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Revision 1142

Added by Aaron Marcuse-Kubitza almost 13 years ago

inputs/NYBG/maps/DwC.specimens.csv: Removed mappings that are already present in mappings/DwC1-DwC2.specimens.csv. This map now contains only the mappings where NYBG differs from standard DwC1.

View differences:

inputs/NYBG/test/DwC.specimens.xml.ref
2 2 
<DwC xmlns:dcterms="http://purl.org/dc/terms/">
3 3 
    <list id="0">
4 4 
        <institutionCode>NYBG</institutionCode>
5 
        <basisOfRecord>S</basisOfRecord>
6 
        <catalogNumber>00682023</catalogNumber>
7 
        <collectionCode>Herbarium</collectionCode>
8 
        <continent>South America</continent>
9 
        <country>Peru</country>
10 
        <county>Man&#250;</county>
11 
        <day>233</day>
12 
        <dcterms:modified>2005-2-22T14:47:32.000EST</dcterms:modified>
13 
        <eventDate>1984-08-20</eventDate>
14 
        <family>Lecythidaceae</family>
5 
        <BasisOfRecord>S</BasisOfRecord>
6 
        <CatalogNumber>00682023</CatalogNumber>
7 
        <CollectionCode>Herbarium</CollectionCode>
8 
        <Collector>R. B. Foster</Collector>
9 
        <ContinentOcean>South America</ContinentOcean>
10 
        <Country>Peru</Country>
11 
        <County>Man&#250;</County>
12 
        <DateLastModified>2005-2-22T14:47:32.000EST</DateLastModified>
13 
        <DayCollected>20</DayCollected>
14 
        <Family>Lecythidaceae</Family>
15 
        <FieldNumber>9877</FieldNumber>
16 
        <Genus>Cariniana</Genus>
17 
        <JulianDay>233</JulianDay>
18 
        <Kingdom>Plantae</Kingdom>
19 
        <Latitude>-11.80000000</Latitude>
20 
        <Locality>Parque Nacional del Manu. R&#237;o Manu: Cocha Casha Station</Locality>
21 
        <Longitude>-71.40000000</Longitude>
22 
        <MaximumElevation>350</MaximumElevation>
23 
        <MinimumElevation>350</MinimumElevation>
24 
        <MonthCollected>8</MonthCollected>
25 
        <Phylum>Magnoliophyta (flowering plants)</Phylum>
26 
        <ScientificName>Cariniana estrellensis (Raddi) Kuntze</ScientificName>
27 
        <ScientificNameAuthor>(Raddi) Kuntze</ScientificNameAuthor>
28 
        <Species>estrellensis</Species>
29 
        <StateProvince>Madre de Dios</StateProvince>
30 
        <YearCollected>1984</YearCollected>
15 31 
        <fieldNotes>plant fungus: with rough brown bark, almost no buttressing, 1 m diam; fallen fruit and leaves</fieldNotes>
16 
        <fieldNumber>9877</fieldNumber>
17 
        <genus>Cariniana</genus>
18 32 
        <habitat>Floodplain forest</habitat>
19 
        <kingdom>Plantae</kingdom>
20 
        <maximumElevationInMeters>350</maximumElevationInMeters>
21 
        <minimumElevationInMeters>350</minimumElevationInMeters>
22 33 
        <occurrenceID>816590</occurrenceID>
23 
        <phylum>Magnoliophyta (flowering plants)</phylum>
24 
        <recordedBy>R. B. Foster</recordedBy>
25 
        <scientificName>Cariniana estrellensis (Raddi) Kuntze</scientificName>
26 
        <scientificNameAuthorship>(Raddi) Kuntze</scientificNameAuthorship>
27 
        <specificEpithet>estrellensis</specificEpithet>
28 
        <stateProvince>Madre de Dios</stateProvince>
29 
        <verbatimLatitude>-11.80000000</verbatimLatitude>
30 
        <verbatimLocality>Parque Nacional del Manu. R&#237;o Manu: Cocha Casha Station</verbatimLocality>
31 
        <verbatimLongitude>-71.40000000</verbatimLongitude>
32 34 
    </list>
33 35 
    <list id="1">
34 36 
        <institutionCode>NYBG</institutionCode>
35 
        <basisOfRecord>S</basisOfRecord>
36 
        <catalogNumber>200996</catalogNumber>
37 
        <collectionCode>Herbarium</collectionCode>
38 
        <continent>Central America</continent>
39 
        <country>Belize</country>
40 
        <day>17</day>
41 
        <dcterms:modified>2004-1-13T00:00EST</dcterms:modified>
42 
        <eventDate>1994-01-17</eventDate>
43 
