Revision 11562
Added by Paul Sarando about 11 years ago
| README.txt | ||
|---|---|---|
| 3 | 3 |
|
| 4 | 4 |
***** obtain source code: |
| 5 | 5 |
svn co https://code.nceas.ucsb.edu/code/projects/bien/derived/biengeo/ |
| 6 |
additional, in-progress files are at |
|
| 7 |
sftp://vegbiendev.nceas.ucsb.edu/home/psarando/src/bien/derived/biengeo/ |
|
| 8 | 6 |
|
| 9 | 7 |
***** install dependencies: |
| 10 | 8 |
The only dependencies for running these scripts are PostgreSQL 9.1, postgis 2.0, |
| ... | ... | |
| 23 | 21 |
sudo apt-get install postgresql-9.1-postgis-2.0-scripts |
| 24 | 22 |
|
| 25 | 23 |
|
| 24 |
***** Notes on running the shell scripts: |
|
| 25 |
Running any script with the -? or --help option will print a usage message with |
|
| 26 |
all available options for that script, and then exit. |
|
| 27 |
|
|
| 28 |
The following scripts accept database connection options, similar to psql. |
|
| 29 |
For example: setup.sh -d dbname -h hostname -U username |
|
| 30 |
The defaults passed to psql commands, if no options are given to the shell |
|
| 31 |
scripts, are 'geoscrub' for dbname and 'bien' for username. The -h option is |
|
| 32 |
not passed to psql commands by default. |
|
| 33 |
|
|
| 34 |
The update_validation_data.sh scripts will only download fresh validation data |
|
| 35 |
if the directories for GADM data (~/gadm_v2_shp by default) and geonames.org |
|
| 36 |
data (~/geonames by default) do not already exist or do not contain that data. |
|
| 37 |
|
|
| 38 |
The geoscrub scripts will only download fresh input data if the directory for |
|
| 39 |
the input data (~/geoscrub_input by default) does not already exist or does not |
|
| 40 |
contain the geoscrub-corpus.csv input file. |
|
| 41 |
|
|
| 26 | 42 |
***** initialize the DB: |
| 27 | 43 |
cd <svn_biengeo_root> |
| 28 | 44 |
1. setup.sh |
| ... | ... | |
| 31 | 47 |
***** update geoscrub validation data: |
| 32 | 48 |
runtime: ~40 minutes |
| 33 | 49 |
cd <svn_biengeo_root> |
| 34 |
2. update_validation_data.sh |
|
| 50 |
2. update_validation_data.sh [--gadm-data=gadm_dir] [--geonames-data=geonames_dir]
|
|
| 35 | 51 |
- runs the following scripts in order to load validation data: |
| 36 | 52 |
* update_gadm_data.sh |
| 37 | 53 |
runtime: ~15 minutes (not including download time) |
| ... | ... | |
| 48 | 64 |
WARNING: deletes any previous geoscrubbing results! |
| 49 | 65 |
runtime: ~5.5 h |
| 50 | 66 |
cd <svn_biengeo_root> |
| 51 |
3. geoscrub.sh |
|
| 67 |
3. geoscrub.sh [--geoscrub-input=input_dir]
|
|
| 52 | 68 |
- runs the following scripts in order to load and scrub vegbien input data: |
| 53 | 69 |
* load-geoscrub-input.sh |
| 54 | 70 |
- dumps geoscrub_input from vegbien and loads it into the geoscrub db |
Also available in: Unified diff
Added notes on running biengeo scripts to README.