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Revision 11919

web/links/index.htm: updated to Firefox bookmarks. added links for fixing the "App Store is temporarily unavailable" error (turn on Spotlight) and modifying a running shell script (unlink it first).

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web/links/index.htm
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        <DT><A HREF="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Database_development" name="__https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Database_development" ADD_DATE="1318376026" ICON_URI="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715"><img width="16" height="16" src="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715" style="margin-right: 0.5em;"/>Wiki</A><a name="__Wiki" href="#__Wiki" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/To_Do" name="__https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/To_Do" ADD_DATE="1342214119" ICON_URI="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715"><img width="16" height="16" src="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715" style="margin-right: 0.5em;"/>To do</A><a name="__To do" href="#__To do" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="https://projects.nceas.ucsb.edu/nceas/projects/bien/issues?c[]=status&c[]=subject&c[]=assigned_to&c[]=updated_on&c[]=done_ratio&f[]=status_id&f[]=&group_by=&op[status_id]=o&per_page=100&set_filter=1&sort=id%3Adesc%2Cdone_ratio" name="__https://projects.nceas.ucsb.edu/nceas/projects/bien/issues?c[]=status&c[]=subject&c[]=assigned_to&c[]=updated_on&c[]=done_ratio&f[]=status_id&f[]=&group_by=&op[status_id]=o&per_page=100&set_filter=1&sort=id%3Adesc%2Cdone_ratio" ADD_DATE="1328841076" ICON_URI="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715"><img width="16" height="16" src="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715" style="margin-right: 0.5em;"/>Issues</A><a name="__Issues" href="#__Issues" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Datasource_validation_status" name="__https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Datasource_validation_status" ADD_DATE="1355767956" ICON_URI="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715"><img width="16" height="16" src="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715" style="margin-right: 0.5em;"/>srcs</A><a name="__srcs" href="#__srcs" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking_validation_status" name="__https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking_validation_status" ADD_DATE="1355767956" ICON_URI="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715"><img width="16" height="16" src="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715" style="margin-right: 0.5em;"/>srcs</A><a name="__srcs" href="#__srcs" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="https://docs.google.com/spreadsheet/ccc?key=0ArZXrTAXd-TYdDRRb2RxYi11TWZrQVh5bVdKOURCeFE" name="__https://docs.google.com/spreadsheet/ccc?key=0ArZXrTAXd-TYdDRRb2RxYi11TWZrQVh5bVdKOURCeFE" ADD_DATE="1387233673" ICON_URI="https://docs.google.com/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="https://docs.google.com/favicon.ico" style="margin-right: 0.5em;"/>pub</A><a name="__pub" href="#__pub" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Postgres_queries" name="__https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Postgres_queries" ADD_DATE="1369809099" ICON_URI="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715"><img width="16" height="16" src="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715" style="margin-right: 0.5em;"/>SQL</A><a name="__SQL" href="#__SQL" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore" name="__https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore" ADD_DATE="1354727779" ICON_URI="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715"><img width="16" height="16" src="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715" style="margin-right: 0.5em;"/>VegCore</A><a name="__VegCore" href="#__VegCore" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegBIEN_schema" name="__https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegBIEN_schema" ADD_DATE="1344469303" ICON_URI="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715"><img width="16" height="16" src="https://projects.nceas.ucsb.edu/nceas/favicon.ico?1347421715" style="margin-right: 0.5em;"/>VegBIEN</A><a