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Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11697 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11456 about 11 years Aaron Marcuse-Kubitza bugfix: bin/with_all: @inputs default value: us...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11783 about 11 years Aaron Marcuse-Kubitza derived/biengeo/README.txt: updated geoscrub.sh...
  exports 11599 about 11 years Aaron Marcuse-Kubitza exports/2013-7-10.Naia.range_limiting_factors.c...
  inputs 11782 about 11 years Aaron Marcuse-Kubitza inputs/.geoscrub/geoscrub_output/geoscrub.csv.r...
  lib 11784 about 11 years Aaron Marcuse-Kubitza lib/sh/util.sh: import_vars: don't overwrite va...
  mappings 11513 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11780 about 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: reschedule...
  schemas 11736 about 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: collected_dates: documente...
  web 11737 about 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 13.2 KB 11675 about 11 years Aaron Marcuse-Kubitza fix: /Makefile: $(macPostgresLibs): added libpq...
README.TXT 25 KB 11728 about 11 years Aaron Marcuse-Kubitza /README.TXT: Full database import: verifying im...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
run 511 Bytes 11590 about 11 years Aaron Marcuse-Kubitza /run: use new exports/geoscrub_input.csv.run
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
11784 11/26/2013 10:58 PM Aaron Marcuse-Kubitza

lib/sh/util.sh: import_vars: don't overwrite vars that are already defined, to allow the caller to specify their own values for the vars to create. this requires callers that rely on the overwriting functionality to reverse the order in which they run use_* commands, so that the higher-precedence use_* is applied first and the other one as the default values for the first.
11783 11/26/2013 10:03 PM Aaron Marcuse-Kubitza

derived/biengeo/README.txt: updated geoscrub.sh runtime
11782 11/26/2013 09:57 PM Aaron Marcuse-Kubitza

inputs/.geoscrub/geoscrub_output/geoscrub.csv.run: make(): derived/biengeo/geoscrub.sh: documented runtime (2.5 h)
11781 11/26/2013 09:45 PM Aaron Marcuse-Kubitza

inputs/.geoscrub/geoscrub_output/geoscrub.csv.run: don't connect to DB as the root user, because this is not needed now that the geoscrub schema is owned by the bien user. this avoids a sudo password prompt at the end of the geoscrubbing run.
11780 11/26/2013 07:38 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: rescheduled tasks
11779 11/26/2013 06:51 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: rescheduled tasks
11778 11/26/2013 06:41 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: updated for progress
11777 11/26/2013 02:23 PM Aaron Marcuse-Kubitza

bugfix: inputs/input.Makefile: $(import): except in a full-database import, errexit so that the import will stop on an error and not let it scroll by
11776 11/26/2013 01:55 PM Aaron Marcuse-Kubitza

added inputs/CVS/^taxon_observation.**.sample/, used for the extract. note that the column list is slightly different than for VegBank.
11775 11/26/2013 01:42 PM Aaron Marcuse-Kubitza

inputs/CVS/taxonObservation_/map.csv: removed taxonObservation_-- prefix from terms that do not need to be table-specific (like for VegBank)

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