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1 6406 aaronmk
SALVIAS-CSV,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
2 4336 aaronmk
plot_code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
3
PLOT_ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4 7464 aaronmk
PLOT_ID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
5 4324 aaronmk
plot_code,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
6
PLOT_ID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
7 4767 aaronmk
plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
8 4809 aaronmk
elev_m,/location/elevation_m/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
9 7703 aaronmk
elev_min_m,/location/elevation_m/_alt/2/_avg/1,
10
elev_max_m,/location/elevation_m/_alt/2/_avg/2,
11 6432 aaronmk
locality_description,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
12 3968 aaronmk
plot_methodology,/location/locationevent/*_id/method/name,
13 6773 aaronmk
observation_type,/location/locationevent/*_id/method/observationmeasure,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
14 3968 aaronmk
project,/location/locationevent/*_id/project/projectname,
15 5977 aaronmk
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
16
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
17 6002 aaronmk
plot_code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
18
PLOT_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
19 6217 aaronmk
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1",
20
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1",
21 3968 aaronmk
holdridge_life_zone,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
22
life_zone_code,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
23 11107 aaronmk
PLOT_ID,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
24
plot_code,"/location/locationevent/locationevent:[@fkey=parent_id]/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
25 6217 aaronmk
date_finish,/location/locationevent/obsenddate/_alt/1,
26
date_start,/location/locationevent/obsstartdate/_alt/1,
27 7469 aaronmk
precip_mm,/location/locationevent/precipitation_m/_mm_to_m/value,
28 6482 aaronmk
soil_acidity,"/location/locationevent/soilsample/acidity_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
29
soil_base,/location/locationevent/soilsample/basesaturation_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
30
soil_Ca,/location/locationevent/soilsample/calcium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
31
soil_C,/location/locationevent/soilsample/carbon_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
32
soil_cation_cap,/location/locationevent/soilsample/cationexchangecapacity_cmol_kg,
33
clay_percent,/location/locationevent/soilsample/clay_fraction/_percent_to_fraction/value,
34
soil_conductivity,/location/locationevent/soilsample/conductivity,
35
soil_Mg,/location/locationevent/soilsample/magnesium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
36
soil_N,/location/locationevent/soilsample/nitrogen_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
37
organic_percent,/location/locationevent/soilsample/organic_fraction/_percent_to_fraction/value,
38
pH,/location/locationevent/soilsample/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
39
soil_P,"/location/locationevent/soilsample/phosphorus_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
40
soil_K,/location/locationevent/soilsample/potassium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
41
sand_percent,/location/locationevent/soilsample/sand_fraction/_percent_to_fraction/value,
42
silt_percent,/location/locationevent/soilsample/silt_fraction/_percent_to_fraction/value,
43
soil_Na,/location/locationevent/soilsample/sodium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
44
soil_texture,/location/locationevent/soilsample/texture,
45 4753 aaronmk
temp_c,/location/locationevent/temperature_c,
46 3983 aaronmk
locality_description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
47 5861 aaronmk
lat_decimal,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
48
long_decimal,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
49 5855 aaronmk
major_geo,/location/locationplace/*_id/place/continent,
50
country,/location/locationplace/*_id/place/country,
51
pol2,/location/locationplace/*_id/place/county,Brad: No pol2=countyParish
52 6179 aaronmk
lat_decimal,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
53
long_decimal,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
54
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
55 6294 aaronmk
pol2,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,Brad: No pol2=countyParish
56 6179 aaronmk
pol1,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,Brad: No; pol1=stateProvince
57 5855 aaronmk
pol1,/location/locationplace/*_id/place/stateprovince,Brad: No; pol1=stateProvince
58 4753 aaronmk
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value,
59 4786 aaronmk
slope_gradient,/location/slopegradient_fraction/_alt/1,
60 8206 aaronmk
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
61
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
62 4979 aaronmk
recensused,,"** No join mapping for *recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
63 10209 aaronmk
row_num,,** No join mapping for *row_num **