Project

General

Profile

1
selfDir_uZPPqC := $(dir $(lastword $(MAKEFILE_LIST)))
2
root := $(selfDir_uZPPqC)..
3
include $(root)/lib/common.Makefile
4

    
5

    
6
##### Configuration
7

    
8
# Command line
9
continue ?=
10
debug ?=
11
full_import ?=
12
import_source ?= 1
13
is_view ?=
14
log ?= $(if $(test),,1)
15
noclobber ?=
16
profile ?=
17
quiet ?=
18
reverify ?= 1
19
schema_only ?=
20
use_staged ?= $(by_col)
21

    
22
# Makefile
23
exts ?= csv tsv tab txt dat dmp xml
24
test_n ?= 2
25

    
26
##### Vars/functions
27

    
28
# Paths
29
datasrc := $(patsubst .%,%,$(notdir $(realpath .)))
30
bin := $(root)/bin
31
mappings := $(root)/mappings
32

    
33
# Make
34
SHELL := /bin/bash
35
selfMake = $(MAKE) --makefile=../input.Makefile
36
subMake = $(MAKE) "$(@:$(root)/%=%)" --directory=$(root)
37
+_ = $(+:_%=)
38
# used to filter the output of embedded $(shell make ...) invocations
39
filter_make := grep -vF -e lib -e ".Makefile'."
40
addBeforeExt = $(basename $(2))$(1)$(suffix $(2))
41

    
42
# Terminal
43
termCols := $(shell tput cols)
44

    
45
# Commands
46
MKDIR = mkdir -p
47
mkdir = $(MKDIR) $(@D)
48
diff = diff --unified=2
49
diffIgnoreSpace = $(diff) --ignore-space-change
50
diffVerbose = $(if $(verbose),diff --side-by-side --left-column\
51
--width=$(termCols),$(diff))
52

    
53
# BIEN commands
54
sortFilenames = $(shell $(bin)/sort_filenames $(1))
55
selfMap = $(bin)/cols 0 0
56
psqlAsBien := $(bin)/psql_verbose_vegbien
57
psqlNoSearchPath := env no_search_path=1 $(psqlAsBien)
58
# Usage: ($(inDatasrc); cat $(file))|$(psqlCmd)
59
inDatasrc := echo 'SET search_path TO "$(datasrc)";'
60

    
61
# SVN
62
setSvnIgnore = svn propset svn:ignore $(2) $(1)
63
define addDirWithIgnore
64
$(addDir)
65
$(setSvnIgnore)
66
endef
67

    
68
##### Environment
69

    
70
export PATH := $(bin):$(PATH)
71

    
72
##### General targets
73

    
74
all: _always maps ;
75

    
76
clean: _always
77
	$(RM) $(all)
78

    
79
remake: _always clean
80
	+$(selfMake)
81
# re-run make so that cache of existing files is reset
82

    
83
# Only remake if doesn't exist. This prevents unintentional remaking when the
84
# make script is newly checked out from svn (which sets the mod time to now) but
85
# the output is synced externally.
86
# Can't remove prereq to do this, because it determines when the rule applies.
87
make_script = $(if $(wildcard $@),,"time" ./$< >$@)
88

    
89
%/: %/map.csv _always ;
90

    
91
%/: % _always ;
92

    
93
%: %.make
94
	$(make_script)
95
.PRECIOUS: % # save partial outputs of aborted src make scripts
96

    
97
##### Tables discovery
98

    
99
sortFile := import_order.txt
100
noImportFile := _no_import
101

    
102
dontImport = $(wildcard $(noImportFile))$(wildcard $(1)/$(noImportFile))$(if\
103
$(import_source),,$(filter Source,$(1)))
104

    
105
ifeq ($(sort_file_updated),)# keep $(sortFile) up-to-date
106
$(shell sort_file_updated=1 $(selfMake) $(sortFile)|$(filter_make) >&2)
107
export sort_file_updated=1
108
endif
109