        <family>Scrophulariaceae</family>
44 
        <fieldNumber>545</fieldNumber>
45 
        <kingdom>Plantae</kingdom>
46 
        <maximumElevationInMeters>15</maximumElevationInMeters>
47 
        <minimumElevationInMeters>15</minimumElevationInMeters>
37 
        <BasisOfRecord>S</BasisOfRecord>
38 
        <CatalogNumber>200996</CatalogNumber>
39 
        <CollectionCode>Herbarium</CollectionCode>
40 
        <Collector>J. B. Walker</Collector>
41 
        <ContinentOcean>Central America</ContinentOcean>
42 
        <Country>Belize</Country>
43 
        <DateLastModified>2004-1-13T00:00EST</DateLastModified>
44 
        <DayCollected>17</DayCollected>
45 
        <Family>Scrophulariaceae</Family>
46 
        <FieldNumber>545</FieldNumber>
47 
        <JulianDay>17</JulianDay>
48 
        <Kingdom>Plantae</Kingdom>
49 
        <Latitude>17.40000000</Latitude>
50 
        <Locality>Belize Zoo, in savanna plot immediately behind zoo. Mile 31 on Western Highway</Locality>
51 
        <Longitude>-88.50000000</Longitude>
52 
        <MaximumElevation>15</MaximumElevation>
53 
        <MinimumElevation>15</MinimumElevation>
54 
        <MonthCollected>1</MonthCollected>
55 
        <Phylum>Magnoliophyta (flowering plants)</Phylum>
56 
        <ScientificName>Scrophulariaceae</ScientificName>
57 
        <StateProvince>Belize District</StateProvince>
58 
        <YearCollected>1994</YearCollected>
48 59 
        <occurrenceID>220541</occurrenceID>
49 
        <phylum>Magnoliophyta (flowering plants)</phylum>
50 
        <recordedBy>J. B. Walker</recordedBy>
51 
        <scientificName>Scrophulariaceae</scientificName>
52 
        <stateProvince>Belize District</stateProvince>
53 
        <verbatimLatitude>17.40000000</verbatimLatitude>
54 
        <verbatimLocality>Belize Zoo, in savanna plot immediately behind zoo. Mile 31 on Western Highway</verbatimLocality>
55 
        <verbatimLongitude>-88.50000000</verbatimLongitude>
56 60 
    </list>
57 61 
</DwC>
inputs/NYBG/maps/DwC.specimens.csv
1 1 
"NYBG-DwC:nybg_raw","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/","Comments"
2 2 
"key",,
3 
"DateLastModified","dcterms:modified",
4 
"InstitutionCode",,
5 
"CollectionCode","collectionCode",
6 
"CatalogNumber","catalogNumber",
7 
"ScientificName","scientificName",
8 
"BasisOfRecord","basisOfRecord",
9 
"Kingdom","kingdom",
10 
"Phylum","phylum",
11 
"Class","class",
12 
"Order","order",
13 
"Family","family",
14 
"Genus","genus",
15 
"Species","specificEpithet",
16 
"Subspecies","infraspecificEpithet",
17 
"ScientificNameAuthor","scientificNameAuthorship",
18 
"IdentifiedBy","identifiedBy",
19 
"YearIdentified","dateIdentified/_alt/2/_date/year",
20 
"MonthIdentified","dateIdentified/_alt/2/_date/month",
21 
"DayIdentified","dateIdentified/_alt/2/_date/day",
3 
"InstitutionCode",,"Map to nothing so it doesn't overwrite the auto-generated institutionCode"
22 4 
"IdentifiedDate",,
23 
"TypeStatus","typeStatus",
24 
"CollectorNumber","recordNumber",
25 
"FieldNumber","fieldNumber",
26 
"Collector","recordedBy",
27 
"YearCollected","eventDate/_alt/2/_date/year",
28 
"MonthCollected","eventDate/_alt/2/_date/month",
29 
"DayCollected","eventDate/_alt/2/_date/day",
30 5 
"CollectedDate",,
31 
"JulianDay","day",
32 
"TimeOfDay","eventTime",
33 
"ContinentOcean","continent",
34 
"Country","country",
35 
"StateProvince","stateProvince",
36 
"County","county",
37 
"Locality","verbatimLocality",
38 
"Longitude","verbatimLongitude",
39 
"Latitude","verbatimLatitude",
40 
"CoordinatePrecision","coordinatePrecision/_noCV/value",
41 
"BoundingBox","footprintWKT",
42 
"MinimumElevation","minimumElevationInMeters",
43 
"MaximumElevation","maximumElevationInMeters",
44 
"MinimumDepth","minimumDepthInMeters",
45 
"MaximumDepth","maximumDepthInMeters",
46 
"Sex","sex",
47 
"PreparationType","preparations",
48 
"IndividualCount","individualCount",
49 
"PreviousCatalogNumber","previousIdentifications","?"