name="__VegBIEN" href="#__VegBIEN" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="http://nimoy.nceas.ucsb.edu/phpmyadmin/" name="__http://nimoy.nceas.ucsb.edu/phpmyadmin/" ADD_DATE="1318544417" ICON_URI="http://nimoy.nceas.ucsb.edu/phpmyadmin/favicon.ico"><img width="16" height="16" src="http://nimoy.nceas.ucsb.edu/phpmyadmin/favicon.ico" style="margin-right: 0.5em;"/>nimoy</A><a name="__nimoy" href="#__nimoy" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="http://www.postgresql.org/docs/9.1/interactive/index.html" name="__http://www.postgresql.org/docs/9.1/interactive/index.html" ADD_DATE="1317673868" ICON_URI="http://www.postgresql.org/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.postgresql.org/favicon.ico" style="margin-right: 0.5em;"/>PostgreSQL</A><a name="__PostgreSQL" href="#__PostgreSQL" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="http://dev.mysql.com/doc/refman/5.5/en/" name="__http://dev.mysql.com/doc/refman/5.5/en/" ADD_DATE="1325720224" ICON_URI="http://dev.mysql.com/common/themes/sakila/favicon.ico"><img width="16" height="16" src="http://dev.mysql.com/common/themes/sakila/favicon.ico" style="margin-right: 0.5em;"/>MySQL</A><a name="__MySQL" href="#__MySQL" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="http://httpd.apache.org/docs/current/mod/mod_rewrite.html" name="__http://httpd.apache.org/docs/current/mod/mod_rewrite.html" ADD_DATE="1365613941" ICON_URI="http://httpd.apache.org/docs/current/images/favicon.ico"><img width="16" height="16" src="http://httpd.apache.org/docs/current/images/favicon.ico" style="margin-right: 0.5em;"/>mod_rewrite</A><a name="__mod_rewrite" href="#__mod_rewrite" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="http://httpd.apache.org/docs/current/mod/mod_rewrite.html" name="__http://httpd.apache.org/docs/current/mod/mod_rewrite.html" ADD_DATE="1365613941" ICON_URI="http://httpd.apache.org/docs/current/images/favicon.ico"><img width="16" height="16" src="http://httpd.apache.org/docs/current/images/favicon.ico" style="margin-right: 0.5em;"/>mod_...</A><a name="__mod_..." href="#__mod_..." style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="http://vegpath.org/" name="__http://vegpath.org/" ADD_DATE="1365044622" ICON_URI="http://vegpath.org/favicon.ico" LAST_CHARSET="windows-1252"><img width="16" height="16" src="http://vegpath.org/favicon.ico" style="margin-right: 0.5em;"/>VegPath</A><a name="__VegPath" href="#__VegPath" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="http://rs.tdwg.org/dwc/terms/" name="__http://rs.tdwg.org/dwc/terms/" ADD_DATE="1344350345"><img width="16" height="16" src="blank.gif" style="margin-right: 0.5em;"/>DwC</A><a name="__DwC" href="#__DwC" style="margin-left: 0.5em;">&para;</a>
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        <DT><A HREF="http://vegbank.org/vegbank/views/dba_tabledescription_index.jsp?view=index&entity=dba_tabledescription" name="__http://vegbank.org/vegbank/views/dba_tabledescription_index.jsp?view=index&entity=dba_tabledescription" ADD_DATE="1345855547" ICON_URI="http://vegbank.org/vegbank/images/vegbank_logo16x16.gif" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://vegbank.org/vegbank/images/vegbank_logo16x16.gif" style="margin-right: 0.5em;"/>VegBank</A><a name="__VegBank" href="#__VegBank" style="margin-left: 0.5em;">&para;</a>
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            <DT><A HREF="http://nimoy.nceas.ucsb.edu/" name="http://nimoy.nceas.ucsb.edu/" ADD_DATE="1317767785" LAST_CHARSET="ISO-8859-1"><img width="16" height="16" src="blank.gif" style="margin-right: 0.5em;"/>nimoy</A><a name="nimoy" href="#nimoy" style="margin-left: 0.5em;">&para;</a>
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            <DT><A HREF="http://nimoy.nceas.ucsb.edu/phppgadmin/" name="http://nimoy.nceas.ucsb.edu/phppgadmin/" ADD_DATE="1323382008" ICON_URI="http://nimoy.nceas.ucsb.edu/phppgadmin/images/themes/default/Introduction.png"><img width="16" height="16" src="http://nimoy.nceas.ucsb.edu/phppgadmin/images/themes/default/Introduction.png" style="margin-right: 0.5em;"/>nimoy phpPgAdmin</A><a name="nimoy phpPgAdmin" href="#nimoy phpPgAdmin" style="margin-left: 0.5em;">&para;</a>
