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3
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wheeler
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<?php
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$primitiveTypes = array(
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'DEFCATEGORIE' => 'models.CharField(max_length=255',
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'decimalLatitudeDataType' => 'models.FloatField(', #'xs:double [-90,90]',
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'DecimalLatitude' => 'models.FloatField(', #xs:double [-90,90]',
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'decimalLongitudeDataType' => 'models.FloatField(', #xs:double [-180,180]',
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'DecimalLongitude' => 'models.FloatField(', #xs:double [-180,180]',
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'spatialFitDataType' => 'models.FloatField(', #xs:double (0 or >1 or undefined)',
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'FootprintSpatialFit' => 'models.FloatField(', #xs:double (0 or >1 or undefined)',
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'GeodeticDatum' => 'models.CharField(max_length=255',
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'VerbatimCoordinates' => 'models.CharField(max_length=255',
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'VerbatimLatitude' => 'models.CharField(max_length=255',
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'VerbatimLongitude' => 'models.CharField(max_length=255',
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'VerbatimCoordinateSystem' => 'models.CharField(max_length=255',
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'GeoreferenceProtocol' => 'models.CharField(max_length=255',
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'GeoreferenceSources' => 'models.CharField(max_length=255',
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'GeoreferenceVerificationStatus' => 'models.CharField(max_length=255',
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'GeoreferenceRemarks' => 'models.CharField(max_length=255',
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'FootprintWKT' => 'models.CharField(max_length=255',
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'CoordinateUncertaintyInMeters' => 'models.PositiveIntegerField(', #'positiveInteger',
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'PointRadiusSpatialFit' => 'models.FloatField(', #'xs:double (0 or >1 or undefined)',
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'PERCENT' => 'models.FloatField(', #'xsd:decimal [0,100]',
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'RoleType' => 'models.CharField(max_length=255',
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'TaxonomicRankEnum' => 'models.CharField(max_length=255',
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'TINYINT' => 'models.FloatField(', #'xsd:decimal [-128,128]',
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'yearDate' => 'models.DateField(', #'xs:gYear xs:date (union of)',
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'anyType' => 'models.TextField(', #'xsd:anyType',
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'InlineType' => 'models.TextField(', #'xs:anyType',
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'date' => 'models.DateField(', #'xsd:date',
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'anyURI' => 'models.CharField(max_length=255', #'xs:anyURI',
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'boolean' => 'models.NullBooleanField(',
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'token' => 'models.CharField(max_length=255',
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'language' => 'models.CharField(max_length=255',
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'decimal' => 'models.FloatField(', #'xsd:decimal',
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'gYear' => 'models.DateField(', #'xsd:gYear',
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'string' => 'models.CharField(max_length=255',
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'permission' => 'models.CharField(max_length=255',
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'positiveInteger' => 'models.PositiveIntegerField(', #'xs:positiveInteger',
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'time' => 'models.TimeField(', #'xs:time',
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'double' => 'models.FloatField(', #'xs:double',
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'integer' => 'models.IntegerField(', #'xs:integer',
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'Name' => 'models.CharField(max_length=255', #'xs:Name',
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'NMTOKEN' => 'models.CharField(max_length=255', #'xs:NMTOKEN',
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'DateTimeISO' => 'models.CharField(max_length=255',
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'dayOfYearDataType' => 'models.IntegerField(', #'xs:integer',
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'DescriptorType' => 'models.CharField(max_length=255',
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'FunctionType' => 'models.CharField(max_length=255',
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'GRingType' => 'models.TextField(', #'xs:anyType',
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'IDType' => 'models.CharField(max_length=255',
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'KeyTypeCode' => 'models.CharField(max_length=255',
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'MEDIUMINT' => 'models.FloatField(', #'xs:decimal',
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'NomenclaturalCodesEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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'NomenclaturalTypeStatusOfUnitsEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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'positiveDouble' => 'models.FloatField(', #'xs:double',
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'probabilityType' => 'models.FloatField(', #'xs:double',
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'ScopeType' => 'models.CharField(max_length=255',
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'SMALLINT' => 'models.FloatField(', #'xs:decimal',
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'STRATUMINDEX' => 'models.CharField(max_length=255',
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'SystemType' => 'models.CharField(max_length=255',
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'TaxonomicRankAboveSuperfamilyEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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'TaxonomicRankBelowSubspeciesEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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'TaxonomicRankCultivatedPlants' => 'models.CharField(max_length=255', #'xsd:Name',
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'TaxonomicRankFamilyGroupEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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'TaxonomicRankFamilySubdivisionEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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'TaxonomicRankGenusGroupEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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'TaxonomicRankGenusSubdivisionEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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'TaxonomicRankSpeciesGroupEnum' => 'models.CharField(max_length=255', #'xsd:Name',
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);
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$ignoreTypes = array(
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"description" => true,
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"example" => true,
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"moduleDescription" => true,
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"moduleDocs" => true,
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"moduleName" => true,
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"recommendedUsage" => true,
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"standAlone" => true,
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"summary" => true,
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"tooltip" => true,
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"annotation" => true,
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"appinfo" => true,
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"documentation" => true,
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"import" => true,
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"include" => true,