50 
"RelationshipType","relationshipOfResource",
51 
"RelatedCatalogItem","relatedResourceID",
52 6 
"Notes","fieldNotes/_merge/1",
53 7 
"Habitat","habitat/_merge/1",
54 8 
"PlantFungusDescription","fieldNotes/_merge/2/_label[label=""plant fungus""]/value",
inputs/NYBG/maps/DwC.specimens.full.csv
1 1 
NYBG-DwC:nybg_raw,"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/",Comments
2 
BasisOfRecord,BasisOfRecord
3 
BoundingBox,BoundingBox
4 
CatalogNumber,CatalogNumber
5 
Class,Class
6 
CollectionCode,CollectionCode
7 
Collector,Collector
8 
CollectorNumber,CollectorNumber
9 
ContinentOcean,ContinentOcean
10 
CoordinatePrecision,CoordinatePrecision
11 
Country,Country
12 
County,County
13 
DateLastModified,DateLastModified
14 
DayCollected,DayCollected
15 
DayIdentified,DayIdentified
16 
Family,Family
17 
FieldNumber,FieldNumber
18 
Genus,Genus
19 
IdentifiedBy,IdentifiedBy
20 
IndividualCount,IndividualCount
21 
JulianDay,JulianDay
22 
Kingdom,Kingdom
23 
Latitude,Latitude
24 
Locality,Locality
25 
Longitude,Longitude
26 
MaximumDepth,MaximumDepth
27 
MaximumElevation,MaximumElevation
28 
MinimumDepth,MinimumDepth
29 
MinimumElevation,MinimumElevation
30 
MonthCollected,MonthCollected
31 
MonthIdentified,MonthIdentified
32 
Order,Order
33 
Phylum,Phylum
34 
PreparationType,PreparationType
35 
PreviousCatalogNumber,PreviousCatalogNumber
36 
RelatedCatalogItem,RelatedCatalogItem
37 
RelationshipType,RelationshipType
38 
ScientificName,ScientificName
39 
ScientificNameAuthor,ScientificNameAuthor
40 
Sex,Sex
41 
Species,Species
42 
StateProvince,StateProvince
43 
Subspecies,Subspecies
44 
TimeOfDay,TimeOfDay
45 
TypeStatus,TypeStatus
46 
YearCollected,YearCollected
47 
YearIdentified,YearIdentified
2 48 
acceptedNameUsage,acceptedNameUsage
3 49 
acceptedNameUsageID,acceptedNameUsageID
4 50 
associatedMedia,associatedMedia
......
6 52 
associatedReferences,associatedReferences
7 53 
associatedSequences,associatedSequences
8 54 
associatedTaxa,associatedTaxa
9 
BasisOfRecord,basisOfRecord,
10 55 
basisOfRecord,basisOfRecord
11 56 
bed,bed
12 57 
behavior,behavior
13 58 
Substrate,bien.substrate,
14 59 
bien.substrate,bien.substrate
15 
CatalogNumber,catalogNumber,
16 60 
catalogNumber,catalogNumber
17 
Class,class,
18 61 
class,class
19 
CollectionCode,collectionCode,
20 62 
collectionCode,collectionCode
21 63 
collectionID,collectionID
22 
ContinentOcean,continent,
23 64 
continent,continent
24 65 
coordinatePrecision,coordinatePrecision
25 
CoordinatePrecision,coordinatePrecision/_noCV/value,
26 66 
coordinatePrecision/_noCV/value,coordinatePrecision/_noCV/value
27 67 
coordinateUncertaintyInMeters,coordinateUncertaintyInMeters
28 
Country,country,
29 68 
country,country
30 69 
countryCode,countryCode
31 
County,county,
32 70 
county,county
33 71 
dataGeneralizations,dataGeneralizations
34 72 
datasetID,datasetID
35 73 
datasetName,datasetName
36 74 
dateIdentified,dateIdentified
37 
DayIdentified,dateIdentified/_alt/2/_date/day,
38 75 
dateIdentified/_alt/2/_date/day,dateIdentified/_alt/2/_date/day
39 
MonthIdentified,dateIdentified/_alt/2/_date/month,
40 76 
dateIdentified/_alt/2/_date/month,dateIdentified/_alt/2/_date/month
41 
YearIdentified,dateIdentified/_alt/2/_date/year,
42 77 
dateIdentified/_alt/2/_date/year,dateIdentified/_alt/2/_date/year
43 
JulianDay,day,
44 78 
day,day
45 79 
dcterms:accessRights,dcterms:accessRights
46 80 
dcterms:bibliographicCitation,dcterms:bibliographicCitation
47 81 
dcterms:language,dcterms:language
48 
DateLastModified,dcterms:modified,
49 82 
dcterms:modified,dcterms:modified
50 83 
dcterms:references,dcterms:references
51 84 
dcterms:rights,dcterms:rights
......
