatim> |
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| 138 |
</taxonverbatim_id> |
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| 139 |
</taxondetermination> |
|
| 140 |
</taxonoccurrence> |
|
| 34 |
<locationevent fkey="parent_id"> |
|
| 35 |
<taxonoccurrence> |
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| 36 |
<aggregateoccurrence> |
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<collectiondate>$dateCollected</collectiondate> |
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| 38 |
<notes>$occurrenceRemarks</notes> |
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| 39 |
<plantobservation> |
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<authorplantcode>$collectorNumber</authorplantcode> |
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<reproductivecondition>$reproductiveCondition</reproductivecondition> |
|
| 42 |
<specimenreplicate> |
|
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<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
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<collectioncode_dwc>$collection</collectioncode_dwc> |
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<collectionnumber>$collectorNumber</collectionnumber> |
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</specimenreplicate> |
|
| 47 |
</plantobservation> |
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| 48 |
</aggregateoccurrence> |
|
| 49 |
<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
|
| 50 |
<iscultivated> |
|
| 51 |
<_map> |
|
| 52 |
<cultivated>t</cultivated> |
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<wild>f</wild> |
|
| 54 |
<*></*> |
|
| 55 |
<value>$establishmentMeans</value> |
|
| 56 |
</_map> |
|
| 57 |
</iscultivated> |
|
| 58 |
<isnative> |
|
| 59 |
<_map> |
|
| 60 |
<native>t</native> |
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| 61 |
<exotic>f</exotic> |
|
| 62 |
<*></*> |
|
| 63 |
<value>$establishmentMeans</value> |
|
| 64 |
</_map> |
|
| 65 |
</isnative> |
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<taxondetermination> |
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<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
|
| 68 |
<taxonverbatim_id> |
|
| 69 |
<taxonverbatim> |
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<taxonlabel_id> |
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| 71 |
<taxonlabel> |
|
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<parent_id> |
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<taxonlabel> |
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<parent_id> |
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| 75 |
<taxonlabel> |
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| 76 |
<rank>cultivar</rank> |
|
| 77 |
<parent_id> |
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| 78 |
<taxonlabel> |
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| 79 |
<rank>forma</rank> |
|
| 80 |
<parent_id> |
|
| 81 |
<taxonlabel> |
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| 82 |
<rank>variety</rank> |
|
| 83 |
<parent_id> |
|
| 84 |
<taxonlabel> |
|
| 85 |
<rank>subspecies</rank> |
|
| 86 |
<parent_id> |
|
| 87 |
<taxonlabel> |
|
| 88 |
<rank>species</rank> |
|
| 89 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 90 |
<parent_id> |
|
| 91 |
<taxonlabel> |
|
| 92 |
<rank>genus</rank> |
|
| 93 |
<taxonepithet>$genus</taxonepithet> |
|
| 94 |
<parent_id> |
|
| 95 |
<taxonlabel> |
|
| 96 |
<rank>family</rank> |
|
| 97 |
<taxonepithet>$family</taxonepithet> |
|
| 98 |
</taxonlabel> |
|
| 99 |
</parent_id> |
|
| 100 |
</taxonlabel> |
|
| 101 |
</parent_id> |
|
| 102 |
</taxonlabel> |
|
| 103 |
</parent_id> |
|
| 104 |
</taxonlabel> |
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| 105 |
</parent_id> |
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| 106 |
</taxonlabel> |
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| 107 |
</parent_id> |
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| 108 |
</taxonlabel> |
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| 109 |
</parent_id> |
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| 110 |
</taxonlabel> |
|
| 111 |
</parent_id> |
|
| 112 |
<taxonepithet>$infraspecificEpithet</taxonepithet> |
|
| 113 |
</taxonlabel> |
|
| 114 |
</parent_id> |
|
| 115 |
<taxonomicname> |
|
| 116 |
<_merge_prefix> |
|
| 117 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 118 |
<value> |
|
| 119 |
<_join_words> |
|
| 120 |
<1> |
|
| 121 |
<_join_words> |
|
| 122 |
<2><_filter_genus><value>$genus</value></_filter_genus></2> |
|
| 123 |
<3>$specificEpithet</3> |
|
| 124 |
<5>$infraspecificEpithet</5> |
|
| 125 |
</_join_words> |
|
| 126 |
</1> |
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| 127 |
<2>$scientificNameAuthorship</2> |
|
| 128 |
</_join_words> |
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</value> |
|
| 130 |
</_merge_prefix> |
|
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</taxonomicname> |
|
| 132 |
</taxonlabel> |
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| 133 |
</taxonlabel_id> |
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<author>$scientificNameAuthorship</author> |
|
| 135 |
<family>$family</family> |
|
| 136 |
<genus>$genus</genus> |
|
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<specific_epithet>$specificEpithet</specific_epithet> |
|
| 138 |
</taxonverbatim> |
|
| 139 |
</taxonverbatim_id> |
|
| 140 |
</taxondetermination> |
|
| 141 |
</taxonoccurrence> |
|
| 142 |
</locationevent> |
|
| 141 | 143 |
</locationevent> |
| 142 | 144 |
<locationnarrative> |
| 143 | 145 |
<_merge> |
Also available in: Unified diff
bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.