Revision 112
Added by Aaron Marcuse-Kubitza about 13 years ago
| scripts/test/accepted_output/SALVIAS.organisms.VegBank.xml | ||
|---|---|---|
| 34 | 34 |
<currentInterpretation>false</currentInterpretation> |
| 35 | 35 |
<interpretationDate>epoch</interpretationDate> |
| 36 | 36 |
<plantConcept_ID> |
| 37 |
<plantConcept/> |
|
| 37 |
<plantConcept> |
|
| 38 |
<reference_ID> |
|
| 39 |
<reference/> |
|
| 40 |
</reference_ID> |
|
| 41 |
<plantName_ID> |
|
| 42 |
<plantName> |
|
| 43 |
<plantName>Inga indet</plantName> |
|
| 44 |
</plantName> |
|
| 45 |
</plantName_ID> |
|
| 46 |
</plantConcept> |
|
| 38 | 47 |
</plantConcept_ID> |
| 39 | 48 |
<party_ID> |
| 40 | 49 |
<party/> |
| ... | ... | |
| 289 | 298 |
<currentInterpretation>false</currentInterpretation> |
| 290 | 299 |
<interpretationDate>epoch</interpretationDate> |
| 291 | 300 |
<plantConcept_ID> |
| 292 |
<plantConcept/> |
|
| 301 |
<plantConcept> |
|
| 302 |
<reference_ID> |
|
| 303 |
<reference/> |
|
| 304 |
</reference_ID> |
|
| 305 |
<plantName_ID> |
|
| 306 |
<plantName> |
|
| 307 |
<plantName>Virola pavonis</plantName> |
|
| 308 |
</plantName> |
|
| 309 |
</plantName_ID> |
|
| 310 |
</plantConcept> |
|
| 293 | 311 |
</plantConcept_ID> |
| 294 | 312 |
<party_ID> |
| 295 | 313 |
<party/> |
| mappings/VegX-VegBank.organisms.csv | ||
|---|---|---|
| 16 | 16 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Subkingdom]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
| 17 | 17 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Kingdom]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
| 18 | 18 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]/*_ID/plantConcept/*_ID/reference/referenceContributor/*_ID/referenceParty/{givenName,surname}"
|
| 19 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName"
|
|
| 19 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxonImportance/stemCount/stemLocation/{taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName,taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/*_ID/plantConcept/*_ID/*/plantName}"
|
|
| 20 | 20 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Subspecies]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
| 21 | 21 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxonImportance/stemCount/stemLocation/{taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,!*_ID/plantConcept/plantStatus]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[*_ID/reference]/*_ID/*/plantName,taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/*_ID/plantConcept:[*_ID/reference]/*_ID/*/plantName}"
|
| 22 | 22 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/day","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,!*_ID/plantConcept/plantStatus]/interpretationDate/_date/day" |
| ... | ... | |
| 28 | 28 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/notes" |
| 29 | 29 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/first","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/museum_ID/party/OrganizationName/_name/first" |
| 30 | 30 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/last","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/museum_ID/party/OrganizationName/_name/last" |
| 31 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher","/{taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept,*_ID/party]/museumAccessionNumber,*_ID/observation/*_ID/plot:[confidentialityStatus=0]/authorPlotCode}"
|
|
| 31 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher","/{taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept:[*_ID/reference],*_ID/party]/museumAccessionNumber,*_ID/observation/*_ID/plot:[confidentialityStatus=0]/authorPlotCode}"
|
|
| 32 | 32 |
"/*ID->/*s/individualOrganism/identificationLabel","/taxonImportance/stemCount/stemLocation/stemCode" |
| 33 | 33 |
"/*ID->/*s/individualOrganism/simpleUserdefined[name=sex]/value","/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/definedValue[*_ID/userDefined[tableName=taxonInterpretation,userDefinedName=sex]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue" |
| 34 | 34 |
"/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium","/*_ID/observation/soilObs/definedValue[*_ID/userDefined[tableName=soilObs,userDefinedName=soilMagnesium]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue" |
| mappings/NYBG-VegBank.organisms.csv | ||
|---|---|---|
| 9 | 9 |
Order,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Order]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