    
110
sort_file_tables := $(if $(wildcard $(sortFile)),$(shell cat $(sortFile)))
111
    # $(shell) replaces "\n" with " "
112
tables := $(sort_file_tables)
113
allSubdirs := $(call wildcard/,*/)
114
allTables := $(call sortFilenames,$(filter-out _% verify logs,$(allSubdirs:%/=%)))
115
joinedTables := $(filter-out $(tables),$(allTables))
116
allTables := $(strip $(joinedTables) $(tables))# move joined tables to beginning
117
has_visible_files = $(call wildcard/,$(1)/*)
118
allTables := $(foreach table,$(allTables),$(if\
119
$(call has_visible_files,$(table)),$(table)))
120
ifeq ($(tables),)# none specified in sort file
121
tables := $(allTables)
122
endif
123
importTables := $(foreach table,$(tables),$(if\
124
$(call dontImport,$(table)),,$(table)))
125

    
126
list_tables: _always # use `make -s` to avoid echoing commands
127
	@for table in $(tables); do echo "$$table"; done
128

    
129
$(sortFile): _always
130
	# add any missing tables to $(sortFile)
131
	$(if $(filter-out $(sort_file_tables),$(tables)),$(selfMake) -s list_tables >$@)
132

    
133
##### SVN
134

    
135
svnFilesGlob:= */{,$(noImportFile),{,.}{data,map,VegBIEN}.csv{,.*},*header.*,*.sql,test.xml.ref}
136
svnFilesGlob := {map.csv,*{schema,grants,~}*.sql,{,*/}{*.make,*terms.csv},$(svnFilesGlob)}
137
_svnFilesGlob := {_MySQL/{,*schema*.sql,*.make},{,*/}{*{run,Makefile},*.{md5,url,pdf},*README.TXT}}
138
svnFiles = $(filter-out _% logs/% %.data.sql,$(call wildcard/,$(svnFilesGlob)))\
139
$(call wildcard/,$(_svnFilesGlob))
140

    
141
add: _always $(if $(call dontImport,.),,add!) ;
142

    
143
# To update all inputs with these settings: make inputs/add
144
add!: _always Source/add $(allTables:%=%/add)
145
	$(call setSvnIgnore,.,'*')
146
	$(call addDirWithIgnore,logs,$$'*.gz\n*.log.sql\n*.trace')
147
	$(call addDirWithIgnore,verify,$$'*.out\n*.csv\n*.xls\n*.xlsx')
148
	$(call addFile,import_order.txt)
149
	$(if $(wildcard _MySQL/),$(call addDirWithIgnore,_MySQL,'*'))
150
	$(if $(wildcard _src/),$(call addDirWithIgnore,_src,'*'))
151
	$(if $(wildcard _archive/),$(call addDirWithIgnore,_archive,'*'))
152
	$(call add*,$(svnFiles))
153

    
154
# Adds a new table subdir
155
%/add: _always
156
	$(call addDirWithIgnore,$*,'*')
157
	$(call addDirWithIgnore,$*/logs,$$'*.gz\n*.log.sql\n*.trace')
158

    
159
##### Existing maps discovery
160

    
161
anyMap := %/map.csv %/VegBIEN.csv %/unmapped_terms.csv %/new_terms.csv
162

    
163
exts := $(call ci,$(exts))
164
extsFilter := $(addprefix %.,$(exts))
165
dataOnly = $(filter $(extsFilter),$(1))
166

    
167
anyTest = $*/test.%
168
srcsOnly = $(filter-out $(anyMap) $(anyTest) %/logs,$(call dataOnly,$(1)))
169

    
170
srcDict := map.csv
171

    
172
vocab := $(mappings)/VegCore.vocab.csv
173
thesaurus := $(mappings)/VegCore.thesaurus.csv
174
coreMap := $(mappings)/VegCore-VegBIEN.csv
175

    
176
viaMaps := $(tables:%=%/map.csv)
177

    
178
autogenMaps := $(subst map.,VegBIEN.,$(viaMaps))
179
directMaps := $(autogenMaps) $(filter-out $(autogenMaps),\
180
$(wildcard */VegBIEN.csv))
181