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            <DT><A HREF="https://pods.iplantcollaborative.org/wiki/download/attachments/4528119/Regetz_ecoinfo_20110224_iPlant.pdf?version=1&modificationDate=1300742997000" name="https://pods.iplantcollaborative.org/wiki/download/attachments/4528119/Regetz_ecoinfo_20110224_iPlant.pdf?version=1&modificationDate=1300742997000" ADD_DATE="1317772963"><img width="16" height="16" src="blank.gif" style="margin-right: 0.5em;"/>Overview of NCEAS Computing and GIS Support</A><a name="Overview of NCEAS Computing and GIS Support" href="#Overview of NCEAS Computing and GIS Support" style="margin-left: 0.5em;">&para;</a>
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            <DT><A HREF="https://docs.google.com/spreadsheet/ccc?key=0ArZXrTAXd-TYdDRRb2RxYi11TWZrQVh5bVdKOURCeFE" name="https://docs.google.com/spreadsheet/ccc?key=0ArZXrTAXd-TYdDRRb2RxYi11TWZrQVh5bVdKOURCeFE" ADD_DATE="1387233654" ICON_URI="https://docs.google.com/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="https://docs.google.com/favicon.ico" style="margin-right: 0.5em;"/>publishable datasources</A><a name="publishable datasources" href="#publishable datasources" style="margin-left: 0.5em;">&para;</a>
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            <DT><A HREF="http://bien.nceas.ucsb.edu/bien/bien-database-summary-statistics/bien-2/sources/" name="http://bien.nceas.ucsb.edu/bien/bien-database-summary-statistics/bien-2/sources/" ADD_DATE="1353554924" LAST_CHARSET="UTF-8"><img width="16" height="16" src="blank.gif" style="margin-right: 0.5em;"/>Sources « Botanical Information and Ecology Network</A><a name="Sources « Botanical Information and Ecology Network" href="#Sources « Botanical Information and Ecology Network" style="margin-left: 0.5em;">&para;</a>
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            <DT><A HREF="http://starscream.nceas.ucsb.edu/~aaronmk/phppgadmin/" name="http://starscream.nceas.ucsb.edu/~aaronmk/phppgadmin/" ADD_DATE="1340929390" ICON_URI="http://starscream.nceas.ucsb.edu/~aaronmk/phppgadmin/images/themes/default/Favicon.ico"><img width="16" height="16" src="http://starscream.nceas.ucsb.edu/~aaronmk/phppgadmin/images/themes/default/Favicon.ico" style="margin-right: 0.5em;"/>starscream phpPgAdmin</A><a name="starscream phpPgAdmin" href="#starscream phpPgAdmin" style="margin-left: 0.5em;">&para;</a>
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            <DT><A HREF="http://tnrs.iplantcollaborative.org/TNRSapp.html" name="http://tnrs.iplantcollaborative.org/TNRSapp.html" ADD_DATE="1317772105" LAST_CHARSET="UTF-8"><img width="16" height="16" src="blank.gif" style="margin-right: 0.5em;"/>Taxonomic Name Resolution Service</A><a name="Taxonomic Name Resolution Service" href="#Taxonomic Name Resolution Service" style="margin-left: 0.5em;">&para;</a>
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&quot;Funding agencies are beginning to require data management plans as part of the proposal and evaluation process&quot;
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&quot;management and preservation costs may be considerable, depending on the nature of the project&quot;
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                <DT><A HREF="http://en.wikipedia.org/wiki/Derivative_Work" name="http://en.wikipedia.org/wiki/Derivative_Work" ADD_DATE="1387227571" ICON_URI="http://bits.wikimedia.org/favicon/wikipedia.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://bits.wikimedia.org/favicon/wikipedia.ico" style="margin-right: 0.5em;"/>Derivative work - Wikipedia, the free encyclopedia</A><a name="Derivative work - Wikipedia, the free encyclopedia" href="#Derivative work - Wikipedia, the free encyclopedia" style="margin-left: 0.5em;">&para;</a>
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<DD>&quot;A “derivative work” is a work based upon one or more preexisting works, such as a translation, musical arrangement, dramatization, fictionalization, motion picture version, sound recording, art reproduction, abridgment, condensation, or any other form in which a work may be recast, transformed, or adapted. A work consisting of editorial revisions, annotations, elaborations, or other modifications which, as a whole, represent an original work of authorship, is a “derivative work”.&quot;
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                <DT><A HREF="http://archive.mises.org/16451/lets-make-copyright-opt-out/" name="http://archive.mises.org/16451/lets-make-copyright-opt-out/" ADD_DATE="1384981301" ICON_URI="http://archive.mises.org/wp-content/themes/thesis_18/custom/images/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://archive.mises.org/wp-content/themes/thesis_18/custom/images/favicon.ico" style="margin-right: 0.5em;"/>Let’s Make Copyright Opt-OUT</A><a name="Let’s Make Copyright Opt-OUT" href="#Let’s Make Copyright Opt-OUT" style="margin-left: 0.5em;">&para;</a>
