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Name Size Revision Age Author Comment
  BIEN2 10896 almost 11 years Aaron Marcuse-Kubitza added BIEN2/traits_observation_counts.xls
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  backups 11899 over 10 years Aaron Marcuse-Kubitza updated backups/TNRS.backup.md5
  bin 11918 over 10 years Aaron Marcuse-Kubitza bugfix: bin/map: in_is_db: don't ignore errors ...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  derived 11783 over 10 years Aaron Marcuse-Kubitza derived/biengeo/README.txt: updated geoscrub.sh...
  exports 11599 over 10 years Aaron Marcuse-Kubitza exports/2013-7-10.Naia.range_limiting_factors.c...
  inputs 11922 over 10 years Aaron Marcuse-Kubitza bugfix: inputs/TEX/Specimen2/map.csv: mapped BA...
  lib 11914 over 10 years Aaron Marcuse-Kubitza fix: lib/sh/util.sh: verbosity_min(): usage: cl...
  mappings 11513 over 10 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped taxon_dete...
  planning 11909 over 10 years Aaron Marcuse-Kubitza planning/timeline/timeline.2013.xls: updated fo...
  schemas 11921 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: analytical_stem_view: scie...
  web 11919 over 10 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
.htaccess 326 Bytes 8771 about 11 years Aaron Marcuse-Kubitza /.htaccess: use canonical URL without symlinks
.rsync_filter.upload 33 Bytes 10042 about 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
.rsync_ignore 12 Bytes 10042 about 11 years Aaron Marcuse-Kubitza /.rsync_ignore: temp files: hide them on upload...
Makefile 13.4 KB 11896 over 10 years Aaron Marcuse-Kubitza bugfix: /Makefile: install: need to run inputs/...
README.TXT 25.8 KB 11915 over 10 years Aaron Marcuse-Kubitza /README.TXT: Full database import: documented t...
fix_perms 97 Bytes 7560 over 11 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 over 11 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 80.2 KB 11788 over 10 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...
run 511 Bytes 11590 over 10 years Aaron Marcuse-Kubitza /run: use new exports/geoscrub_input.csv.run
unmapped_terms.csv 33 KB 11788 over 10 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...

Latest revisions

# Date Author Comment
11922 12/19/2013 11:42 PM Aaron Marcuse-Kubitza

bugfix: inputs/TEX/Specimen2/map.csv: mapped BARCODE to accessionNumber so that we have a unique ID for each row
11921 12/19/2013 11:11 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_stem_view: scientificName_verbatim: don't use taxonverbatim.taxonname+author as the scientificName_verbatim if only the author is provided. (this lead to weird scientificName_verbatims that contain just the author.)
11920 12/17/2013 08:06 AM Aaron Marcuse-Kubitza

inputs/datasource_release_status.xlsx: updated
11919 12/17/2013 07:28 AM Aaron Marcuse-Kubitza

web/links/index.htm: updated to Firefox bookmarks. added links for fixing the "App Store is temporarily unavailable" error (turn on Spotlight) and modifying a running shell script (unlink it first).
11918 12/17/2013 05:47 AM Aaron Marcuse-Kubitza

bugfix: bin/map: in_is_db: don't ignore errors when the table does not exist, because these prevent an errexit and allow an import to continue when a staging table is missing. suppressing this error had previously been necessary because metadata-only tables (Source/) used to not have installed staging tables, and the program had to react accordingly.
11917 12/16/2013 07:05 PM Aaron Marcuse-Kubitza

inputs/CVS/^taxon_observation.**.sample/create.sql: added Mike Lee's additional plots used to validate confidentiality-related fields (wiki.vegpath.org/CVS_validation#plots-to-include)
11916 12/16/2013 06:00 PM Aaron Marcuse-Kubitza

bugfix: inputs/CVS/^taxon_observation.**.sample/create.sql: include taxonName in the subset of columns that's imported for the validation, because it is _alt-ed with scientificName for forming the TNRS input name. this is unique to CVS, which is why it was not part of the validation subset copied from the VegBank subset.
11915 12/16/2013 05:46 PM Aaron Marcuse-Kubitza

/README.TXT: Full database import: documented that you should always start with a clean shell, which does not have changes to the env vars. (there have been inexplicable bugs that went away after closing and reopening the terminal window.) note that running `exec bash` is not sufficient to reset the env vars.
11914 12/16/2013 04:58 PM Aaron Marcuse-Kubitza

fix: lib/sh/util.sh: verbosity_min(): usage: clarified that '' is a special value that causes $verbosity to be overwritten to ''
11913 12/16/2013 04:45 PM Aaron Marcuse-Kubitza

lib/runscripts/table.run: added test_() target and use it in remake_VegBIEN_mappings() (it would not be clear that remake_VegBIEN_mappings() runs the tests)

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