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1
--
2
-- PostgreSQL database dump
3
--
4

    
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SET statement_timeout = 0;
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SET client_encoding = 'UTF8';
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SET standard_conforming_strings = on;
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SET check_function_bodies = false;
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SET client_min_messages = warning;
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11
--
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-- Name: TNRS; Type: SCHEMA; Schema: -; Owner: -
13
--
14

    
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--CREATE SCHEMA "TNRS";
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17

    
18
--
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-- Name: SCHEMA "TNRS"; Type: COMMENT; Schema: -; Owner: -
20
--
21

    
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COMMENT ON SCHEMA "TNRS" IS 'IMPORTANT: when changing this schema, you must also make the same changes on vegbiendev:
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on vegbiendev:
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# back up existing TNRS schema (in case of an accidental incorrect change):
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$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
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$ svn up
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$ svn di
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# make the changes shown in the diff
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## to change column types:
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SELECT util.set_col_types(''"TNRS".tnrs'', ARRAY[
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  (''col'', ''new_type'')
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]::util.col_cast[]); -- runtime: 9 min ("531282 ms")
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$ rm=1 inputs/.TNRS/schema.sql.run
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# repeat until `svn di` shows no diff
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# back up new TNRS schema:
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$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")';
37

    
38

    
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SET search_path = "TNRS", pg_catalog;
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41
--
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-- Name: batch__fill(); Type: FUNCTION; Schema: TNRS; Owner: -
43
--
44

    
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CREATE FUNCTION batch__fill() RETURNS trigger
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    LANGUAGE plpgsql
47
    AS $$
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BEGIN
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	new.id_by_time = new.time_submitted;
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	new.id = COALESCE(new.id, new.id_by_time);
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	RETURN new;
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END;
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$$;
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55

    
56
--
57
-- Name: family_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: -
58
--
59

    
60
CREATE FUNCTION family_is_homonym(family text) RETURNS boolean
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    LANGUAGE sql STABLE STRICT
62
    AS $_$
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SELECT EXISTS(SELECT * FROM "IRMNG".family_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
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$_$;
65

    
66

    
67
--
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-- Name: genus_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: -
69
--
70

    
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CREATE FUNCTION genus_is_homonym(genus text) RETURNS boolean
72
    LANGUAGE sql STABLE STRICT
73
    AS $_$
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SELECT EXISTS(SELECT * FROM "IRMNG".genus_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
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$_$;
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77

    
78
--
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-- Name: tnrs_populate_fields(); Type: FUNCTION; Schema: TNRS; Owner: -
80
--
81

