"DwC1::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[InstitutionCode=$/_ignore/inLabel]/","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/","Comments"

"DateLastModified","dcterms:modified",

"InstitutionCode","institutionCode",

"CollectionCode","collectionCode",

"CatalogNumber","catalogNumber",

"ScientificName","scientificName",

"BasisOfRecord","basisOfRecord",

"Kingdom","kingdom",

"Phylum","phylum",

"Class","class",

"Order","order",

"Family","family",

"Genus","genus",

"Species","specificEpithet",

"Subspecies","infraspecificEpithet",

"ScientificNameAuthor","scientificNameAuthorship",

"IdentifiedBy","identifiedBy",

"YearIdentified","dateIdentified/_alt/2/_date/year",

"MonthIdentified","dateIdentified/_alt/2/_date/month",

"DayIdentified","dateIdentified/_alt/2/_date/day",

"TypeStatus","typeStatus",

"CollectorNumber","recordNumber",

"FieldNumber","fieldNumber",

"Collector","recordedBy",

"YearCollected","eventDate/_alt/2/_date/year",

"MonthCollected","eventDate/_alt/2/_date/month",

"DayCollected","eventDate/_alt/2/_date/day",

"JulianDay","day",

"TimeOfDay","eventTime",

"ContinentOcean","continent",

"Country","country",

"StateProvince","stateProvince",

"County","county",

"Locality","verbatimLocality",

"Longitude","verbatimLongitude",

"Latitude","verbatimLatitude",

"CoordinatePrecision","coordinatePrecision/_noCV/value",

"BoundingBox","footprintWKT",

"MinimumElevation","minimumElevationInMeters",

"MaximumElevation","maximumElevationInMeters",

"MinimumDepth","minimumDepthInMeters",

"MaximumDepth","maximumDepthInMeters",

"Sex","sex",

"PreparationType","preparations",

"IndividualCount","individualCount",

"PreviousCatalogNumber","previousIdentifications","?"

"RelationshipType","relationshipOfResource",

"RelatedCatalogItem","relatedResourceID",

"Notes","fieldNotes/_merge/1",

"DwC1::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[InstitutionCode=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order

Country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63

StateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65

County,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=county])/placename,,66

CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89

BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91

Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69

MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72

MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71

Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81

Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82

DayCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/day,,44

MonthCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/month,,44

YearCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year,,44

MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75

MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74

ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153

Sex,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26

DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/2/_date/day",,120

MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/2/_date/month",,120

YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_alt/2/_date/year",,120

IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119

ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134

Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144

Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146

Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147

Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142

Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145

Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149

Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143

Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150

Collector,/*_id/taxonoccurrence/verbatimcollectorname,,23

CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12

Notes,/description/_merge/1,,

CatalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20

CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22

FieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53

InstitutionCode,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,

BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15

ContinentOcean,,Brad: OMIT,59

DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1

IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25

JulianDay,,Brad: OMIT,50

PreparationType,,Brad: OMIT,32

PreviousCatalogNumber,,?; Brad: OMIT,35

RelatedCatalogItem,,Brad: OMIT,161

RelationshipType,,Brad: OMIT,162

TimeOfDay,,Brad: OMIT,45

TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125

review_ = $(bin)/review <$(1) >for_review/$(1)

review = $(call review_,$@)

all: _always $(coreMaps) join_maps ch_root_maps ;

	$(call review_,$<)

##### Maps generated with join

define join

$(bin)/join_sort <$+ >$@

$(review)

endef

joinMaps :=

DwC1-VegBIEN.specimens.csv: DwC1-DwC.specimens.csv DwC-VegBIEN.specimens.csv

	$(join)

joinMaps += DwC1-VegBIEN.specimens.csv

join_maps: $(joinMaps) ;

all += $(joinMaps)

$(review)