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<DD>page's description: If you oppose IP and don’t want a patent–just don’t apply. Unfortunately, someone else might independently invent the same thing, patent it, and shut you down, since your having invented it first, or independently invented it, is no defense. So, […]
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                                <DT><A HREF="http://www.postgresql.org/docs/8.3/static/functions-admin.html" name="http://www.postgresql.org/docs/8.3/static/functions-admin.html" ADD_DATE="1336443290" ICON_URI="http://www.postgresql.org/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.postgresql.org/favicon.ico" style="margin-right: 0.5em;"/>PostgreSQL: Documentation: Manuals: System Administration Functions</A><a name="PostgreSQL: Documentation: Manuals: System Administration Functions" href="#PostgreSQL: Documentation: Manuals: System Administration Functions" style="margin-left: 0.5em;">&para;</a>
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                                <DT><A HREF="http://www.postgresql.org/docs/8.1/static/manage-ag-templatedbs.html" name="http://www.postgresql.org/docs/8.1/static/manage-ag-templatedbs.html" ADD_DATE="1335056156" ICON_URI="http://www.postgresql.org/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.postgresql.org/favicon.ico" style="margin-right: 0.5em;"/>PostgreSQL: Documentation: Manuals: Template Databases</A><a name="PostgreSQL: Documentation: Manuals: Template Databases" href="#PostgreSQL: Documentation: Manuals: Template Databases" style="margin-left: 0.5em;">&para;</a>
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                                <DT><A HREF="http://www.postgresql.org/docs/current/static/queries-with.html" name="http://www.postgresql.org/docs/current/static/queries-with.html" ADD_DATE="1332635517" ICON_URI="http://www.postgresql.org/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.postgresql.org/favicon.ico" style="margin-right: 0.5em;"/>PostgreSQL: Documentation: Manuals: WITH Queries (Common Table Expressions)</A><a name="PostgreSQL: Documentation: Manuals: WITH Queries (Common Table Expressions)" href="#PostgreSQL: Documentation: Manuals: WITH Queries (Common Table Expressions)" style="margin-left: 0.5em;">&para;</a>
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                                <DT><A HREF="http://www.postgresql.org/docs/9.3/static/sql-createdomain.html" name="http://www.postgresql.org/docs/9.3/static/sql-createdomain.html" ADD_DATE="1386257057" ICON_URI="http://www.postgresql.org/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.postgresql.org/favicon.ico" style="margin-right: 0.5em;"/>PostgreSQL: Documentation: 9.3: CREATE DOMAIN</A><a name="PostgreSQL: Documentation: 9.3: CREATE DOMAIN" href="#PostgreSQL: Documentation: 9.3: CREATE DOMAIN" style="margin-left: 0.5em;">&para;</a>
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                            </DL><p>
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                            <DT><a name="from/to MySQL" href="#from/to MySQL"><H3 ADD_DATE="1360831701">from/to MySQL</H3></a>
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                            <DL><p>
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                </DL><p>
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                <DT><a name="Mac" href="#Mac"><H3 ADD_DATE="1361008732">Mac</H3></a>
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                <DL><p>
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                    <DT><a name="&quot;App Store is temporarily unavailable&quot; error" href="#&quot;App Store is temporarily unavailable&quot; error"><H3 ADD_DATE="1387234722">&quot;App Store is temporarily unavailable&quot; error</H3></a>
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                    <DL><p>
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                        <DT><A HREF="https://discussions.apple.com/message/24082309#24082309#24082309" name="https://discussions.apple.com/message/24082309#24082309#24082309" ADD_DATE="1387234841" ICON_URI="https://ssl.apple.com/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="https://ssl.apple.com/favicon.ico" style="margin-right: 0.5em;"/>*** Impossible to perform software updates: Apple Support Communities</A><a name="*** Impossible to perform software updates: Apple Support Communities" href="#*** Impossible to perform software updates: Apple Support Communities" style="margin-left: 0.5em;">&para;</a>
