#!/bin/bash -e

# Imports all inputs at once

set -o errexit -o pipefail # errexit since may be called from shell

if test "$1" = .; then set --; fi # was .-included without args, so $@ is wrong

main()

{

    local self="${BASH_SOURCE[0]}"

    local selfDir="$(dirname -- "$self")"

    pushd "$selfDir/.."

    if test "${BASH_LINENO[1]}" = 0; then # was run without initial "."

        echo "usage: [version=...] [inputs=(inputs/src/ ...)]; . $self \

[vars...] (note initial \".\")"|fold -s >&2

        return 2

    fi

    : ${version=$(make -s version)}

    local by_col=${by_col-1} full_import=1

    export version by_col full_import

    # remove any leftover TNRS lockfile. usually, the PID in it would not exist,

    # but sometimes it now refers to an active process which blocks tnrs.make.

    "rm" -f inputs/.TNRS/tnrs/tnrs.make.lock

    make schemas/$version/reinstall

    local hidden_srcs=1; . "$selfDir/with_all" Source/import by_col=1 "$@"

        # note that this isn't affected by $import_source

    wait # wait for asynchronous commands

    unset hidden_srcs

    local import_source= # Source tables have already been imported

    export import_source # must come after local

    # publish datasources that won't be published by `make .../import`

    make inputs/.TNRS/publish

    make inputs/.geoscrub/publish

    make inputs/.herbaria/import "$@" &

    sleep 5 # wait for make commands to scroll by

    make inputs/.NCBI/import by_col=1 "$@"

    wait # wait for asynchronous commands

    . "$selfDir/with_all" import_scrub "$@" # uses $by_col

    local jobs="$(jobs -p)"

    echo "import_scrub PIDs: $jobs" >&2

    bin/after_import $jobs &

    echo "after_import PID: $!" >&2

    . bin/disown_all

    popd

}

main "$@"