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Name Size Revision Age Author Comment
  BIEN2 10896 over 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11355 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11456 about 11 years Aaron Marcuse-Kubitza bugfix: bin/with_all: @inputs default value: us...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11497 about 11 years Paul Sarando Updated biengeo README with new script workflow.
  exports 11485 about 11 years Aaron Marcuse-Kubitza added exports/2013-7-10.Naia.range_limiting_fac...
  inputs 11492 about 11 years Aaron Marcuse-Kubitza inputs/SALVIAS/projects/postprocess.sql: remove...
  lib 11462 about 11 years Aaron Marcuse-Kubitza lib/runscripts/import_subset.run: $version: use...
  mappings 11107 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: nest all ...
  planning 11486 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11503 about 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxondetermination.is_data...
  web 11403 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.7 KB 11150 about 11 years Aaron Marcuse-Kubitza /Makefile: mk_db: config/users.sql: unset ON_ER...
README.TXT 24.2 KB 11263 about 11 years Aaron Marcuse-Kubitza /README.TXT: Single datasource import: added po...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 661 Bytes 10881 over 11 years Aaron Marcuse-Kubitza /run: geoscrub_input/make(): updated runtime (2...
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
11503 10/30/2013 07:08 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination.is_datasource_current: renamed to iscurrent__verbatim and made it nullable, so that this can be used to store the verbatim iscurrent status
11502 10/30/2013 07:04 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination_set_iscurrent(): removed setting of is_datasource_current (which is now the same as iscurrent), so that this can be used to store the verbatim iscurrent status
11501 10/30/2013 06:59 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination_set_iscurrent(): isoriginal: make sure it is always either true or false, so that if the NOT NULL constraint on this is ever removed you don't end up with the incorrect sort order false, true, NULL (it should be false=NULL, true)
11500 10/30/2013 06:42 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: use plain taxondetermination.iscurrent instead of is_datasource_current since these are now the same
11499 10/30/2013 06:38 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination_set_iscurrent(): is_datasource_current: set to the same value as iscurrent, since these now have the same formula
11498 10/30/2013 06:34 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination_set_iscurrent(): removed no longer used accepted, matched determinationtypes (for these determinations, left-join to TNRS.ScrubbedTaxon)
11497 10/30/2013 06:24 PM Paul Sarando

Updated biengeo README with new script workflow.
11496 10/30/2013 06:24 PM Paul Sarando

Split geovalidate.sh into install and update scripts.

Split geovalidate.sh into install.sh and update_gadm_data.sh scripts.
The install.sh script creates the databse and uses the install sql
scripts to create all required tables.
The update_gadm_data.sh script downloads the GADM data and creates the...
11495 10/30/2013 06:24 PM Paul Sarando

Refactored geonames.sh to update_geonames_data.sh

Renamed geonames.sh to update_geonames_data.sh and moved many of the SQL
statements from the bash script into supporting update and truncate sql
scripts.
These sql and update_geonames_data.sh scripts now assume all required...
11494 10/30/2013 06:24 PM Paul Sarando

Split up geonames-to-gadm.sql into 3 scripts.

Each script only operates on one table within a transaction.
These scripts now assume the tables have already been created (by
install scripts added in a previous commit), and each starts out by
truncating the table it will update with new data.

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