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<DD>&quot;I had disabled Spotlight and although updates worked for many months, they stopped working. By re-enabling Spotlight, I was able to see OSX and App updates, download and install them.&quot;
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&quot;My Spotlight index wasn&#39;t borked, it just wasn&#39;t there. I don&#39;t use spotlight so I keep it turned off. Odd that they would magically start requiring it to be turned on to perform updates.&quot;
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&quot;It&#39;s the new paradigm. Updaates are tied to the Mac App Store which needs the Spotlight index to determine what&#39;s on your computer.&quot;
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                        <DT><A HREF="http://www.justanswer.com/mac-computers/74h3n-the-app-store-temporarily-unavailable-please-try-again.html" name="http://www.justanswer.com/mac-computers/74h3n-the-app-store-temporarily-unavailable-please-try-again.html" ADD_DATE="1386262502" ICON_URI="http://www.justanswer.com/img/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.justanswer.com/img/favicon.ico" style="margin-right: 0.5em;"/>&quot;The App Store is temporarily unavailable. Please try again - JustAnswer</A><a name="&quot;The App Store is temporarily unavailable. Please try again - JustAnswer" href="#&quot;The App Store is temporarily unavailable. Please try again - JustAnswer" style="margin-left: 0.5em;">&para;</a>
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<DD>page's description: Question - &quot;The App Store is temporarily unavailable. Please try again - 2R. Find the answer to this and other Mac questions on JustAnswer.
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&quot;I can sign into the store if I open it from the Dock and sign in manually&quot;
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                        <DT><A HREF="https://discussions.apple.com/message/24118053#24118053" name="https://discussions.apple.com/message/24118053#24118053" ADD_DATE="1387234645" ICON_URI="https://discussions.apple.com/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="https://discussions.apple.com/favicon.ico" style="margin-right: 0.5em;"/>Another App Store Updates problem: Apple Support Communities</A><a name="Another App Store Updates problem: Apple Support Communities" href="#Another App Store Updates problem: Apple Support Communities" style="margin-left: 0.5em;">&para;</a>
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<DD>&quot;Dec 13, 2013&quot; a recent problem
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&quot;Fortunately, I am able to go to the command line and use the softwareupdate program and do my updates manually so I know that the problem is at the App Store leve.&quot;
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                    </DL><p>
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                    <DT><a name="10.8 Mountain Lion upgrade" href="#10.8 Mountain Lion upgrade"><H3 ADD_DATE="1368126870">10.8 Mountain Lion upgrade</H3></a>
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<DD>WARNING: DO NOT upgrade unless you are prepared to fix several programs broken by the upgrade: svn, Apache PHP, Apache ~/Sites dirs, PostgreSQL, Python psycopg2, Python OrderedDict, X11, Xcode
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instructions are in the corresponding subdirs.
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                </DL><p>
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                <DT><a name="bash" href="#bash"><H3 ADD_DATE="1364942440">bash</H3></a>
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                <DL><p>
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                    <DT><a name="** modifying a running shell script" href="#** modifying a running shell script"><H3 ADD_DATE="1387293257">** modifying a running shell script</H3></a>
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<DD>you need to first unlink the file, and *then* upload the modified version. in jEdit, this can be done by enabling two-stage save. do **not** use `svn up`, as this is unsafe.
