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root/mappings/for_review/DwC-VegBIEN.specimens.csv @ 1125

1 1108 aaronmk 
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2 1118 aaronmk 
Country,"//*_id/namedplace[placesystem=""area|country|territory""]/placename",Brad: Required; reject record if this field NULL,63
3 745 aaronmk 
country,"//*_id/namedplace[placesystem=""area|country|territory""]/placename",Brad: Required; reject record if this field NULL,63
4 1118 aaronmk 
StateProvince,"//*_id/namedplace[placesystem=""region|state|province""]/placename",,65
5 745 aaronmk 
stateProvince,"//*_id/namedplace[placesystem=""region|state|province""]/placename",,65
6 1118 aaronmk 
County,//*_id/namedplace[placesystem=county]/placename,,66
7 745 aaronmk 
county,//*_id/namedplace[placesystem=county]/placename,,66
8 1052 aaronmk 
coordinatePrecision,//location/locationdetermination[]/coordsaccuracy,,89
9 1118 aaronmk 
CoordinatePrecision,//location/locationdetermination[]/coordsaccuracy/_noCV/value,,89
10 1052 aaronmk 
coordinatePrecision/_noCV/value,//location/locationdetermination[]/coordsaccuracy/_noCV/value,,89
11 1118 aaronmk 
BoundingBox,//location/locationdetermination[]/footprintgeometry_dwc,,91
12 1025 aaronmk 
footprintWKT,//location/locationdetermination[]/footprintgeometry_dwc,,91
13 967 aaronmk 
locality,//location/locationnarrative/_alt/1,,68
14 1118 aaronmk 
Locality,//location/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
15 967 aaronmk 
verbatimLocality,//location/locationnarrative/_alt/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
16 1118 aaronmk 
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
17 1052 aaronmk 
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
18 1118 aaronmk 
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
19 1052 aaronmk 
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
20 1071 aaronmk 
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/latitude,centerlatitude}/_alt/1/_nullIf/value",,85
21 1118 aaronmk 
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/latitude,centerlatitude}/_alt/2/_nullIf/value",,81
22 1071 aaronmk 
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/latitude,centerlatitude}/_alt/2/_nullIf/value",,81
23 
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/longitude,centerlongitude}/_alt/1/_nullIf/value",,86
24 1118 aaronmk 
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/longitude,centerlongitude}/_alt/2/_nullIf/value",,82
25 1071 aaronmk 
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/longitude,centerlongitude}/_alt/2/_nullIf/value",,82
26 1044 aaronmk 
habitat,//*/commname,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
27 
habitat/_merge/1,//*/commname/_merge/1,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
28 
habitat/_merge/2,//*/commname/_merge/2,"Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
29 970 aaronmk 
bien.substrate,//locationevent/landscapenarrative,,
30 816 aaronmk 
eventDate,//locationevent/obsstartdate,,44
31 1118 aaronmk 
DayCollected,//locationevent/obsstartdate/_alt/2/_date/day,,44
32 816 aaronmk 
eventDate/_alt/2/_date/day,//locationevent/obsstartdate/_alt/2/_date/day,,44
33 1118 aaronmk 
MonthCollected,//locationevent/obsstartdate/_alt/2/_date/month,,44
34 816 aaronmk 
eventDate/_alt/2/_date/month,//locationevent/obsstartdate/_alt/2/_date/month,,44
35 1118 aaronmk 
YearCollected,//locationevent/obsstartdate/_alt/2/_date/year,,44
36 816 aaronmk 
eventDate/_alt/2/_date/year,//locationevent/obsstartdate/_alt/2/_date/year,,44
37 1118 aaronmk 
MaximumDepth,//waterdepth/max,,75
38 745 aaronmk 
maximumDepthInMeters,//waterdepth/max,,75
39 1118 aaronmk 
MinimumDepth,//waterdepth/min,,74
40 741 aaronmk 
minimumDepthInMeters,//waterdepth/min,,74
41 1118 aaronmk 
ScientificNameAuthor,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
42 1111 aaronmk 
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
43 1118 aaronmk 
Sex,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
44 1111 aaronmk 
sex,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
45 
dateIdentified,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate",,120
46 1118 aaronmk 
DayIdentified,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate/_alt/2/_date/day",,120
47 1111 aaronmk 
dateIdentified/_alt/2/_date/day,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate/_alt/2/_date/day",,120
48 1118 aaronmk 