    
82
CREATE FUNCTION tnrs_populate_fields() RETURNS trigger
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    LANGUAGE plpgsql
84
    AS $$
85
DECLARE
86
	"Specific_epithet_is_plant" boolean :=
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		(CASE
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		WHEN   new."Infraspecific_epithet_matched"	 IS NOT NULL
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			OR new."Infraspecific_epithet_2_matched" IS NOT NULL
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			OR new."Specific_epithet_score" >= 0.9 -- fuzzy match
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			THEN true
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		ELSE NULL -- ambiguous
93
		END);
94
	never_homonym boolean = COALESCE(new."Author_score" >= 0.6, false);
95
		-- author disambiguates
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	family_is_homonym boolean = NOT never_homonym
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		AND "TNRS".family_is_homonym(new."Family_matched");
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	genus_is_homonym  boolean = NOT never_homonym
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		AND "TNRS".genus_is_homonym(new."Genus_matched");
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	matched_taxon_name_with_author text = NULLIF(concat_ws(' '
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		, NULLIF(NULLIF(new."Name_matched_accepted_family", 'Unknown'),
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			new."Name_matched")
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		, NULLIF(new."Name_matched", 'No suitable matches found.')
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		, new."Name_matched_author"
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		), '');
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BEGIN
107
	new."Accepted_scientific_name" = NULLIF(concat_ws(' '
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		, NULLIF(NULLIF(new."Accepted_name_family", 'Unknown'),
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			new."Accepted_name")
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		, new."Accepted_name"
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		, new."Accepted_name_author"
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		), '');
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	/* exclude homonyms because these are not valid matches (i.e. TNRS provides
114
	a name, but the name is not meaningful because it is not unambiguous). */
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	new.is_valid_match = COALESCE(CASE
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		WHEN new."Family_score" = 1 AND NOT family_is_homonym -- exact match
117
			THEN true
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		ELSE -- consider genus
119
			(CASE
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			WHEN new."Genus_score" =  1	   -- exact match
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				THEN
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				(CASE
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				WHEN NOT genus_is_homonym THEN true
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				ELSE "Specific_epithet_is_plant"
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				END)
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			WHEN new."Genus_score" >= 0.85 -- fuzzy match
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				THEN "Specific_epithet_is_plant"
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			ELSE NULL -- ambiguous
129
			END)
130
		END, false);
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	new.scrubbed_unique_taxon_name = COALESCE(
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		new."Accepted_scientific_name", matched_taxon_name_with_author);
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	RETURN new;
135
END;
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$$;
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--
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-- Name: FUNCTION tnrs_populate_fields(); Type: COMMENT; Schema: TNRS; Owner: -
141
--
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COMMENT ON FUNCTION tnrs_populate_fields() IS 'IMPORTANT: when changing this function, you must regenerate the derived cols:
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UPDATE "TNRS".tnrs SET "Name_submitted" = "Name_submitted"
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runtime: 25 min ("5363526 rows affected, 1351907 ms execution time")
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VACUUM ANALYZE "TNRS".tnrs -- to remove previous rows
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runtime: 1.5 min ("92633 ms")';
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SET default_tablespace = '';
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SET default_with_oids = false;
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--
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-- Name: tnrs; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
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--
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CREATE TABLE tnrs (
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    batch text DEFAULT now() NOT NULL,
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    "Name_number" integer NOT NULL,
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    "Name_submitted" text NOT NULL,
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    "Overall_score" double precision,
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    "Name_matched" text,
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    "Name_matched_rank" text,
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    "Name_score" double precision,
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    "Name_matched_author" text,
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    "Name_matched_url" text,
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    "Author_matched" text,
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    "Author_score" double precision,
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    "Family_matched" text,
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    "Family_score" double precision,
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    "Name_matched_accepted_family" text,
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    "Genus_matched" text,
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    "Genus_score" double precision,
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    "Specific_epithet_matched" text,
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    "Specific_epithet_score" double precision,
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    "Infraspecific_rank" text,
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    "Infraspecific_epithet_matched" text,
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    "Infraspecific_epithet_score" double precision,
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    "Infraspecific_rank_2" text,
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    "Infraspecific_epithet_2_matched" text,
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    "Infraspecific_epithet_2_score" double precision,
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    "Annotations" text,
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    "Unmatched_terms" text,
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    "Taxonomic_status" text,
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    "Accepted_name" text,
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    "Accepted_name_author" text,
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    "Accepted_name_rank" text,
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    "Accepted_name_url" text,
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    "Accepted_name_species" text,
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    "Accepted_name_family" text,
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    "Selected" text,
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    "Source" text,
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    "Warnings" text,
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    "Accepted_name_lsid" text,
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    "Accepted_scientific_name" text,
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    is_valid_match boolean NOT NULL,
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    scrubbed_unique_taxon_name text
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);
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--
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-- Name: TABLE tnrs; Type: COMMENT; Schema: TNRS; Owner: -
204
--
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COMMENT ON TABLE tnrs IS 'IMPORTANT: when changing this table''s schema, you may need to re-run TNRS:
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$ inputs/.TNRS/data.sql.run refresh';
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--
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-- Name: AcceptedTaxon; Type: VIEW; Schema: TNRS; Owner: -
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--
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CREATE VIEW "AcceptedTaxon" AS
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    SELECT tnrs.batch AS "*Accepted_name.batch", tnrs."Name_submitted" AS "acceptedScientificName", tnrs."Genus_matched" AS "acceptedGenus", tnrs."Specific_epithet_matched" AS "acceptedSpecificEpithet", tnrs."Infraspecific_epithet_matched" AS "acceptedInfraspecificEpithet", tnrs."Taxonomic_status" AS "acceptedTaxonomicStatus", tnrs."Selected" AS "*Accepted_name.Selected", tnrs."Source" AS "*Accepted_name.Source", tnrs."Warnings" AS "*Accepted_name.Warnings", tnrs."Accepted_name_lsid" AS "*Accepted_name.Accepted_name_lsid" FROM tnrs;
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--
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-- Name: MatchedTaxon; Type: VIEW; Schema: TNRS; Owner: -
220
--
221