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</DD>
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                    <DL><p>
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                        <DT><A HREF="http://stackoverflow.com/questions/8335747/emacs-workflow-to-edit-bash-scripts-while-they-run/8926090#8926090" name="http://stackoverflow.com/questions/8335747/emacs-workflow-to-edit-bash-scripts-while-they-run/8926090#8926090" ADD_DATE="1387293423" ICON_URI="http://cdn.sstatic.net/stackoverflow/img/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://cdn.sstatic.net/stackoverflow/img/favicon.ico" style="margin-right: 0.5em;"/>**** Emacs workflow to edit Bash scripts while they run - Stack Overflow</A><a name="**** Emacs workflow to edit Bash scripts while they run - Stack Overflow" href="#**** Emacs workflow to edit Bash scripts while they run - Stack Overflow" style="margin-left: 0.5em;">&para;</a>
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<DD>&quot;The reason deletion is safe but modification is not is that in Unix, a deleted file gets inaccessible from the file system, but the processes that had opened the file (here, /bin/bash) can still read it&quot;
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so you can fix the problem by first unlinking the file, and *then* uploading the modified version
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                        <DT><A HREF="http://stackoverflow.com/questions/4754592/could-replacing-a-bash-script-with-a-new-version-cause-a-running-instance-of-the" name="http://stackoverflow.com/questions/4754592/could-replacing-a-bash-script-with-a-new-version-cause-a-running-instance-of-the" ADD_DATE="1387293076" ICON_URI="http://cdn.sstatic.net/stackoverflow/img/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://cdn.sstatic.net/stackoverflow/img/favicon.ico" style="margin-right: 0.5em;"/>** Could replacing a bash script with a new version cause a running instance of the script to fail - Stack Overflow</A><a name="** Could replacing a bash script with a new version cause a running instance of the script to fail - Stack Overflow" href="#** Could replacing a bash script with a new version cause a running instance of the script to fail - Stack Overflow" style="margin-left: 0.5em;">&para;</a>
1873
<DD>&quot;However, this would require that the running bash script is reading from the disk as it gets to each new step. Is this how it works?&quot; yes, unfortunately
1874

  
1875
incorrect: &quot;bash will also check whether the source file is updated while the script is running. If it has been, bash will reload it and continue running it from the current position reopen the file, seek to the current position of the script, and continue running the script from that point&quot;
1876
no, it just reads from disk: &quot;mob&#39;s explanation is wrong, stating that it reads all at invocation and checks updates. See my answer to the question Emacs workflow to edit Bash scripts while they run [bookmarked above]&quot;
1877

  
1878
&quot;if you need to prevent bash to reaload script you must to call it as stream.&quot;
1879
                    </DL><p>
1844 1880
                    <DT><a name="doc" href="#doc"><H3 ADD_DATE="1368219023">doc</H3></a>
1845 1881
                    <DL><p>
1846 1882
                        <DT><A HREF="http://www.gnu.org/software/bash/manual/bash.html" name="http://www.gnu.org/software/bash/manual/bash.html" ADD_DATE="1317673821" ICON_URI="http://www.gnu.org/favicon.ico"><img width="16" height="16" src="http://www.gnu.org/favicon.ico" style="margin-right: 0.5em;"/>Bash Reference Manual</A><a name="Bash Reference Manual" href="#Bash Reference Manual" style="margin-left: 0.5em;">&para;</a>
......
1871 1907
                    <DT><A HREF="http://unix.stackexchange.com/questions/39623/trap-err-and-echoing-the-error-line" name="http://unix.stackexchange.com/questions/39623/trap-err-and-echoing-the-error-line" ADD_DATE="1368186553" ICON_URI="http://cdn.sstatic.net/unix/img/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://cdn.sstatic.net/unix/img/favicon.ico" style="margin-right: 0.5em;"/>bash - Trap, ERR, and echoing the error line - Unix &amp; Linux Stack Exchange</A><a name="bash - Trap, ERR, and echoing the error line - Unix &amp; Linux Stack Exchange" href="#bash - Trap, ERR, and echoing the error line - Unix &amp; Linux Stack Exchange" style="margin-left: 0.5em;">&para;</a>
1872 1908
                    <DT><A HREF="http://www.linuxjournal.com/content/bash-associative-arrays" name="http://www.linuxjournal.com/content/bash-associative-arrays" ADD_DATE="1366930804" ICON_URI="http://www.linuxjournal.com/files/linuxjournal.com/ufiles/linuxjournal_favicon.png" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.linuxjournal.com/files/linuxjournal.com/ufiles/linuxjournal_favicon.png" style="margin-right: 0.5em;"/>Bash Associative Arrays | Linux Journal</A><a name="Bash Associative Arrays | Linux Journal" href="#Bash Associative Arrays | Linux Journal" style="margin-left: 0.5em;">&para;</a>
1873 1909
<DD>page's description: The bash man page has long had the following bug listed: &quot;It&#39;s too big and too slow&quot; (at the very bottom of the man page). If you agree with that, then you probably won&#39;t want to read about the &quot;new&quot; associative arrays that were added in version 4.0 of bash.