    
182
##### Sources
183

    
184
srcs = $(call sortFilenames,$(call srcsOnly,$(wildcard $*/*)))
185
nonHeaderSrcs = $(filter-out %/header.csv,$(srcs))
186
isRef = $(if $(nonHeaderSrcs),,1)
187
    # empty subdir, so references an already-installed staging table
188
isXml = $(filter %.xml,$(nonHeaderSrcs))
189
nonXml = $(if $(isXml),,1)
190
isCsv = $(if $(nonHeaderSrcs),$(if $(isXml),,1))
191
    # true if $(srcs) non-empty and contains no *.xml
192
catSrcs = $(bin)/cat$(if $(nonXml),_csv) $(nonHeaderSrcs)
193
withCatSrcs = $(catSrcs:$(bin)/%=$(bin)/with_%) --
194

    
195
# Run with `make -s` to avoid echoing make commands
196
cat: $(importTables:%=%/cat) _always ;
197

    
198
%/cat: _always
199
	$(catSrcs)
200

    
201
##### Input data retrieval
202

    
203
# Must come before `%.sql: _MySQL/%.sql` to override it
204
%.sql: %.sql.make
205
	$(make_script)
206

    
207
# The export must be created with:
208
# `--compatible=postgresql --add-locks=false --set-charset --no-create-info`
209
# Must come before `%.sql: _MySQL/%.sql` to override it
210
%.data.sql: _MySQL/%.data.sql
211
	$(if $(wildcard $@),,$(bin)/my2pg.data <$< >$@)
212

    
213
# The export must be created with:
214
# `--compatible=postgresql --add-locks=false --set-charset`
215
# Add `--no-data` to create a schema-only export.
216
%.sql: _MySQL/%.sql
217
	$(if $(wildcard $@),,$(bin)/my2pg <$< >$@)
218

    
219
##### Staging tables installation
220

    
221
srcTable := %.src
222

    
223
dbExportsWildcard = $(sort $(patsubst _MySQL/%.make,%,$(wildcard\
224
$(1) _MySQL/$(1).make)))
225

    
226
dbExports := $(call dbExportsWildcard,*schema*.sql)# schemas first
227
ifeq ($(schema_only),) # add rest of .sql files
228
dbExports += $(filter-out $(dbExports),$(call dbExportsWildcard,*.sql))
229
endif
230
dbExports := $(filter-out grants.sql,$(dbExports))
231
dbExports := $(strip $(dbExports))# += adds extra whitespace
232
allInstalls := $(if $(dbExports),sql) $(allTables)
233

    
234
install: _always schema $(allInstalls:%=%/install) ;
235

    
236
uninstall: _always confirm_rm_schema rm_schema ;
237
# rm_schema will also drop all staging tables
238

    
239
reinstall: _always uninstall install ;
240

    
241
confirm_rm_schema: _always
242
	$(if $(filter TNRS,$(datasrc)),$(call confirm,WARNING: This will delete the\
243
TNRS cache!,To save it: make backups/TNRS.backup-remake))
244

    
245
schema: _always
246
	-echo 'CREATE SCHEMA "$(datasrc)";'|$(psqlNoSearchPath)
247
# ignore errors if schema exists
248

    
249
rm_schema: _always
250
	echo 'DROP SCHEMA IF EXISTS "$(datasrc)" CASCADE;'|$(psqlNoSearchPath)
251

    
252
installLog := logs/install.log.sql
253

    
254
log_dir = $(1)logs
255
has_log_dir = $(call and,$(wildcard $(log_dir)),$(call not,$(noclobber)))
256
logInstall = $(if $(has_log_dir),$(if $(quiet),$(2)$(1)$(installLog)\
257
2>&1,2>&1|tee $(3) $(1)$(installLog)))
258
logInstallRoot = $(call logInstall,,>)
259
logInstall* = $(call logInstall,$*/,>)
260
logInstall*Add = $(call logInstall,$*/,>>,-a)# append to log
261