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"schema" => true,
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"AdditionalAbbreviations" => true,
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"BacteriaStatus" => true,
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"BioCodeStatus" => true,
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"BotanyStatus" => true,
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"li" => true,
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"p" => true,
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"para" => true,
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"PreferredAbbreviation" => true,
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"section" => true,
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"Specification" => true,
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"SuffixAlgae" => true,
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"SuffixAnimalia" => true,
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"SuffixBacteriae" => true,
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"SuffixFungi" => true,
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"SuffixFungi" => true,
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"SuffixPlantae" => true,
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"title" => true,
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"ul" => true,
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"#text" => true,
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"#comment" => true,
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"ZoologyStatus" => true
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);
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$knownAttributes = array(
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"minOccurs" => True,
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"maxOccurs" => True,
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"default" => True,
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"use" => True,
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"mixed" => True,
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"name" => True,
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"type" => True,
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"namespace" => True,
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"ref" => True,
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"nillable" => True,
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"base" => True,
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#not sure about what to do with these, probably nothing
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"processContents" => True
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);
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6
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wheeler
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$geoSpatialTypes = array(
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"GRingPointType" => array(
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'colDef' => 'gRingPoint = models.PointField(null=True,blank=True)',
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'importDef' =>
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8
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wheeler
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" if self.gRingLatitude != None and self.gRingLongitude != None:\n".
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" self.gRingPoint = Point(float(self.gRingLatitude),float(self.gRingLongitude))"
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6
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wheeler
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),
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"geospatialType" => array(
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'colDef' => 'decimalPoint = models.PointField(null=True,blank=True)',
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'importDef' =>
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8
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wheeler
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" if self.geospatialType_DecimalLatitude != None and self.geospatialType_DecimalLongitude != None:\n".
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" self.decimalPoint = Point(float(self.geospatialType_DecimalLatitude),float(self.geospatialType_DecimalLongitude))"
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6
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wheeler
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)
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);
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$manyToManyRelationships = array(
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'AccessType' => array( 'AccessRule' => true ),
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'ParagraphType' => array( 'ListType' => true,
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'SubSuperScriptType' => true ),
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'listitem' => array( 'ListType' => true ),
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'SubSuperScriptType' => array( 'SubSuperScriptType' => true ),
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'ScientificName' => array( 'NomenclaturalNoteType' => true ),
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'ResourceGroup' => array( 'ResponsibleParty' => true )
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);
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$indexableCols = array(
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"attributeID" => True,
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"attr_id" => True,
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156 |
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"citationID" => True,
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157 |
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"contributorID" => True,
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158 |
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"coverTypeAttributeID" => True,
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"individualOrganismID" => True,
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"methodID" => True,
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"partyID" => True,
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"plotObservationID" => True,
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"plotUniqueIdentifierID" => True,
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164 |
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"protocolID" => True,
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"qualityAssessmentMethodID" => True,
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166 |
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"referenceCitationID" => True,
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167 |
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"relatedItemID" => True,
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168 |
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"relatedPlotID" => True,
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169 |
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"stratumID" => True,
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"stratumObservationID" => True,
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"taxonConceptID" => True,
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"taxonNameID" => True,
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"taxonNameUsageConceptID" => True,
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"vegetationComponentAttributeID" => True,
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"plotUniqueIdentifier" => True,
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"plotUniqueIdentifierID" => True
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);
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//Unfortunately Django doesn't support composite keys which is what would be necessary to add these
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//FK constraints. This is because multiple vegx instances will have the same ids for the same nodes
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//(e.g. many VegX documents will have AttributeType nodes with the same id attribute. This is
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//somewhat by design). We would need to link by attr_id AND entryInfo. Another option would be to
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//store and manage all possible values (attributes, methods, citations, etc.) in BIEN.
