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Revision 11479

Added by Paul Sarando about 11 years ago

Updated load-geoscrub script with configurable db.

load-geoscrub-input.sh now uses a variable with the db name defined at
the top of the script.
Updated the default db host to 'localhost' for this script.

View differences:

derived/biengeo/load-geoscrub-input.sh
15 15 
# Jim Regetz
16 16 
# NCEAS
17 17 
# Created Nov 2012
18 
#
19 
# Paul Sarando
20 
# iPlant Collaborative
21 
# Updated Oct 2013
18 22 

  		




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# Note, to force data to download from DATA_URL, ensure the DATAFILE is deleted


  		




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# before running this script.


  		




  21
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  26
  
    
DB_NAME="geoscrub"


  		




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DB_USER="bien"


  		




  23
  
  
    
DB_HOST="vegbiendev"


  		




  
  28
  
    
DB_HOST="localhost"


  		




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SCRIPT_DIR=$(dirname $0)


  		




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DATA_URL="http://fs.vegpath.org/exports/geoscrub_input.no_header.cols=country,stateProvince,county,decimalLatitude,decimalLongitude.csv"


  		




  26
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DATADIR="${SCRIPT_DIR}/input"


  		




  ......




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echo "Loading vegbien data from ${DATAFILE}"


  		




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# clear previous data


  		




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psql -e -U "$DB_USER" -h "$DB_HOST" -d geoscrub --set ON_ERROR_STOP=1 < "${SCRIPT_DIR}/truncate.vegbien_geoscrub.sql"


  		




  
  57
  
    
psql -e -U "$DB_USER" -h "$DB_HOST" -d "$DB_NAME" --set ON_ERROR_STOP=1 < "${SCRIPT_DIR}/truncate.vegbien_geoscrub.sql"


  		




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if [[ $? != 0 ]]; then


  		




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    echo "Could not clear data from vegbien_geoscrub tables."


  		




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    exit 1


  		




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fi


  		




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# load


  		




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psql -U "$DB_USER" -h "$DB_HOST" -c "\COPY vegbien_geoscrub FROM '${DATAFILE}' WITH CSV" geoscrub


  		




  
  64
  
    
psql -U "$DB_USER" -h "$DB_HOST" -d "$DB_NAME" -c "\COPY vegbien_geoscrub FROM '${DATAFILE}' WITH CSV"


  		




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