    
262
# Must come before %/install to override it
263
sql/install: $(dbExports)
264
	($(inDatasrc); cat $+|pg_dump_limit; $(if $(wildcard\
265
grants.sql),cat grants.sql))|"time" env no_search_path=1 \
266
$(bin)/psql_$(if $(debug),verbose,script)_vegbien --set=schema='"$(datasrc)"' \
267
$(logInstallRoot)
268

    
269
# $debug option runs the *.sql import verbosely, to display which statements are
270
# being run. this should only be used for SQL files that use COPY FROM to import
271
# data, to avoid echoing pages of insert statements.
272
cleanup = $(if $(wildcard $*/cleanup.sql),($(inDatasrc); cat $*/cleanup.sql)\
273
|"time" $(psqlNoSearchPath) --echo-all --set=table='"$*"' $(logInstall*Add),\
274
(export schema=$(datasrc) table=$*; . $(bin)/vegbien_dest; unset schemas; \
275
$(bin)/csv2db) $(logInstall*Add))
276

    
277
%/header.csv:
278
	echo 'COPY (SELECT * FROM "$(datasrc)"."$*" LIMIT 0) TO STDOUT CSV HEADER;'|\
279
env no_search_path=1 $(bin)/psql_script_vegbien >$*/header.csv
280

    
281
exportHeader = $(selfMake) "$*/header.csv"
282

    
283
# Don't try to edit a view. Must come before %/install to override it.
284
%_view/install: _always ;
285

    
286
%.sql/run: _always
287
	$(if $(wildcard $(@D)),($(inDatasrc); cat $(@D))|(cd '$(*D)';\
288
"time" env no_search_path=1 ../$(bin)/psql_verbose_vegbien \
289
--set=table='"$(*D)"' --set=table_str=\''"$(*D)"'\'))
290

    
291
%/postprocess.sql: %/map.csv
292
	$(if $(wildcard $*/run),$(bin)/in_place $@ env text=1 $(bin)/repl $<)
293

    
294
%/postprocess: _always
295
	$(if $(wildcard $*/run),,$(selfMake) "$*/postprocess.sql/run")
296

    
297
%/map_table: _always
298
	$(if $(wildcard $*/run),$*/run map_table)
299

    
300
# For staging tables which are derived by joining together other staging tables.
301
%/install: %/create.sql _always
302
	($(inDatasrc); echo 'CREATE TABLE "$*" AS'; cat $<; echo ';')|"time" \
303
$(psqlNoSearchPath) --echo-all --set=schema='"$(datasrc)"' --set=table='"$*"' \
304
$(logInstall*)
305
	$(selfMake) "$*/postprocess"
306
	$(exportHeader)
307
	$(cleanup)
308
	$(selfMake) "$*/map_table"
309

    
310
%/install: _always
311
	$(if $(isCsv),$(import_install_))
312
	$(selfMake) "$*/postprocess"
313
	-$(exportHeader)
314
	-$(if $(isCsv),,$(cleanup))
315
	$(selfMake) "$*/map_table"
316
# ignore errors if table does not exist (non-data dir)
317
define import_install_
318
(. $(bin)/vegbien_dest; unset schemas; "time" nice -n +5\
319
env schema=$(datasrc) table=$* $(bin)/csv2db $(catSrcs) $(logInstall*))
320
$(if $(filter $(srcTable),$*),($(inDatasrc);\
321
echo 'ALTER TABLE "$(datasrc)"."$*" RENAME row_num TO "$*.row_num";')|"time"\
322
$(psqlNoSearchPath) --echo-all --set=table='"$*"' $(logInstall*Add))
323
endef
324
# table-scope src table's row_num col to allow joining it with other tables
325

    
326
%/uninstall: _always
327
	echo 'DROP $(if\
328
$(is_view),VIEW,TABLE) IF EXISTS "$(datasrc)"."$*" CASCADE;'|$(psqlNoSearchPath)
329

