Revision 11562
Added by Paul Sarando about 11 years ago
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***** obtain source code: |
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svn co https://code.nceas.ucsb.edu/code/projects/bien/derived/biengeo/ |
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additional, in-progress files are at |
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sftp://vegbiendev.nceas.ucsb.edu/home/psarando/src/bien/derived/biengeo/ |
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***** install dependencies: |
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The only dependencies for running these scripts are PostgreSQL 9.1, postgis 2.0, |
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sudo apt-get install postgresql-9.1-postgis-2.0-scripts |
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***** Notes on running the shell scripts: |
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Running any script with the -? or --help option will print a usage message with |
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all available options for that script, and then exit. |
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The following scripts accept database connection options, similar to psql. |
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For example: setup.sh -d dbname -h hostname -U username |
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The defaults passed to psql commands, if no options are given to the shell |
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scripts, are 'geoscrub' for dbname and 'bien' for username. The -h option is |
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not passed to psql commands by default. |
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The update_validation_data.sh scripts will only download fresh validation data |
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if the directories for GADM data (~/gadm_v2_shp by default) and geonames.org |
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data (~/geonames by default) do not already exist or do not contain that data. |
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The geoscrub scripts will only download fresh input data if the directory for |
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the input data (~/geoscrub_input by default) does not already exist or does not |
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contain the geoscrub-corpus.csv input file. |
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***** initialize the DB: |
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cd <svn_biengeo_root> |
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1. setup.sh |
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***** update geoscrub validation data: |
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runtime: ~40 minutes |
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cd <svn_biengeo_root> |
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2. update_validation_data.sh |
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2. update_validation_data.sh [--gadm-data=gadm_dir] [--geonames-data=geonames_dir]
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- runs the following scripts in order to load validation data: |
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* update_gadm_data.sh |
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runtime: ~15 minutes (not including download time) |
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WARNING: deletes any previous geoscrubbing results! |
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runtime: ~5.5 h |
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cd <svn_biengeo_root> |
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3. geoscrub.sh |
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3. geoscrub.sh [--geoscrub-input=input_dir]
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- runs the following scripts in order to load and scrub vegbien input data: |
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* load-geoscrub-input.sh |
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- dumps geoscrub_input from vegbien and loads it into the geoscrub db |
Also available in: Unified diff
Added notes on running biengeo scripts to README.