1910
                    <DT><A HREF="http://www.fvue.nl/wiki/Bash:_Detect_if_variable_is_an_array" name="http://www.fvue.nl/wiki/Bash:_Detect_if_variable_is_an_array" ADD_DATE="1374722871" ICON_URI="http://www.fvue.nl/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.fvue.nl/favicon.ico" style="margin-right: 0.5em;"/>Bash: Detect if variable is an array - FVue</A><a name="Bash: Detect if variable is an array - FVue" href="#Bash: Detect if variable is an array - FVue" style="margin-left: 0.5em;">&para;</a>
1874 1911
                    <DT><A HREF="http://blog.wains.be/2008/05/24/detaching-processes-from-the-current-bash-session/" name="http://blog.wains.be/2008/05/24/detaching-processes-from-the-current-bash-session/" ADD_DATE="1331603478" LAST_CHARSET="UTF-8"><img width="16" height="16" src="blank.gif" style="margin-right: 0.5em;"/>Detaching processes from the current bash session | Sébastien Wains</A><a name="Detaching processes from the current bash session | Sébastien Wains" href="#Detaching processes from the current bash session | Sébastien Wains" style="margin-left: 0.5em;">&para;</a>
1875 1912
                    <DT><A HREF="http://stackoverflow.com/questions/1203583/how-do-i-rename-a-bash-function" name="http://stackoverflow.com/questions/1203583/how-do-i-rename-a-bash-function" ADD_DATE="1366892821" ICON_URI="http://cdn.sstatic.net/stackoverflow/img/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://cdn.sstatic.net/stackoverflow/img/favicon.ico" style="margin-right: 0.5em;"/>How do I rename a bash function? - Stack Overflow</A><a name="How do I rename a bash function? - Stack Overflow" href="#How do I rename a bash function? - Stack Overflow" style="margin-left: 0.5em;">&para;</a>
1876 1913
                    <DT><A HREF="http://stackoverflow.com/questions/13360091/how-to-reverse-array-in-bash-onliner-for-loop" name="http://stackoverflow.com/questions/13360091/how-to-reverse-array-in-bash-onliner-for-loop" ADD_DATE="1366867552" ICON_URI="http://cdn.sstatic.net/stackoverflow/img/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://cdn.sstatic.net/stackoverflow/img/favicon.ico" style="margin-right: 0.5em;"/>How to reverse array in bash onliner FOR loop? - Stack Overflow</A><a name="How to reverse array in bash onliner FOR loop? - Stack Overflow" href="#How to reverse array in bash onliner FOR loop? - Stack Overflow" style="margin-left: 0.5em;">&para;</a>
......
1902 1939
<DD>page's description: I was trying to install gEda which installed fine from their CD, but after setting the path variables I ran rehash as the instructions told me and I
1903 1940

  
1904 1941
&quot;Bash doesn&#39;t have the rehash builtin command. Use &quot;hash -r&quot; instead which is equivalent.&quot;
1905
                    <DT><A HREF="http://www.fvue.nl/wiki/Bash:_Detect_if_variable_is_an_array" name="http://www.fvue.nl/wiki/Bash:_Detect_if_variable_is_an_array" ADD_DATE="1374722871" ICON_URI="http://www.fvue.nl/favicon.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="http://www.fvue.nl/favicon.ico" style="margin-right: 0.5em;"/>Bash: Detect if variable is an array - FVue</A><a name="Bash: Detect if variable is an array - FVue" href="#Bash: Detect if variable is an array - FVue" style="margin-left: 0.5em;">&para;</a>
1906 1942
                </DL><p>
1907 1943
                <DT><a name="gnome-keyring" href="#gnome-keyring"><H3 ADD_DATE="1349231436">gnome-keyring</H3></a>
1908 1944
                <DL><p>
......
2408 2444
<DD>page's description: Free HTML XHTML CSS JavaScript jQuery XML DOM XSL XSLT RSS AJAX ASP .NET PHP SQL tutorials, references, examples for web building.