| 10 | 10 |
Family,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Family]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
| 11 | 11 |
Genus,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Genus]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
| 12 |
Species,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName"
|
|
| 12 |
Species,"/taxonImportance/stemCount/stemLocation/{taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName,taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/*_ID/plantConcept/*_ID/*/plantName}"
|
|
| 13 | 13 |
Subspecies,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Subspecies]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
| 14 | 14 |
ScientificNameAuthor,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]/*_ID/plantConcept/*_ID/reference/referenceContributor/*_ID/referenceParty/{givenName,surname}"
|
| 15 | 15 |
IdentifiedBy,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,!*_ID/plantConcept/plantStatus]:[interpretationType=Author,originalInterpretation=false,currentInterpretation=true]/*_ID/party/{givenName/_namePart/first,middleName/_namePart/middle,surName/_namePart/last}"
|
| ... | ... | |
| 39 | 39 |
PlantFungusDescription,"/taxonImportance/stemCount/stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=plantFungusDescription]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue" |
| 40 | 40 |
Substrate,"/taxonImportance/stemCount/stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=substrate]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue" |
| 41 | 41 |
Vegetation,"/taxonImportance/stemCount/stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=vegetation]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue" |
| 42 |
UniqueNYInternalRecordNumber,"/{taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept,*_ID/party]/museumAccessionNumber,*_ID/observation/*_ID/plot:[confidentialityStatus=0]/authorPlotCode}"
|
|
| 42 |
UniqueNYInternalRecordNumber,"/{taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept:[*_ID/reference],*_ID/party]/museumAccessionNumber,*_ID/observation/*_ID/plot:[confidentialityStatus=0]/authorPlotCode}"
|
|
| mappings/SALVIAS-VegBank.organisms.csv | ||
|---|---|---|
| 1 | 1 |
SALVIAS,VegBank:/taxonObservation |
| 2 |
OBSERVATION_ID,"/{taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept,*_ID/party]/museumAccessionNumber,*_ID/observation/*_ID/plot:[confidentialityStatus=0]/authorPlotCode}"
|
|
| 2 |
OBSERVATION_ID,"/{taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=false,interpretationDate=epoch,*_ID/plantConcept:[*_ID/reference],*_ID/party]/museumAccessionNumber,*_ID/observation/*_ID/plot:[confidentialityStatus=0]/authorPlotCode}"
|
|
| 3 | 3 |
plot_code,/*_ID/observation/*_ID/plot/PARENT_ID/plot:[confidentialityStatus=0]/authorPlotCode |
| 4 | 4 |
census_no,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/definedValue[*_ID/userDefined[tableName=taxonInterpretation,userDefinedName=censusNo]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue" |
| 5 | 5 |
census_date,/*_ID/observation/obsStartDate/_date/year |
| ... | ... | |
| 37 | 37 |
stem_liana_infestation,"/taxonImportance/stemCount/stemLocation/definedValue[*_ID/userDefined[tableName=stemLocation,userDefinedName=stemLianaInfestation]:[userDefinedType=varchar]]:[@fkey=tableRecord_ID]/definedValue" |
| 38 | 38 |
notes,/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/notes |
| 39 | 39 |
orig_family,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Family]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
| 40 |
orig_species,"/taxonImportance/stemCount/stemLocation/taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName" |
|
| 40 |
orig_species,"/taxonImportance/stemCount/stemLocation/{taxonInterpretation[ROLE_ID/aux_Role/roleCode=identifier,*_ID/plantConcept/plantStatus/plantLevel=Species]:[interpretationType=Author,originalInterpretation=true,currentInterpretation=true,interpretationDate=epoch,*_ID/party]/*_ID/plantConcept:[plantStatus:[plantConceptStatus=accepted,startDate=epoch,*_ID/party],*_ID/reference]/*_ID/*/plantName,taxonInterpretation[ROLE_ID/aux_Role/roleCode=collector]/*_ID/plantConcept/*_ID/*/plantName}"
|
|
Also available in: Unified diff
VegX-VegBank mapping: Added mapping from taxonName/Simple (NYBG ScientificName) to collector plantName so that collector plantName will always have a value