    
330
%/reinstall: _always %/uninstall %/install ;
331

    
332
postprocess: _always $(allTables:%=%/postprocess) ;
333

    
334
cleanup: _always $(tables:%=%/cleanup) ;
335

    
336
# WARNING: This removes any index comments, due to a PostgreSQL bug.
337
# This occurs because ALTER TABLE recreates the index but not its comment.
338
%/cleanup: _always
339
	$(cleanup)
340

    
341
##### Maps building
342

    
343
# Maps to (try to) build are added to this
344
maps :=
345

    
346
srcRoot = $(mappings)/root.sh
347
mkSrcMap = (. $(srcRoot); env datasrc=$(datasrc) $(bin)/src_map <$*/header.csv\
348
>$@)
349

    
350
translate = $(if $(wildcard $(1)),$(bin)/in_place $< $(bin)/translate_ci 1 $(1))
351

    
352
$(srcDict):# empty target in case it doesn't exist
353

    
354
# Via maps cleanup
355
ifneq ($(filter %/.map.csv.last_cleanup,$(MAKECMDGOALS)),)
356
%/.map.csv.last_cleanup: %/map.csv $(vocab) $(thesaurus) $(coreMap) $(srcDict)
357
	$(call translate,$(srcDict))
358
	$(bin)/in_place $< $(bin)/canon 1 $(vocab)
359
	$(call translate,$(thesaurus))
360
	$(bin)/in_place $< $(bin)/fix_line_endings
361
	touch $@
362
	+$(selfMake) $(<:%/map.csv=%/unmapped_terms.csv)
363
	+$(selfMake) $(<:%/map.csv=%/new_terms.csv)
364
.PRECIOUS: %/.map.csv.last_cleanup
365
else
366
%/map.csv: _always
367
	$(if $(wildcard $@),,$(mk_map_csv))
368
	+$(selfMake) $(@:%/map.csv=%/.map.csv.last_cleanup)
369
define mk_map_csv
370
+$(selfMake) "$*/header.csv"
371
$(if $(nonXml),$(mkSrcMap))
372
endef
373
endif
374

    
375
%/VegBIEN.csv: %/map.csv $(coreMap)
376
	$(if $(wildcard $*/run),-ln -s "../$(coreMap)" "$@"\
377
,<$< $(bin)/cat_cols 1 2|$(bin)/join $(coreMap)|$(bin)/sort_map >$@)
378
# ignore errors if symlink exists
379
maps += $(autogenMaps)
380

    
381
maps: $(maps) _always ;
382

    
383
all += $(maps)
384

    
385
##### Maps validation
386

    
387
# `tail -n +2`: Remove header before running filter_out_ci because filter_out_ci
388
# only removes the header if it matches the vocabulary's header.
389

    
390
%/unmapped_terms.csv: %/map.csv $(coreMap)
391
	tail -n +2 $<|$(bin)/cols 1|$(bin)/filter_out_ci 0 $(coreMap) >$@
392
	$(bin)/autoremove $@
393

    
394
%/new_terms.csv: %/map.csv $(vocab) $(thesaurus) %/unmapped_terms.csv
395
	$(newTerms)
396
	$(bin)/autoremove $@
397
newTerms = tail -n +2 $<|$(bin)/filter_out_ci 0 $(vocab)|$(bin)/filter_out_ci 0\
398
$(thesaurus) $(if $(wildcard $(word 4,$+)),|$(bin)/filter_out_ci 0 $(word 4,$+))\
399
|grep -vE -e '^"?:' -e 'UNUSED' >$@; exit 0 # grep exits nonzero if no match
400

    
401
termsSubdirs := $(tables)
402

    
403
include $(root)/lib/mappings.Makefile
404

    
405
##### External dependencies
406

    
407
$(root)/%: _always
408
	+$(subMake)
409
.PRECIOUS: $(root)/% # let ext. dir's Makefile decide whether to delete on error
410

    
411
##### Mapping
412

    
413
+maps = $(filter %/map.csv %/VegBIEN.csv $(mappings)/%,$(+_))
414
map2db = env in_database=vegbien in_schema=$(datasrc) in_table=$*\
415
out_database=vegbien source=$(datasrc).new $(root)/map $(+maps)
416