    
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CREATE VIEW "MatchedTaxon" AS
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    SELECT tnrs.batch AS "*Name_matched.batch", tnrs."Name_submitted" AS "concatenatedScientificName", tnrs."Name_matched" AS "matchedTaxonName", tnrs."Name_matched_rank" AS "matchedTaxonRank", tnrs."Name_score" AS "*Name_matched.Name_score", tnrs."Name_matched_author" AS "matchedScientificNameAuthorship", tnrs."Name_matched_url" AS "matchedScientificNameID", tnrs."Author_score" AS "*Name_matched.Author_score", tnrs."Family_score" AS "matchedFamilyConfidence_fraction", COALESCE(tnrs."Name_matched_accepted_family", tnrs."Accepted_name_family") AS "matchedFamily", tnrs."Genus_matched" AS "matchedGenus", tnrs."Genus_score" AS "matchedGenusConfidence_fraction", tnrs."Specific_epithet_matched" AS "matchedSpecificEpithet", tnrs."Specific_epithet_score" AS "matchedSpeciesConfidence_fraction", tnrs."Infraspecific_epithet_matched" AS "matchedInfraspecificEpithet", tnrs."Infraspecific_epithet_score" AS "*Name_matched.Infraspecific_epithet_score", tnrs."Annotations" AS "identificationQualifier", tnrs."Unmatched_terms" AS "morphospeciesSuffix", tnrs."Taxonomic_status" AS "taxonomicStatus", tnrs."Accepted_name" AS "acceptedTaxonName", tnrs."Accepted_name_author" AS "acceptedScientificNameAuthorship", tnrs."Accepted_name_rank" AS "acceptedTaxonRank", tnrs."Accepted_name_url" AS "acceptedScientificNameID", tnrs."Accepted_name_species" AS "*Name_matched.Accepted_name_species", tnrs."Accepted_name_family" AS "acceptedFamily", tnrs."Selected" AS "*Name_matched.Selected", tnrs."Source" AS "*Name_matched.Source", tnrs."Warnings" AS "*Name_matched.Warnings", tnrs."Accepted_name_lsid" AS "*Name_matched.Accepted_name_lsid", tnrs."Accepted_scientific_name" AS "acceptedScientificName", tnrs.is_valid_match AS taxon_scrub__is_valid_match, tnrs.scrubbed_unique_taxon_name FROM tnrs;
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--
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-- Name: ValidMatchedTaxon; Type: VIEW; Schema: TNRS; Owner: -
228
--
229