63 96 
endDayOfYear,endDayOfYear
64 97 
establishmentMeans,establishmentMeans
65 98 
eventDate,eventDate
66 
DayCollected,eventDate/_alt/2/_date/day,
67 99 
eventDate/_alt/2/_date/day,eventDate/_alt/2/_date/day
68 
MonthCollected,eventDate/_alt/2/_date/month,
69 100 
eventDate/_alt/2/_date/month,eventDate/_alt/2/_date/month
70 
YearCollected,eventDate/_alt/2/_date/year,
71 101 
eventDate/_alt/2/_date/year,eventDate/_alt/2/_date/year
72 102 
eventID,eventID
73 103 
eventRemarks,eventRemarks
74 
TimeOfDay,eventTime,
75 104 
eventTime,eventTime
76 
Family,family,
77 105 
family,family
78 106 
fieldNotes,fieldNotes
79 107 
Notes,fieldNotes/_merge/1,
80 108 
fieldNotes/_merge/1,fieldNotes/_merge/1
81 109 
PlantFungusDescription,"fieldNotes/_merge/2/_label[label=""plant fungus""]/value",
82 110 
"fieldNotes/_merge/2/_label[label=""plant fungus""]/value","fieldNotes/_merge/2/_label[label=""plant fungus""]/value"
83 
FieldNumber,fieldNumber,
84 111 
fieldNumber,fieldNumber
85 112 
footprintSRS,footprintSRS
86 113 
footprintSpatialFit,footprintSpatialFit
87 
BoundingBox,footprintWKT,
88 114 
footprintWKT,footprintWKT
89 115 
formation,formation
90 
Genus,genus,
91 116 
genus,genus
92 117 
geodeticDatum,geodeticDatum
93 118 
geologicalContextID,geologicalContextID
......
112 137 
identificationReferences,identificationReferences
113 138 
identificationRemarks,identificationRemarks
114 139 
identificationVerificationStatus,identificationVerificationStatus
115 
IdentifiedBy,identifiedBy,
116 140 
identifiedBy,identifiedBy
117 
IndividualCount,individualCount,
118 141 
individualCount,individualCount
119 142 
individualID,individualID
120 143 
informationWithheld,informationWithheld
121 
Subspecies,infraspecificEpithet,
122 144 
infraspecificEpithet,infraspecificEpithet
123 145 
institutionCode,institutionCode
124 146 
institutionID,institutionID
125 147 
island,island
126 148 
islandGroup,islandGroup
127 
Kingdom,kingdom,
128 149 
kingdom,kingdom
129 150 
latestAgeOrHighestStage,latestAgeOrHighestStage
130 151 
latestEonOrHighestEonothem,latestEonOrHighestEonothem
......
138 159 
locationID,locationID
139 160 
locationRemarks,locationRemarks
140 161 
lowestBiostratigraphicZone,lowestBiostratigraphicZone
141 
MaximumDepth,maximumDepthInMeters,
142 162 
maximumDepthInMeters,maximumDepthInMeters
143 163 
maximumDistanceAboveSurfaceInMeters,maximumDistanceAboveSurfaceInMeters
144 
MaximumElevation,maximumElevationInMeters,
145 164 
maximumElevationInMeters,maximumElevationInMeters
146 165 
measurementAccuracy,measurementAccuracy
147 166 
measurementDeterminedBy,measurementDeterminedBy
......