2409 2445
        </DL><p>
2410 2446
        <DT><A HREF="https://www.google.com/search?q=%s" name="https://www.google.com/search?q=%s" ADD_DATE="1318464507" ICON_URI="https://www.google.com/favicon.ico" SHORTCUTURL="g"><img width="16" height="16" src="https://www.google.com/favicon.ico" style="margin-right: 0.5em;"/>Google</A><a name="Google" href="#Google" style="margin-left: 0.5em;">&para;</a>
2411
        <DT><A HREF="https://www.google.com/calendar/render" name="https://www.google.com/calendar/render" ADD_DATE="1318014776" ICON_URI="https://calendar.google.com/googlecalendar/images/favicon_v2013_26.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="https://calendar.google.com/googlecalendar/images/favicon_v2013_26.ico" style="margin-right: 0.5em;"/>Google Calendar</A><a name="Google Calendar" href="#Google Calendar" style="margin-left: 0.5em;">&para;</a>
2447
        <DT><A HREF="https://www.google.com/calendar/render" name="https://www.google.com/calendar/render" ADD_DATE="1318014776" ICON_URI="https://calendar.google.com/googlecalendar/images/favicon_v2013_5.ico" LAST_CHARSET="UTF-8"><img width="16" height="16" src="https://calendar.google.com/googlecalendar/images/favicon_v2013_5.ico" style="margin-right: 0.5em;"/>Google Calendar</A><a name="Google Calendar" href="#Google Calendar" style="margin-left: 0.5em;">&para;</a>
2412 2448
        <DT><A HREF="javascript:(function(){var%20ca,cea,cs,df,dfe,i,j,x,y;function%20n(i,what){return%20i+%22%20%22+what+((i==1)?%22%22:%22s%22)}ca=cea=cs=0;df=document.forms;for(i=0;i<df.length;++i){x=df[i];dfe=x.elements;if(x.onsubmit){x.onsubmit=%22%22;++cs;}if(x.attributes[%22autocomplete%22]){x.attributes[%22autocomplete%22].value=%22on%22;++ca;}for(j=0;j<dfe.length;++j){y=dfe[j];if(y.attributes[%22autocomplete%22]){y.attributes[%22autocomplete%22].value=%22on%22;++cea;}}}alert(%22Removed%20autocomplete=off%20from%20%22+n(ca,%22form%22)+%22%20and%20from%20%22+n(cea,%22form%20element%22)+%22,%20and%20removed%20onsubmit%20from%20%22+n(cs,%22form%22)+%22.%20After%20you%20type%20your%20password%20and%20submit%20the%20form,%20the%20browser%20will%20offer%20to%20remember%20your%20password.%22)})();" name="javascript:(function(){var%20ca,cea,cs,df,dfe,i,j,x,y;function%20n(i,what){return%20i+%22%20%22+what+((i==1)?%22%22:%22s%22)}ca=cea=cs=0;df=document.forms;for(i=0;i<df.length;++i){x=df[i];dfe=x.elements;if(x.onsubmit){x.onsubmit=%22%22;++cs;}if(x.attributes[%22autocomplete%22]){x.attributes[%22autocomplete%22].value=%22on%22;++ca;}for(j=0;j<dfe.length;++j){y=dfe[j];if(y.attributes[%22autocomplete%22]){y.attributes[%22autocomplete%22].value=%22on%22;++cea;}}}alert(%22Removed%20autocomplete=off%20from%20%22+n(ca,%22form%22)+%22%20and%20from%20%22+n(cea,%22form%20element%22)+%22,%20and%20removed%20onsubmit%20from%20%22+n(cs,%22form%22)+%22.%20After%20you%20type%20your%20password%20and%20submit%20the%20form,%20the%20browser%20will%20offer%20to%20remember%20your%20password.%22)})();" ADD_DATE="1318292619" SHORTCUTURL="r"><img width="16" height="16" src="blank.gif" style="margin-right: 0.5em;"/>remember password</A><a name="remember password" href="#remember password" style="margin-left: 0.5em;">&para;</a>
2413 2449
        <HR>        <DT><A HREF="place:sort=14&type=6&maxResults=10&queryType=1" name="place:sort=14&type=6&maxResults=10&queryType=1"><img width="16" height="16" src="blank.gif" style="margin-right: 0.5em;"/>Recent Tags</A><a name="Recent Tags" href="#Recent Tags" style="margin-left: 0.5em;">&para;</a>
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