    
230
CREATE VIEW "ValidMatchedTaxon" AS
231
    SELECT "MatchedTaxon"."*Name_matched.batch", "MatchedTaxon"."concatenatedScientificName", "MatchedTaxon"."matchedTaxonName", "MatchedTaxon"."matchedTaxonRank", "MatchedTaxon"."*Name_matched.Name_score", "MatchedTaxon"."matchedScientificNameAuthorship", "MatchedTaxon"."matchedScientificNameID", "MatchedTaxon"."*Name_matched.Author_score", "MatchedTaxon"."matchedFamilyConfidence_fraction", "MatchedTaxon"."matchedFamily", "MatchedTaxon"."matchedGenus", "MatchedTaxon"."matchedGenusConfidence_fraction", "MatchedTaxon"."matchedSpecificEpithet", "MatchedTaxon"."matchedSpeciesConfidence_fraction", "MatchedTaxon"."matchedInfraspecificEpithet", "MatchedTaxon"."*Name_matched.Infraspecific_epithet_score", "MatchedTaxon"."identificationQualifier", "MatchedTaxon"."morphospeciesSuffix", "MatchedTaxon"."taxonomicStatus", "MatchedTaxon"."acceptedTaxonName", "MatchedTaxon"."acceptedScientificNameAuthorship", "MatchedTaxon"."acceptedTaxonRank", "MatchedTaxon"."acceptedScientificNameID", "MatchedTaxon"."*Name_matched.Accepted_name_species", "MatchedTaxon"."acceptedFamily", "MatchedTaxon"."*Name_matched.Selected", "MatchedTaxon"."*Name_matched.Source", "MatchedTaxon"."*Name_matched.Warnings", "MatchedTaxon"."*Name_matched.Accepted_name_lsid", "MatchedTaxon"."acceptedScientificName", "MatchedTaxon".taxon_scrub__is_valid_match, "MatchedTaxon".scrubbed_unique_taxon_name FROM "MatchedTaxon" WHERE "MatchedTaxon".taxon_scrub__is_valid_match;
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--
235
-- Name: VIEW "ValidMatchedTaxon"; Type: COMMENT; Schema: TNRS; Owner: -
236
--
237

    
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COMMENT ON VIEW "ValidMatchedTaxon" IS 'to update, use * as the column list';
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240

    
241
--
242
-- Name: ScrubbedTaxon; Type: VIEW; Schema: TNRS; Owner: -
243
--
244

    
245
CREATE VIEW "ScrubbedTaxon" AS
246
    SELECT "ValidMatchedTaxon"."acceptedScientificName", "ValidMatchedTaxon"."*Name_matched.batch", "ValidMatchedTaxon"."concatenatedScientificName", "ValidMatchedTaxon"."matchedTaxonName", "ValidMatchedTaxon"."matchedTaxonRank", "ValidMatchedTaxon"."*Name_matched.Name_score", "ValidMatchedTaxon"."matchedScientificNameAuthorship", "ValidMatchedTaxon"."matchedScientificNameID", "ValidMatchedTaxon"."*Name_matched.Author_score", "ValidMatchedTaxon"."matchedFamilyConfidence_fraction", "ValidMatchedTaxon"."matchedFamily", "ValidMatchedTaxon"."matchedGenus", "ValidMatchedTaxon"."matchedGenusConfidence_fraction", "ValidMatchedTaxon"."matchedSpecificEpithet", "ValidMatchedTaxon"."matchedSpeciesConfidence_fraction", "ValidMatchedTaxon"."matchedInfraspecificEpithet", "ValidMatchedTaxon"."*Name_matched.Infraspecific_epithet_score", "ValidMatchedTaxon"."identificationQualifier", "ValidMatchedTaxon"."morphospeciesSuffix", "ValidMatchedTaxon"."taxonomicStatus", "ValidMatchedTaxon"."acceptedTaxonName", "ValidMatchedTaxon"."acceptedScientificNameAuthorship", "ValidMatchedTaxon"."acceptedTaxonRank", "ValidMatchedTaxon"."acceptedScientificNameID", "ValidMatchedTaxon"."*Name_matched.Accepted_name_species", "ValidMatchedTaxon"."acceptedFamily", "ValidMatchedTaxon"."*Name_matched.Selected", "ValidMatchedTaxon"."*Name_matched.Source", "ValidMatchedTaxon"."*Name_matched.Warnings", "ValidMatchedTaxon"."*Name_matched.Accepted_name_lsid", "ValidMatchedTaxon".taxon_scrub__is_valid_match, "ValidMatchedTaxon".scrubbed_unique_taxon_name, "AcceptedTaxon"."*Accepted_name.batch", "AcceptedTaxon"."acceptedGenus", "AcceptedTaxon"."acceptedSpecificEpithet", "AcceptedTaxon"."acceptedInfraspecificEpithet", "AcceptedTaxon"."acceptedTaxonomicStatus", "AcceptedTaxon"."*Accepted_name.Selected", "AcceptedTaxon"."*Accepted_name.Source", "AcceptedTaxon"."*Accepted_name.Warnings", "AcceptedTaxon"."*Accepted_name.Accepted_name_lsid" FROM ("ValidMatchedTaxon" NATURAL LEFT JOIN "AcceptedTaxon");
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249
--
250
-- Name: batch; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
251
--
252