153 172 
measurementUnit,measurementUnit
154 173 
measurementValue,measurementValue
155 174 
member,member
156 
MinimumDepth,minimumDepthInMeters,
157 175 
minimumDepthInMeters,minimumDepthInMeters
158 176 
minimumDistanceAboveSurfaceInMeters,minimumDistanceAboveSurfaceInMeters
159 
MinimumElevation,minimumElevationInMeters,
160 177 
minimumElevationInMeters,minimumElevationInMeters
161 178 
month,month
162 179 
municipality,municipality
......
171 188 
occurrenceID,occurrenceID
172 189 
occurrenceRemarks,occurrenceRemarks
173 190 
occurrenceStatus,occurrenceStatus
174 
Order,order,
175 191 
order,order
176 192 
originalNameUsage,originalNameUsage
177 193 
originalNameUsageID,originalNameUsageID
......
179 195 
ownerInstitutionCode,ownerInstitutionCode
180 196 
parentNameUsage,parentNameUsage
181 197 
parentNameUsageID,parentNameUsageID
182 
Phylum,phylum,
183 198 
phylum,phylum
184 199 
pointRadiusSpatialFit,pointRadiusSpatialFit
185 
PreparationType,preparations,
186 200 
preparations,preparations
187 
PreviousCatalogNumber,previousIdentifications,?
188 201 
previousIdentifications,previousIdentifications
189 
CollectorNumber,recordNumber,
190 202 
recordNumber,recordNumber
191 
Collector,recordedBy,
192 203 
recordedBy,recordedBy
193 
RelatedCatalogItem,relatedResourceID,
194 204 
relatedResourceID,relatedResourceID
195 205 
relationshipAccordingTo,relationshipAccordingTo
196 206 
relationshipEstablishedDate,relationshipEstablishedDate
197 
RelationshipType,relationshipOfResource,
198 207 
relationshipOfResource,relationshipOfResource
199 208 
relationshipRemarks,relationshipRemarks
200 209 
reproductiveCondition,reproductiveCondition
......
202 211 
resourceRelationshipID,resourceRelationshipID
203 212 
samplingEffort,samplingEffort
204 213 
samplingProtocol,samplingProtocol
205 
ScientificName,scientificName,
206 214 
scientificName,scientificName
207 
ScientificNameAuthor,scientificNameAuthorship,
208 215 
scientificNameAuthorship,scientificNameAuthorship
209 216 
scientificNameID,scientificNameID
210 
Sex,sex,
211 217 
sex,sex
212 
Species,specificEpithet,
213 218 
specificEpithet,specificEpithet
214 219 
startDayOfYear,startDayOfYear
215 
StateProvince,stateProvince,
216 220 
stateProvince,stateProvince
217 221 
subgenus,subgenus
218 222 
taxonConceptID,taxonConceptID
......
220 224 
taxonRank,taxonRank
221 225 
taxonRemarks,taxonRemarks
222 226 
taxonomicStatus,taxonomicStatus
223 
TypeStatus,typeStatus,
224 227 
typeStatus,typeStatus
225 228 
verbatimCoordinateSystem,verbatimCoordinateSystem
226 229 
verbatimCoordinates,verbatimCoordinates
227 230 
verbatimDepth,verbatimDepth
228 231 
verbatimElevation,verbatimElevation
229 232 
verbatimEventDate,verbatimEventDate
230 
Latitude,verbatimLatitude,
231 233 
verbatimLatitude,verbatimLatitude
232 
Locality,verbatimLocality,
233 234 
verbatimLocality,verbatimLocality
234 
Longitude,verbatimLongitude,
235 235 
verbatimLongitude,verbatimLongitude
236 236 
verbatimSRS,verbatimSRS
237 237 
verbatimTaxonRank,verbatimTaxonRank
......
240 240 
year,year
241 241 
CollectedDate,,
242 242 
IdentifiedDate,,
243 
InstitutionCode,,
243 
InstitutionCode,,Map to nothing so it doesn't overwrite the auto-generated institutionCode
244 244 
key,,
inputs/NYBG/maps/VegBIEN.specimens.csv
97 97 
DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
98 98 
IdentifiedDate,,
99 99 
IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
100 
InstitutionCode,,
100 
InstitutionCode,,Map to nothing so it doesn't overwrite the auto-generated institutionCode
101 101 
JulianDay,,Brad: OMIT,50
102 102 
PreparationType,,Brad: OMIT,32
103 103 
PreviousCatalogNumber,,?; Brad: OMIT,35

Also available in: Unified diff