    
417
##### Import to VegBIEN
418

    
419
import: $(importTables:%=%/import) _always ;
420

    
421
import_publish: _always import publish ; # removes temp suffix when done
422

    
423
rm: _always
424
	echo "SELECT datasource_rm('$(datasrc)');"|"time" $(psqlAsBien)
425

    
426
reimport: _always import_publish ; # replace the previous import
427

    
428
profileTest = $(if $(profile),$(if $(test),1))
429
profileOnly = -env profile_to=/dev/fd/3 $(map2db) 3>&1 1>&2|\
430
$(bin)/profile_stats /dev/fd/0
431

    
432
log_ = $*/logs/$(if $(n),n=$(n).,)$(version).log.sql
433

    
434
# Displays the import log file path
435
# Run with `make -s` to avoid echoing make commands
436
%/log_file: _always
437
	echo $$(pwd)/$(log_)
438

    
439
trace = $(log_:.log.sql=.trace)
440
restart_row = $(shell set -x; grep -F Partition: $(log_)|tail -1|$(sed)\
441
's/^.* rows ([[:digit:]]+)-.*$$/\1/')
442
import = -$(if $(profileTest),$(profileOnly),(set -x; date; "time" env commit=1\
443
$(if $(profile),profile_to=$(trace)) $(if $(continue),start=$(restart_row))\
444
$(map2db))$(if $(log), >>$(log_) 2>&1))
445
# don't abort on import errors, which often relate to invalid input data
446

    
447
import? = $(if $(call and,$(full_import),$(call dontImport,.)),,$(import))
448

    
449
%/import: %/VegBIEN.csv _always
450
	$(import?)
451
# default:
452
%/import: _always ;
453

    
454
#### Taxonomic scrubbing
455

    
456
scrub: _always
457
	$(selfMake) $(root)/scrub & echo $$!
458
# using & (background process) ignores TNRS errors, so that TNRS bugs do not
459
# prevent the remaining tables from being imported even if TNRS can't be run
460

    
461
# Removes TNRS taxondeterminations
462
unscrub: _always
463
	echo "SELECT delete_scrubbed_taxondeterminations('$(datasrc)');"|\
464
"time" env no_query_results=1 $(psqlAsBien)
465

    
466
rescrub: _always unscrub scrub ;
467

    
468
import_scrub: _always import scrub ;
469

    
470
reimport_scrub: _always reimport scrub ;
471

    
472
%/import_scrub: _always %/import scrub ;
473

    
474
##### Log files from import
475

    
476
logs := $(wildcard */logs/*.log.sql */logs/*.trace)
477

    
478
rm_logs: _always
479
	$(RM) $(logs)
480

    
481
##### Verification of import
482

    
483
verifyTables := $(patsubst verify/%.ref,%,$(wildcard verify/*.ref))
484

    
485
verify: $(verifyTables:%=%/verify) _always ;
486

    
487
%/verify: verify/%.ref verify/%.out _always
488
	-$(diffVerbose) $(+_)
489
# don't abort on verification errors, which are expected during development
490
# default:
491
%/verify: verify/%.out _always
492
	$(if $(shell test -e $< && echo t),cat $<)
493
# don't run if verify/%.out's default do-nothing action was used
494
# can't use $(wildcard) because it won't recheck file after verify/%.out is run
495

    
496
psqlExport := "time" $(psqlNoSearchPath) --no-align --field-separator=$$'\t'\
497
--pset=footer=off --pset=null=NULL
498
# Note that using $(inDatasrc) will not work with datasources whose tables are
499
# the same name as VegBIEN tables (likely only VegBank), because the datasource
500
# is first in the search_path.
501
verify = $(if $(reverify),($(inDatasrc); cat $<)|$(psqlExport)\
502
--set=datasource="'$(datasrc)'" >$@)
503