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$nativeVegXPointers = array(
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/*
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"attributeID" => array(
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'def' => "models.ForeignKey('AttributeType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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'to_field' => 'attr_id',
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'fk_type' => 'AttributeType'
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),
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"citationID" => array(
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'def' => "models.ForeignKey('CitationType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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'to_field' => 'attr_id',
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'fk_type' => 'CitationType'
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),
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// Not sure "contributorID" => "models.ForeignKey('ResponsibleParty', to_field='',null=True, blank=True, db_index=True) #internal key",
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197 |
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"coverTypeAttributeID" => array(
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'def' => "models.ForeignKey('AttributeType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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'to_field' => 'attr_id',
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'fk_type' => 'AttributeType'
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),
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202 |
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"individualOrganismID" => array(
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'def' => "models.ForeignKey('IndividualOrganismType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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'to_field' => 'attr_id',
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'fk_type' => 'IndividualOrganismType'
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),
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"methodID" => array(
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'def' => "models.ForeignKey('MethodType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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209 |
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'to_field' => 'attr_id',
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'fk_type' => 'MethodType'
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),
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"partyID" => array(
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'def' => "models.ForeignKey('ResponsibleParty', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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'to_field' => 'attr_id',
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'fk_type' => 'ResponsibleParty'
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),
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"plotObservationID" => array(
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'def' => "models.ForeignKey('ObservationType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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219 |
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'to_field' => 'attr_id',
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'fk_type' => 'ObservationType'
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),
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222 |
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"plotUniqueIdentifierID" => array(
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223 |
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'def' => "models.ForeignKey('PlotType', to_field='plotUniqueIdentifier',null=True, blank=True, db_index=True) #internal key",
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224 |
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'to_field' => 'plotUniqueIdentifier',
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'fk_type' => 'PlotType'
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226 |
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),
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227 |
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"protocolID" => array(
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228 |
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'def' => "models.ForeignKey('ProtocolType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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229 |
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'to_field' => 'attr_id',
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'fk_type' => 'ProtocolType'
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),
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232 |
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"qualityAssessmentMethodID" => array(
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233 |
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'def' => "models.ForeignKey('MethodType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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234 |
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'to_field' => 'attr_id',
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'fk_type' => 'MethodType'
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),
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237 |
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"referenceCitationID" => array(
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238 |
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'def' => "models.ForeignKey('CitationType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
|
239 |
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'to_field' => 'attr_id',
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'fk_type' => 'CitationType'
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241 |
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),
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242 |
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// too general, appears to be used to reference *any* other item in the xml document "relatedItemID" => "models.ForeignKey('', to_field='',null=True, blank=True, db_index=True) #internal key",
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243 |
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// not very useful, this pointer doesn't seem to add any info not already in schema "relatedPlotID" => "models.ForeignKey('', to_field='',null=True, blank=True, db_index=True) #internal key",
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244 |
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"stratumID" => array(
|
245 |
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'def' => "models.ForeignKey('StratumType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
|
246 |
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'to_field' => 'attr_id',
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247 |
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'fk_type' => 'StratumType'
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248 |
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),
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249 |
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"stratumObservationID" => array(
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250 |
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'def' => "models.ForeignKey('StratumObservationType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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251 |
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'to_field' => 'attr_id',
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252 |
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'fk_type' => 'StratumObservationType'
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253 |
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),
|
254 |
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"taxonConceptID" => array(
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255 |
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'def' => "models.ForeignKey('TaxonConceptType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
|
256 |
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'to_field' => 'attr_id',
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257 |
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'fk_type' => 'TaxonConceptType'
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258 |
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),
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259 |
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"taxonNameID" => array(
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260 |
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'def' => "models.ForeignKey('ScientificName', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
|
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'to_field' => 'attr_id',
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'fk_type' => 'ScientificName'
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263 |
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),
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264 |
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"taxonNameUsageConceptID" => array(
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265 |
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'def' => "models.ForeignKey('TaxonNameUsageType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
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'to_field' => 'attr_id',
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'fk_type' => 'TaxonNameUsageType'
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268 |
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),
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269 |
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"vegetationComponentAttributeID" => array(
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270 |
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'def' => "models.ForeignKey('AttributeType', to_field='attr_id',null=True, blank=True, db_index=True) #internal key",
|
271 |
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'to_field' => 'attr_id',
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272 |
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'fk_type' => 'AttributeType'
|
273 |
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)
|
274 |
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*/
|
275 |
|
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);
|
276 |
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|
277 |
8
|
wheeler
|
$tableRenames = array(
|
278 |
10
|
wheeler
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"taxonNamesLC" => "taxonNames",
|
279 |
|
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"taxonConceptsLC" => "taxonConcepts",
|
280 |
|
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"temporalCoverageLC" => "temporalCoverage",
|
281 |
|
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"taxonomicCoverageLC" => "taxonomicCoverage",
|
282 |
|
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"taxonRelationshipAssertionMapList" => "taxonRelationshipAssertions",
|
283 |
|
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"taxonRelationshipAssertionMap" => "taxonRelationshipAssertion"
|
284 |
|
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|
285 |
8
|
wheeler
|
);
|
286 |
3
|
wheeler
|
?>
|