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Revision 11444

Added by Aaron Marcuse-Kubitza about 11 years ago

derived/biengeo/README.txt: moved commands to run to the top of the README. flagged commands-sections with *** and an identifying label.

View differences:

derived/biengeo/README.txt
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BIEN geovalidation notes
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========================
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Dependencies:


  		




  
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***** install dependencies:


  		




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The only dependencies for running these scripts are PostgreSQL 9.1, postgis 2.0,


  		




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and unzip.


  		




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Installing these packages on Ubuntu 13.04 should be as simple as these commands:


  		




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sudo apt-get install postgresql-9.1-postgis-2.0


  		




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sudo apt-get install unzip


  		




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[Also see comments embedded in specific scripts in this directory.]


  		




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The bash and SQL statements contained in the files as ordered below


  		




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should be applied to carry out geographic name scrubbing and


  		




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geovalidation on a given corpus of BIEN location records.


  		




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That said, given the tight deadline under which this was done in order


  		




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to produced a geovalidated BIEN3 corpus in advance of the Nov 2013


  		




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working group meeting, and the corresponding manner in which much of


  		




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this was actually executed piecemeal in an iterative and interactive


  		




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fashion within a bash shell and psql session, I can't guarantee that the


  		




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code in its current state could be run end-to-end without intervention.


  		




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It's close, but probably not bulletproof.


  		




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***** initialize the DB:


  		




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1. geovalidate.sh


  		




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   - creates postgis DB and loads GADM2 data


  		




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2. geonames.sh


  		




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3. geonames-to-gadm.sql


  		




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   - contains SQL statements that build linkages between geonames.org


  		




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     names and GADM2 names


  		




  
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***** geoscrub new data:


  		




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4. load-geoscrub-input.sh


  		




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   - dumps geoscrub_input from vegbien and loads it into the geoscrub db


  		




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5. geonames.sql


  		




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   - contains (postgis-extended) SQL statements that score the validity


  		




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     of GADM2-scrubbed names against given point coordinates


  		




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[Also see comments embedded in specific scripts in this directory.]


  		




  
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The bash and SQL statements contained in the files as ordered below


  		




  
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should be applied to carry out geographic name scrubbing and


  		




  
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geovalidation on a given corpus of BIEN location records.


  		




  
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That said, given the tight deadline under which this was done in order


  		




  
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to produced a geovalidated BIEN3 corpus in advance of the Nov 2013


  		




  
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working group meeting, and the corresponding manner in which much of


  		




  
  43
  
    
this was actually executed piecemeal in an iterative and interactive


  		




  
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fashion within a bash shell and psql session, I can't guarantee that the


  		




  
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code in its current state could be run end-to-end without intervention.


  		




  
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It's close, but probably not bulletproof.


  		




  
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The resulting 'geoscrub' table is what contains the scrubbed (i.e.,


  		




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GADM2-matched) names and various geovalidation scores.


  		




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