    
504
verify/%.out: $(mappings)/verify.%.sql _always
505
	$(verify)
506
.PRECIOUS: verify/%.out # save partial output in case of error to help debugging
507
# default:
508
verify/%.out: _always ;
509

    
510
all += $(wildcard verify/*.out)
511

    
512
%.ref: %.ref.sql
513
	($(inDatasrc); cat $<)|$(psqlExport) >$@
514
.PRECIOUS: %.ref # there must always be a .ref for the make rules to work
515

    
516
##### Editing import
517

    
518
rename/%: _always
519
	echo "UPDATE source SET shortname = '$*' WHERE shortname = '$(datasrc)';"\
520
|$(psqlAsBien)
521

    
522
%/publish: _always # usage: make inputs/src/src.version/publish
523
	echo "SELECT datasource_publish('$*');"|$(psqlAsBien)
524

    
525
publish: _always $(datasrc).new/publish ; # usage: make inputs/src/publish
526

    
527
##### Testing
528

    
529
testRefOutput = $(subst .by_col,,$(1))
530
testRef = $(testRefOutput).ref
531
hasOwnRef = $(filter $@,$(call testRefOutput,$@))
532
# filter returns non-empty if they are equal
533

    
534
# `rm $@`: Remove outputs of successful tests to reduce clutter
535
# `$(foreach use_staged...)`: Run with use_staged=1
536
define runTest
537
@echo "Testing $(abspath $@)..."
538
>$@ env test=1 n=$(test_n) $(1) $(foreach use_staged,1,$(map2db))
539
$(if $(hasOwnRef),,-)@(set -x; $(diffIgnoreSpace) $(call testRef,$@) $@) 2>&1\
540
&& rm $@ || { e=$$?; $(if $(wildcard $(call testRef,$@)),,cat $@;)\
541
$(if $(hasOwnRef),\
542
{\
543
read -p $(emph)'Accept new test output? (y/n)'$(endEmph) REPLY;\
544
if test "$$REPLY" = y; then\
545
(set -x; $(MAKE) $@-ok --directory=$(realpath .) --makefile=../input.Makefile);\
546
exit 0;\
547
fi;\
548
};,\
549
echo $(emph)"Note: The preceding failed test is compared to another test's\
550
output"$(endEmph);\
551
echo $(emph)"When it fails, this always indicates a bug"$(endEmph);\
552
)\
553
exit $$e;}
554
endef
555

    
556
tests :=
557

    
558
%/test: %/test.xml $(if $(by_col),%/test.by_col.xml) _always ;
559

    
560
# Requires staging tables. To create them, run `make inputs/<datasrc>/install`.
561
# Non-flat-file inputs fall back to mimicking a successful test
562
%/test.xml: %/VegBIEN.csv _always
563
	$(if $(nonXml),$(call runTest,by_col=))
564
tests += %/test.xml
565

    
566
%/test.by_col.xml: %/VegBIEN.csv _always
567
	$(if $(nonXml),$(call runTest,by_col=1))
568

    
569
# Only run column-based tests if column-based mode enabled, because these tests
570
# are much slower than the row-based tests for small numbers of rows
571
ifneq ($(by_col),)
572
tests += %/test.by_col.xml
573
endif
574

    
575
testOutputs := $(foreach test,$(tests),$(tables:%=$(test)))
576

    
577
.PRECIOUS: $(testOutputs) # save outputs of failed tests so they can be accepted
578

    
579
test: _always $(testOutputs) ;
580

    
581
all += $(wildcard %/test*.xml)
582

    
583
# Accepts a test output: make <test_output_path>-ok
584
%-ok: _always
585
	mv $* $(call testRef,$*)
586

    
587
accept-all: _always
588
	+yes|$(selfMake) test
589

    
590
##### Documentation
591

    
592
steps = $(selfMake) -s $*/import test=1 by_col=1 verbosity=2 n=100\
593
2>&1|$(bin)/debug2redmine >$@
594

    
595
%/logs/steps.by_col.log.sql: _always
596
	+$(steps)
(9-9/10)