    
253
CREATE TABLE batch (
254
    id text NOT NULL,
255
    id_by_time text,
256
    time_submitted timestamp with time zone DEFAULT now(),
257
    client_version text
258
);
259

    
260

    
261
--
262
-- Name: batch_download_settings; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
263
--
264

    
265
CREATE TABLE batch_download_settings (
266
    id text NOT NULL,
267
    "E-mail" text,
268
    "Id" text,
269
    "Job type" text,
270
    "Contains Id" boolean,
271
    "Start time" text,
272
    "Finish time" text,
273
    "TNRS version" text,
274
    "Sources selected" text,
275
    "Match threshold" double precision,
276
    "Classification" text,
277
    "Allow partial matches?" boolean,
278
    "Sort by source" boolean,
279
    "Constrain by higher taxonomy" boolean
280
);
281

    
282

    
283
--
284
-- Name: TABLE batch_download_settings; Type: COMMENT; Schema: TNRS; Owner: -
285
--
286

    
287
COMMENT ON TABLE batch_download_settings IS 'stores data from http://tnrs.iplantcollaborative.org/TNRSapp.html > Submit List > results section > Download settings > settings.txt';
288

    
289

    
290
--
291
-- Name: client_version; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: 
292
--
293

    
294
CREATE TABLE client_version (
295
    id text NOT NULL,
296
    global_rev integer NOT NULL,
297
    "/lib/tnrs.py rev" integer,
298
    "/bin/tnrs_db rev" integer
299
);
300

    
301

    
302
--
303
-- Name: TABLE client_version; Type: COMMENT; Schema: TNRS; Owner: -
304
--
305

    
306
COMMENT ON TABLE client_version IS 'contains svn revisions';
307

    
308

    
309
--
310
-- Name: COLUMN client_version.global_rev; Type: COMMENT; Schema: TNRS; Owner: -
311
--
312

    
313
COMMENT ON COLUMN client_version.global_rev IS 'from `svn info .` > Last Changed Rev';
314

    
315

    
316
--
317
-- Name: COLUMN client_version."/lib/tnrs.py rev"; Type: COMMENT; Schema: TNRS; Owner: -
318
--
319

    
320
COMMENT ON COLUMN client_version."/lib/tnrs.py rev" IS 'from `svn info lib/tnrs.py` > Last Changed Rev';
321

    
322

    
323
--
324
-- Name: COLUMN client_version."/bin/tnrs_db rev"; Type: COMMENT; Schema: TNRS; Owner: -
325
--
326

    
327
COMMENT ON COLUMN client_version."/bin/tnrs_db rev" IS 'from `svn info bin/tnrs_db` > Last Changed Rev';
328

    
329

    
330
--
331
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: VIEW; Schema: TNRS; Owner: -
332
--
333

