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Name Size Revision Age Author Comment
  BIEN2 10896 about 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11697 about 11 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 11456 about 11 years Aaron Marcuse-Kubitza bugfix: bin/with_all: @inputs default value: us...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11783 about 11 years Aaron Marcuse-Kubitza derived/biengeo/README.txt: updated geoscrub.sh...
  exports 11599 about 11 years Aaron Marcuse-Kubitza exports/2013-7-10.Naia.range_limiting_factors.c...
  inputs 11799 almost 11 years Aaron Marcuse-Kubitza fix: inputs/CVS/taxon_observation.**/map.csv: o...
  lib 11784 about 11 years Aaron Marcuse-Kubitza lib/sh/util.sh: import_vars: don't overwrite va...
  mappings 11513 about 11 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11791 almost 11 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11797 almost 11 years Aaron Marcuse-Kubitza schemas/postgresql.conf: work_mem: documented t...
  web 11798 almost 11 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 over 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 over 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 13.2 KB 11675 about 11 years Aaron Marcuse-Kubitza fix: /Makefile: $(macPostgresLibs): added libpq...
README.TXT 25.1 KB 11800 almost 11 years Aaron Marcuse-Kubitza bugfix: /README.TXT: Full database import: To r...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 80.2 KB 11788 about 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...
run 511 Bytes 11590 about 11 years Aaron Marcuse-Kubitza /run: use new exports/geoscrub_input.csv.run
unmapped_terms.csv 33 KB 11788 about 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...

Latest revisions

# Date Author Comment
11800 12/03/2013 06:27 AM Aaron Marcuse-Kubitza

bugfix: /README.TXT: Full database import: To restart an aborted import for a specific table: run the two commands in errexit mode so that the datasource does not incorrectly have the temp suffix removed if the import command exited with an error
11799 12/03/2013 05:19 AM Aaron Marcuse-Kubitza

fix: inputs/CVS/taxon_observation.**/map.csv: omit authorPlantName because it is not specific to the taxonInterpretation row (this is in a separate taxonInterpretation for the original determination instead)
11798 12/03/2013 04:59 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. PostgreSQL: added links for troubleshooting out-of-memory errors, which show up (cryptically) as "The database system is in recovery mode" errors in processes running at the time the out-of-memory condition occurred.
11797 12/03/2013 02:31 AM Aaron Marcuse-Kubitza

schemas/postgresql.conf: work_mem: documented that this seemingly small # is multiplied by max_connections, i.e. 256 MB * 100 = 26 GB, which approaches total memory (32 GB)
11796 12/02/2013 02:46 PM Aaron Marcuse-Kubitza

fix: inputs/CVS/plot_/map.csv: PARENT_ID: remapped to UNUSED, to clarify that subplots are not implemented through this field
11795 11/27/2013 11:16 PM Aaron Marcuse-Kubitza

bugfix: /README.TXT: Full database import: To restart an aborted import for a specific table: added command to remove the temp suffix from the source table entry, which is not automatic for importing a specific table (only for importing the entire datasource, at the end of which the datasource is considered completely imported and ready to overwrite any previous import)
11794 11/27/2013 11:04 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: scrub: clarified that using & (background process) also ignores TNRS errors (the primary purpose of & , of course, is to run asynchronously)
11793 11/27/2013 10:42 PM Aaron Marcuse-Kubitza

bugfix: schemas/Makefile: $(confirmRmPublicSchema): only prompt to delete the schema if it actually exists. this avoids prompting to remove a non-existent schema at the beginning of bin/import_all, which requires user attention. since bin/import_all is often run with a delayed start (e.g. to wait for a staging table reinstall to complete), the user may not be at the terminal when this message is displayed, and without this fix, the import would be prevented from running until they return.
11792 11/27/2013 09:24 PM Aaron Marcuse-Kubitza

inputs/.geoscrub/geoscrub_output/run: import() runtime: added starscream runtime (20 min)
11791 11/27/2013 08:48 PM Aaron Marcuse-Kubitza

planning/timeline/timeline.2013.xls: updated for progress

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