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Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11355 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11456 about 11 years Aaron Marcuse-Kubitza bugfix: bin/with_all: @inputs default value: us...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11497 about 11 years Paul Sarando Updated biengeo README with new script workflow.
  exports 11485 about 11 years Aaron Marcuse-Kubitza added exports/2013-7-10.Naia.range_limiting_fac...
  inputs 11492 about 11 years Aaron Marcuse-Kubitza inputs/SALVIAS/projects/postprocess.sql: remove...
  lib 11462 about 11 years Aaron Marcuse-Kubitza lib/runscripts/import_subset.run: $version: use...
  mappings 11107 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: nest all ...
  planning 11486 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11500 about 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: use plain taxondeterminati...
  web 11403 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.7 KB 11150 about 11 years Aaron Marcuse-Kubitza /Makefile: mk_db: config/users.sql: unset ON_ER...
README.TXT 24.2 KB 11263 about 11 years Aaron Marcuse-Kubitza /README.TXT: Single datasource import: added po...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 661 Bytes 10881 about 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): updated runtime (2...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
11500 10/30/2013 06:42 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: use plain taxondetermination.iscurrent instead of is_datasource_current since these are now the same
11499 10/30/2013 06:38 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination_set_iscurrent(): is_datasource_current: set to the same value as iscurrent, since these now have the same formula
11498 10/30/2013 06:34 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination_set_iscurrent(): removed no longer used accepted, matched determinationtypes (for these determinations, left-join to TNRS.ScrubbedTaxon)
11497 10/30/2013 06:24 PM Paul Sarando

Updated biengeo README with new script workflow.
11496 10/30/2013 06:24 PM Paul Sarando

Split geovalidate.sh into install and update scripts.

Split geovalidate.sh into install.sh and update_gadm_data.sh scripts.
The install.sh script creates the databse and uses the install sql
scripts to create all required tables.
The update_gadm_data.sh script downloads the GADM data and creates the...
11495 10/30/2013 06:24 PM Paul Sarando

Refactored geonames.sh to update_geonames_data.sh

Renamed geonames.sh to update_geonames_data.sh and moved many of the SQL
statements from the bash script into supporting update and truncate sql
scripts.
These sql and update_geonames_data.sh scripts now assume all required...
11494 10/30/2013 06:24 PM Paul Sarando

Split up geonames-to-gadm.sql into 3 scripts.

Each script only operates on one table within a transaction.
These scripts now assume the tables have already been created (by
install scripts added in a previous commit), and each starts out by
truncating the table it will update with new data.
11493 10/30/2013 06:24 PM Paul Sarando

Added geoscrub.sh script.

This script runs the load-geoscrub-input.sh, geonames.sql, and
geovalidate.sql scripts in order to load and scrub vegbien input data.
Updated README to explain the new script.
Minor updates to load-geoscrub-input.sh.
11492 10/30/2013 06:03 PM Aaron Marcuse-Kubitza

inputs/SALVIAS/projects/postprocess.sql: remove institutions that we have direct data for: documented that most of the 13139 removed plots are from duplicates (where we have direct data). this leaves only 560 of SALVIAS's original 13699 plots.
11491 10/30/2013 05:53 PM Aaron Marcuse-Kubitza

inputs/SALVIAS/projects/postprocess.sql: remove example data

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