    
334
CREATE VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" AS
335
    SELECT tnrs."Name_submitted" AS scrubbed_unique_taxon_name, tnrs."Name_matched_rank" AS scrubbed_taxon_rank, tnrs."Name_matched_accepted_family" AS scrubbed_family, tnrs."Genus_matched" AS scrubbed_genus, tnrs."Specific_epithet_matched" AS scrubbed_specific_epithet, tnrs."Infraspecific_rank" AS scrubbed_infraspecific_rank, tnrs."Infraspecific_epithet_matched" AS scrubbed_infraspecific_epithet, tnrs."Name_matched_author" AS scrubbed_author, tnrs."Name_matched" AS scrubbed_taxon_name_no_author FROM tnrs;
336

    
337

    
338
--
339
-- Name: taxon_scrub; Type: VIEW; Schema: TNRS; Owner: -
340
--
341

    
342
CREATE VIEW taxon_scrub AS
343
    SELECT "ValidMatchedTaxon".scrubbed_unique_taxon_name, "ValidMatchedTaxon"."*Name_matched.batch", "ValidMatchedTaxon"."concatenatedScientificName", "ValidMatchedTaxon"."matchedTaxonName", "ValidMatchedTaxon"."matchedTaxonRank", "ValidMatchedTaxon"."*Name_matched.Name_score", "ValidMatchedTaxon"."matchedScientificNameAuthorship", "ValidMatchedTaxon"."matchedScientificNameID", "ValidMatchedTaxon"."*Name_matched.Author_score", "ValidMatchedTaxon"."matchedFamilyConfidence_fraction", "ValidMatchedTaxon"."matchedFamily", "ValidMatchedTaxon"."matchedGenus", "ValidMatchedTaxon"."matchedGenusConfidence_fraction", "ValidMatchedTaxon"."matchedSpecificEpithet", "ValidMatchedTaxon"."matchedSpeciesConfidence_fraction", "ValidMatchedTaxon"."matchedInfraspecificEpithet", "ValidMatchedTaxon"."*Name_matched.Infraspecific_epithet_score", "ValidMatchedTaxon"."identificationQualifier", "ValidMatchedTaxon"."morphospeciesSuffix", "ValidMatchedTaxon"."taxonomicStatus", "ValidMatchedTaxon"."acceptedTaxonName", "ValidMatchedTaxon"."acceptedScientificNameAuthorship", "ValidMatchedTaxon"."acceptedTaxonRank", "ValidMatchedTaxon"."acceptedScientificNameID", "ValidMatchedTaxon"."*Name_matched.Accepted_name_species", "ValidMatchedTaxon"."acceptedFamily", "ValidMatchedTaxon"."*Name_matched.Selected", "ValidMatchedTaxon"."*Name_matched.Source", "ValidMatchedTaxon"."*Name_matched.Warnings", "ValidMatchedTaxon"."*Name_matched.Accepted_name_lsid", "ValidMatchedTaxon"."acceptedScientificName", "ValidMatchedTaxon".taxon_scrub__is_valid_match, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_family, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_genus, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_specific_epithet, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_rank, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_epithet, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_author, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_name_no_author FROM ("ValidMatchedTaxon" NATURAL LEFT JOIN "taxon_scrub.scrubbed_unique_taxon_name.*");
344

    
345

    
346
--
347
-- Name: VIEW taxon_scrub; Type: COMMENT; Schema: TNRS; Owner: -
348
--
349

    
350
COMMENT ON VIEW taxon_scrub IS 'to update, use * as the column list';
351

    
352

    
353
--
354
-- Name: batch_download_settings_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
355
--
356

    
357
ALTER TABLE ONLY batch_download_settings
358
    ADD CONSTRAINT batch_download_settings_pkey PRIMARY KEY (id);
359

    
360

    
361
--
362
-- Name: batch_id_by_time_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
363
--
364