MonthIdentified,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate/_alt/2/_date/month",,120
49 1111 aaronmk 
dateIdentified/_alt/2/_date/month,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate/_alt/2/_date/month",,120
50 1118 aaronmk 
YearIdentified,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate/_alt/2/_date/year",,120
51 1111 aaronmk 
dateIdentified/_alt/2/_date/year,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate/_alt/2/_date/year",,120
52 1118 aaronmk 
IdentifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
53 1111 aaronmk 
identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
54 1118 aaronmk 
ScientificName,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
55 1111 aaronmk 
scientificName,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
56 1118 aaronmk 
Class,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Class]/*_id/plantconcept/*_id/*/plantname",,144
57 1111 aaronmk 
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Class]/*_id/plantconcept/*_id/*/plantname",,144
58 1118 aaronmk 
Family,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Family]/*_id/plantconcept/*_id/*/plantname",,146
59 1111 aaronmk 
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Family]/*_id/plantconcept/*_id/*/plantname",,146
60 1118 aaronmk 
Genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Genus]/*_id/plantconcept/*_id/*/plantname",,147
61 1111 aaronmk 
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Genus]/*_id/plantconcept/*_id/*/plantname",,147
62 1118 aaronmk 
Kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
63 1111 aaronmk 
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
64 1118 aaronmk 
Order,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Order]/*_id/plantconcept/*_id/*/plantname",,145
65 1111 aaronmk 
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Order]/*_id/plantconcept/*_id/*/plantname",,145
66 1118 aaronmk 
Species,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Species]/*_id/plantconcept/*_id/*/plantname",,149
67 1111 aaronmk 
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Species]/*_id/plantconcept/*_id/*/plantname",,149
68 1118 aaronmk 
Phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
69 1111 aaronmk 
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
70 1118 aaronmk 
Subspecies,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Subspecies]/*_id/plantconcept/*_id/*/plantname",,150
71 1111 aaronmk 
infraspecificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Subspecies]/*_id/plantconcept/*_id/*/plantname",,150
72 1118 aaronmk 
Collector,//taxonoccurrence/verbatimcollectorname,,23
73 1050 aaronmk 
recordedBy,//taxonoccurrence/verbatimcollectorname,,23
74 1118 aaronmk 
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
75 1108 aaronmk 
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
76 1052 aaronmk 
fieldNotes,/description,,
77 1118 aaronmk 
Notes,/description/_merge/1,,
78 1052 aaronmk 
fieldNotes/_merge/1,/description/_merge/1,,
79 
"fieldNotes/_merge/2/_label[label=""plant fungus""]/value","/description/_merge/2/_label[label=""plant fungus""]/value",,
80 1118 aaronmk 
CatalogNumber,/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
81 915 aaronmk 
catalogNumber,/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
82 1118 aaronmk 
CollectorNumber,/collectionnumber/_alt/1,,22
83 915 aaronmk 
recordNumber,/collectionnumber/_alt/1,,22
84 
collectionID,/collectionnumber/_alt/2,,9
85 1118 aaronmk 
FieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
86 915 aaronmk 
fieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
87 1118 aaronmk 
InstitutionCode,//party/organizationname/_alt/1,,
88 1108 aaronmk 
institutionCode,//party/organizationname/_alt/1,,
89 1044 aaronmk 
occurrenceID,/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
90 1118 aaronmk 
BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
91 
ContinentOcean,,Brad: OMIT,59
92 
DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
93 
IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
94 
JulianDay,,Brad: OMIT,50
95 
PreparationType,,Brad: OMIT,32
96 
PreviousCatalogNumber,,?; Brad: OMIT,35
97 
RelatedCatalogItem,,Brad: OMIT,161
98 
RelationshipType,,Brad: OMIT,162
99 
TimeOfDay,,Brad: OMIT,45
100 
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
101 745 aaronmk 
acceptedNameUsage,,,135
102 
acceptedNameUsageID,,,128
103 
associatedMedia,,,36
104 
associatedOccurrences,,,38
105 
associatedReferences,,,37
