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Name Size Revision Age Author Comment
  BIEN2 10896 over 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11697 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11456 about 11 years Aaron Marcuse-Kubitza bugfix: bin/with_all: @inputs default value: us...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11591 about 11 years Aaron Marcuse-Kubitza derived/biengeo/load-geoscrub-input.sh: allow t...
  exports 11599 about 11 years Aaron Marcuse-Kubitza exports/2013-7-10.Naia.range_limiting_factors.c...
  inputs 11707 about 11 years Aaron Marcuse-Kubitza bugfix: inputs/CVS/stemCount_/map.csv: ensure t...
  lib 11665 about 11 years Aaron Marcuse-Kubitza bugfix: lib/Firefox_bookmarks.reformat.csv: rem...
  mappings 11513 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11701 about 11 years Aaron Marcuse-Kubitza added planning/legal/open-sourcing/request_to_o...
  schemas 11706 about 11 years Aaron Marcuse-Kubitza fix: schemas/vegbien.sql: taxon_trait_view: inc...
  web 11703 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 13.2 KB 11675 about 11 years Aaron Marcuse-Kubitza fix: /Makefile: $(macPostgresLibs): added libpq...
README.TXT 25.1 KB 11686 about 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: to backup files not in Tim...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 511 Bytes 11590 about 11 years Aaron Marcuse-Kubitza /run: use new exports/geoscrub_input.csv.run
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
11707 11/21/2013 08:26 AM Aaron Marcuse-Kubitza

bugfix: inputs/CVS/stemCount_/map.csv: ensure the aggregateoccurrence.sourceaccessioncode is always populated, because this is a required field when using sourceaccessioncodes. without it, the import will exclude rows which lack a value in this field because it cannot deduplicate on it for these rows, leading to the dropping of large numbers of occurrences. this shows up when comparing provider_count to the input table's row count, and produces the following error in the .errors table:...
11706 11/21/2013 07:40 AM Aaron Marcuse-Kubitza

fix: schemas/vegbien.sql: taxon_trait_view: include only TNRS-valid names
11705 11/21/2013 12:24 AM Aaron Marcuse-Kubitza

copyright scrub: inputs/: removed data provider-owned schema and documentation files, which are not BIEN copyright and should not be part of what is submitted for open-sourcing. these files will remain accessible via the web interface (fs.vegpath.org), but will not be in the repository.
11704 11/21/2013 12:02 AM Aaron Marcuse-Kubitza

added inputs/TEAM/_src/data_cart.tsv, containing the content extracted from data_cart.maff
11703 11/20/2013 11:38 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. BIEN: open-sourcing: added UArizona and iPlant IP policies, which are relevant to Brad's numerous documentation and schema-modeling contributions in our repository (most done while he was an iPlant employee).
11702 11/20/2013 10:49 PM Aaron Marcuse-Kubitza

removed inputs/TEAM/_src/data_cart.pdf since this does not contain all the info in data_cart.maff
11701 11/20/2013 01:21 PM Aaron Marcuse-Kubitza

added planning/legal/open-sourcing/request_to_open_source_software.orig.docx.url
11700 11/20/2013 01:18 PM Aaron Marcuse-Kubitza

added planning/legal/open-sourcing/, which will contain the "request to open source software" form (this cannot be under version control due to copyright limitations stated in the form)
11699 11/19/2013 09:21 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. BIEN: open-sourcing: added potential licenses we could use (public domain/CC0, BSD, GNU Verbatim Copying License, not CC-BY because incompatible w/ GPL).
11698 11/19/2013 08:31 PM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. BIEN: added links related to open-sourcing it, including the "Request to Open Source Software" form, the funding sources that need to be included in it, and part of the delegation of authority chain (from the UC Regents) that authorizes the open-sourcing.

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