    
365
ALTER TABLE ONLY batch
366
    ADD CONSTRAINT batch_id_by_time_key UNIQUE (id_by_time);
367

    
368

    
369
--
370
-- Name: batch_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
371
--
372

    
373
ALTER TABLE ONLY batch
374
    ADD CONSTRAINT batch_pkey PRIMARY KEY (id);
375

    
376

    
377
--
378
-- Name: client_version_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
379
--
380

    
381
ALTER TABLE ONLY client_version
382
    ADD CONSTRAINT client_version_pkey PRIMARY KEY (id);
383

    
384

    
385
--
386
-- Name: tnrs_Name_submitted_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
387
--
388

    
389
ALTER TABLE ONLY tnrs
390
    ADD CONSTRAINT "tnrs_Name_submitted_key" UNIQUE ("Name_submitted");
391

    
392

    
393
--
394
-- Name: tnrs_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: 
395
--
396

    
397
ALTER TABLE ONLY tnrs
398
    ADD CONSTRAINT tnrs_pkey PRIMARY KEY (batch, "Name_number");
399

    
400

    
401
--
402
-- Name: batch_client_version_idx; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: 
403
--
404

    
405
CREATE INDEX batch_client_version_idx ON batch USING btree (client_version);
406

    
407

    
408
--
409
-- Name: tnrs__valid_match; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: 
410
--
411

    
412
CREATE UNIQUE INDEX tnrs__valid_match ON tnrs USING btree ("Name_submitted") WHERE is_valid_match;
413

    
414

    
415
--
416
-- Name: batch__fill; Type: TRIGGER; Schema: TNRS; Owner: -
417
--
418

    
419
CREATE TRIGGER batch__fill BEFORE INSERT OR UPDATE ON batch FOR EACH ROW EXECUTE PROCEDURE batch__fill();
420

    
421

    
422
--
423
-- Name: tnrs_populate_fields; Type: TRIGGER; Schema: TNRS; Owner: -
424
--
425

    
426
CREATE TRIGGER tnrs_populate_fields BEFORE INSERT OR UPDATE ON tnrs FOR EACH ROW EXECUTE PROCEDURE tnrs_populate_fields();
427

    
428

    
429
--
430
-- Name: batch_client_version_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
431
--
432

    
433
ALTER TABLE ONLY batch
434
    ADD CONSTRAINT batch_client_version_fkey FOREIGN KEY (client_version) REFERENCES client_version(id) ON UPDATE CASCADE ON DELETE CASCADE;
435

    
436

    
437
--
438
-- Name: batch_download_settings_id_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
439
--
440

    
441
ALTER TABLE ONLY batch_download_settings
442
    ADD CONSTRAINT batch_download_settings_id_fkey FOREIGN KEY (id) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
443

    
444

    
445
--
446
-- Name: tnrs_batch_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
447
--
448

    
449
ALTER TABLE ONLY tnrs
450
    ADD CONSTRAINT tnrs_batch_fkey FOREIGN KEY (batch) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
451

    
452

    
453
--
454
-- Name: TNRS; Type: ACL; Schema: -; Owner: -
455
--
456

    
457
REVOKE ALL ON SCHEMA "TNRS" FROM PUBLIC;
458
REVOKE ALL ON SCHEMA "TNRS" FROM bien;
459
GRANT ALL ON SCHEMA "TNRS" TO bien;
460
GRANT USAGE ON SCHEMA "TNRS" TO bien_read;
461

    
462

    
463
--
464
-- Name: tnrs; Type: ACL; Schema: TNRS; Owner: -
465
--
466

    
467
REVOKE ALL ON TABLE tnrs FROM PUBLIC;
468
REVOKE ALL ON TABLE tnrs FROM bien;
469
GRANT ALL ON TABLE tnrs TO bien;
470
GRANT SELECT ON TABLE tnrs TO bien_read;
471

    
472

    
473
--
474
-- PostgreSQL database dump complete
475
--
476

    
(8-8/10)