Project

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Profile

1
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63
3
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65
4
county,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=county])/placename,,66
5
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy,,89
6
coordinatePrecision/_noCV/value,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
7
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
8
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_alt/1,,68
9
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
10
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
11
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
12
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
13
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
14
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
15
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
16
habitat,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
17
habitat/_merge/1,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/1,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
18
habitat/_merge/2,/*_id/taxonoccurrence/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_merge/2,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
19
bien.substrate,/*_id/taxonoccurrence/*_id/locationevent/landscapenarrative,,
20
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
21
eventDate/_alt/1/_*/date,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/1/_*/date,,44
22
eventDate/_alt/2/_date/day,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/day,,44
23
eventDate/_alt/2/_date/month,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/month,,44
24
eventDate/_alt/2/_date/year,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year,,44
25
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
26
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
27
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
28
sex,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
29
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate",,120
30
dateIdentified/_alt/1/_*/date,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/1/_*/date",,120
31
dateIdentified/_alt/2/_date/day,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/2/_date/day",,120
32
dateIdentified/_alt/2/_date/month,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/2/_date/month",,120
33
dateIdentified/_alt/2/_date/year,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/2/_date/year",,120
34
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
35
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
36
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
37
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
38
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
39
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
40
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
41
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
42
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
43
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
44
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23
45
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
46
fieldNotes,/description,,
47
fieldNotes/_merge/1,/description/_merge/1,,
48
"fieldNotes/_merge/2/_label[label=""plant fungus""]/value","/description/_merge/2/_label[label=""plant fungus""]/value",,
49
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
50
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
51
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
52
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
53
institutionCode,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,
54
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
55
acceptedNameUsage,,,135
56
acceptedNameUsageID,,,128
57
associatedMedia,,,36
58
associatedOccurrences,,,38
59
associatedReferences,,,37
60
associatedSequences,,,39
61
associatedTaxa,,,40
62
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
63
bed,,,117
64
behavior,,,29
65
continent,,Brad: OMIT,59
66
coordinateUncertaintyInMeters,,,88
67
countryCode,,,64
68
dataGeneralizations,,,17
69
datasetID,,,10
70
datasetName,,,13
71
day,,Brad: OMIT,50
72
dcterms:accessRights,,,5
73
dcterms:bibliographicCitation,,,6
74
dcterms:language,,,2
75
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
76
dcterms:references,,,7
77
dcterms:rights,,,3
78
dcterms:rightsHolder,,,4
79
dcterms:type,,,0
80
disposition,,,33
81
dynamicProperties,,,18
82
earliestAgeOrLowestStage,,,109
83
earliestEonOrLowestEonothem,,,101
84
earliestEpochOrLowestSeries,,,107
85
earliestEraOrLowestErathem,,,103
86
earliestPeriodOrLowestSystem,,,105
87
endDayOfYear,,,47
88
establishmentMeans,,,30
89
eventID,,,41
90
eventRemarks,,,55
91
eventTime,,Brad: OMIT,45
92
footprintSRS,,,92
93
footprintSpatialFit,,,93
94
formation,,,115
95
geodeticDatum,,,87
96
geologicalContextID,,,100
97
georeferenceProtocol,,,96
98
georeferenceRemarks,,,99
99
georeferenceSources,,,97
100
georeferenceVerificationStatus,,,98
101
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
102
georeferencedDate,,,95
103
group,,,114
104
higherClassification,,,141
105
higherGeography,,,58
106
higherGeographyID,,,57
107
highestBiostratigraphicZone,,,112
108
identificationID,,,118
109
identificationQualifier,,,124
110
identificationReferences,,,121
111
identificationRemarks,,,123
112
identificationVerificationStatus,,,122
113
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
114
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
115
informationWithheld,,,16
116
institutionID,,,8
117
island,,,62
118
islandGroup,,,61
119
latestAgeOrHighestStage,,,110
120
latestEonOrHighestEonothem,,,102
121
latestEpochOrHighestSeries,,,108
122
latestEraOrHighestErathem,,,104
123
latestPeriodOrHighestSystem,,,106
124
lifeStage,,,27
125
lithostratigraphicTerms,,,113
126
locationAccordingTo,,,78
127
locationID,,,56
128
locationRemarks,,,79
129
lowestBiostratigraphicZone,,,111
130
maximumDistanceAboveSurfaceInMeters,,,77
131
measurementAccuracy,,,169
132
measurementDeterminedBy,,,172
133
measurementDeterminedDate,,,171
134
measurementID,,,166
135
measurementMethod,,,173
136
measurementRemarks,,,174
137
measurementType,,,167
138
measurementUnit,,,170
139
measurementValue,,,168
140
member,,,116
141
minimumDistanceAboveSurfaceInMeters,,,76
142
month,,,49
143
municipality,,,67
144
nameAccordingTo,,,138
145
nameAccordingToID,,,131
146
namePublishedIn,,,139
147
namePublishedInID,,,132
148
namePublishedInYear,,,140
149
nomenclaturalCode,,,155
150
nomenclaturalStatus,,,157
151
occurrenceRemarks,,,21
152
occurrenceStatus,,,31
153
originalNameUsage,,,137
154
originalNameUsageID,,,130
155
otherCatalogNumbers,,,34
156
ownerInstitutionCode,,,14
157
parentNameUsage,,,136
158
parentNameUsageID,,,129
159
pointRadiusSpatialFit,,,90
160
preparations,,Brad: OMIT,32
161
previousIdentifications,,Brad: OMIT,35
162
relatedResourceID,,Brad: OMIT,161
163
relationshipAccordingTo,,,163
164
relationshipEstablishedDate,,,164
165
relationshipOfResource,,Brad: OMIT,162
166
relationshipRemarks,,,165
167
reproductiveCondition,,,28
168
resourceID,,,160
169
resourceRelationshipID,,,159
170
samplingEffort,,,43
171
samplingProtocol,,,42
172
scientificNameID,,,127
173
startDayOfYear,,,46
174
subgenus,,,148
175
taxonConceptID,,,133
176
taxonID,,,126
177
taxonRank,,,151
178
taxonRemarks,,,158
179
taxonomicStatus,,,156
180
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
181
verbatimCoordinateSystem,,,83
182
verbatimCoordinates,,,80
183
verbatimDepth,,,73
184
verbatimElevation,,,70
185
verbatimEventDate,,,51
186
verbatimSRS,,,84
187
verbatimTaxonRank,,,152
188
vernacularName,,,154
189
waterBody,,,60
190
year,,,48
(3-3/8)