106 
associatedSequences,,,39
107 
associatedTaxa,,,40
108 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
109 
bed,,,117
110 
behavior,,,29
111 741 aaronmk 
continent,,Brad: OMIT,59
112 
coordinateUncertaintyInMeters,,,88
113 745 aaronmk 
countryCode,,,64
114 741 aaronmk 
dataGeneralizations,,,17
115 745 aaronmk 
datasetID,,,10
116 
datasetName,,,13
117 
day,,Brad: OMIT,50
118 
dcterms:accessRights,,,5
119 741 aaronmk 
dcterms:bibliographicCitation,,,6
120 745 aaronmk 
dcterms:language,,,2
121 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
122 
dcterms:references,,,7
123 
dcterms:rights,,,3
124 
dcterms:rightsHolder,,,4
125 741 aaronmk 
dcterms:type,,,0
126 745 aaronmk 
disposition,,,33
127 
dynamicProperties,,,18
128 
earliestAgeOrLowestStage,,,109
129 
earliestEonOrLowestEonothem,,,101
130 
earliestEpochOrLowestSeries,,,107
131 
earliestEraOrLowestErathem,,,103
132 
earliestPeriodOrLowestSystem,,,105
133 
endDayOfYear,,,47
134 
establishmentMeans,,,30
135 741 aaronmk 
eventID,,,41
136 745 aaronmk 
eventRemarks,,,55
137 741 aaronmk 
eventTime,,Brad: OMIT,45
138 745 aaronmk 
footprintSRS,,,92
139 
footprintSpatialFit,,,93
140 
formation,,,115
141 
geodeticDatum,,,87
142 
geologicalContextID,,,100
143 
georeferenceProtocol,,,96
144 741 aaronmk 
georeferenceRemarks,,,99
145 
georeferenceSources,,,97
146 745 aaronmk 
georeferenceVerificationStatus,,,98
147 915 aaronmk 
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
148 745 aaronmk 
georeferencedDate,,,95
149 
group,,,114
150 
higherClassification,,,141
151 
higherGeography,,,58
152 
higherGeographyID,,,57
153 
highestBiostratigraphicZone,,,112
154 
identificationID,,,118
155 
identificationQualifier,,,124
156 741 aaronmk 
identificationReferences,,,121
157 745 aaronmk 
identificationRemarks,,,123
158 
identificationVerificationStatus,,,122
159 
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
160 915 aaronmk 
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
161 745 aaronmk 
informationWithheld,,,16
162 
institutionID,,,8
163 
island,,,62
164 
islandGroup,,,61
165 
latestAgeOrHighestStage,,,110
166 
latestEonOrHighestEonothem,,,102
167 
latestEpochOrHighestSeries,,,108
168 
latestEraOrHighestErathem,,,104
169 
latestPeriodOrHighestSystem,,,106
170 
lifeStage,,,27
171 
lithostratigraphicTerms,,,113
172 
locationAccordingTo,,,78
173 
locationID,,,56
174 
locationRemarks,,,79
175 
lowestBiostratigraphicZone,,,111
176 
maximumDistanceAboveSurfaceInMeters,,,77
177 
measurementAccuracy,,,169
178 
measurementDeterminedBy,,,172
179 
measurementDeterminedDate,,,171
180 
measurementID,,,166
181 
measurementMethod,,,173
182 741 aaronmk 
measurementRemarks,,,174
183 745 aaronmk 
measurementType,,,167
184 
measurementUnit,,,170
185 
measurementValue,,,168
186 
member,,,116
187 
minimumDistanceAboveSurfaceInMeters,,,76
188 
month,,,49
189 
municipality,,,67
190 
nameAccordingTo,,,138
191 
nameAccordingToID,,,131
192 
namePublishedIn,,,139
193 
namePublishedInID,,,132
194 
namePublishedInYear,,,140
195 
nomenclaturalCode,,,155
196 
nomenclaturalStatus,,,157
197 741 aaronmk 
occurrenceRemarks,,,21
198 745 aaronmk 
occurrenceStatus,,,31
199 
originalNameUsage,,,137
200 
originalNameUsageID,,,130
201 
otherCatalogNumbers,,,34
202 741 aaronmk 
ownerInstitutionCode,,,14
203 745 aaronmk 
parentNameUsage,,,136
204 
parentNameUsageID,,,129
205 
pointRadiusSpatialFit,,,90
206 
preparations,,Brad: OMIT,32
207 
previousIdentifications,,Brad: OMIT,35
208 
relatedResourceID,,Brad: OMIT,161
209 
relationshipAccordingTo,,,163
210 741 aaronmk 
relationshipEstablishedDate,,,164
211 745 aaronmk 
relationshipOfResource,,Brad: OMIT,162
212 741 aaronmk 
relationshipRemarks,,,165
213 745 aaronmk 
reproductiveCondition,,,28
214 
resourceID,,,160
215 
resourceRelationshipID,,,159
216 
samplingEffort,,,43
217 
samplingProtocol,,,42
218 
scientificNameID,,,127
219 741 aaronmk 
startDayOfYear,,,46
220 
subgenus,,,148
221 745 aaronmk 
taxonConceptID,,,133
222 741 aaronmk 
taxonID,,,126
223 745 aaronmk 
taxonRank,,,151
224 
taxonRemarks,,,158
225 
taxonomicStatus,,,156
226 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
227 741 aaronmk 
verbatimCoordinateSystem,,,83
228 745 aaronmk 
verbatimCoordinates,,,80
229 741 aaronmk 
verbatimDepth,,,73
230 
verbatimElevation,,,70
231 
verbatimEventDate,,,51
232 745 aaronmk 
verbatimSRS,,,84
233 
verbatimTaxonRank,,,152
234 
vernacularName,,,154
235 
waterBody,,,60
236 
year,,,48