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Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11620 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11456 about 11 years Aaron Marcuse-Kubitza bugfix: bin/with_all: @inputs default value: us...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11591 about 11 years Aaron Marcuse-Kubitza derived/biengeo/load-geoscrub-input.sh: allow t...
  exports 11599 about 11 years Aaron Marcuse-Kubitza exports/2013-7-10.Naia.range_limiting_factors.c...
  inputs 11633 about 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: ValidMatchedTaxon: syn...
  lib 11624 about 11 years Aaron Marcuse-Kubitza bugfix: lib/runscripts/file.pg.sql.run: export_...
  mappings 11513 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11596 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11623 about 11 years Aaron Marcuse-Kubitza bugfix: schemas/vegbien.sql: analytical_stem_vi...
  web 11403 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 12.7 KB 11150 about 11 years Aaron Marcuse-Kubitza /Makefile: mk_db: config/users.sql: unset ON_ER...
README.TXT 24.9 KB 11573 about 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: after import...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 511 Bytes 11590 about 11 years Aaron Marcuse-Kubitza /run: use new exports/geoscrub_input.csv.run
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
11633 11/10/2013 03:38 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: ValidMatchedTaxon: synced to MatchedTaxon
11632 11/10/2013 03:22 PM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: scrubbed_taxon_name_with_author: renamed to scrubbed_unique_taxon_name because this also contains the family, and is therefore different from just the taxon name with author
11631 11/10/2013 01:50 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: MatchedTaxon: added scrubbed_taxon_name_with_author
11630 11/10/2013 01:23 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: removed Is_homonym, since this did not take into account the never_homonym status (when the author disambiguates) or the ability of a non-homonym at a lower rank to override a homonym at a higher rank. taking these into account just produces the value of is_valid_match.
11629 11/10/2013 01:19 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: removed Is_plant, since this functionality is now provided by is_valid_match. note that whether a name is a plant is not meaningful for TNRS, because it can match only plant names (thus a "non-plant" is actually a non-match).
11628 11/10/2013 01:06 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: added scrubbed_taxon_name_with_author derived column, which uses the matched name when an accepted name is not available
11627 11/10/2013 09:44 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: removed no longer used Max_score. use is_valid_match to determine validity instead.
11626 11/10/2013 12:09 AM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/file.pg.sql.run: export_(): exclude Source and related tables so that these will be re-created by the staging tables installation instead, ensuring that they are always in sync with the Source/ subdir
11625 11/10/2013 12:08 AM Aaron Marcuse-Kubitza

inputs/.TNRS/data.sql: updated for new derived columns
11624 11/10/2013 12:04 AM Aaron Marcuse-Kubitza

bugfix: lib/runscripts/file.pg.sql.run: export_(): exclude Source and related tables so that these will be re-created by the staging tables installation instead, ensuring that they are always in sync with the Source/ subdir

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