Revision 1194
Added by Aaron Marcuse-Kubitza about 13 years ago
| inputs/SALVIAS/verify.ref.sql | ||
|---|---|---|
| 1 |
SELECT '# projects' AS ___; |
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SELECT count(*) AS count FROM projects; |
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| 3 |
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| 4 |
SELECT 'projects' AS ___; |
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SELECT CAST(project_id AS char) AS project FROM projects ORDER BY project; |
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SELECT 'each project\'s # locations' AS ___; |
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SELECT |
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CAST(projects.project_id AS char) AS project |
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, count(PlotID) AS locations_count |
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FROM projects |
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JOIN plotMetadata ON plotMetadata.project_id = projects.project_id |
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GROUP BY project |
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ORDER BY project |
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; |
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|
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SELECT '# locations' AS ___; |
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SELECT count(DISTINCT LatDec, LongDec) AS count FROM plotMetadata |
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; |
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| 20 |
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SELECT '# location events' AS ___; |
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SELECT count(*) AS count FROM plotMetadata; |
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SELECT '1st methods' AS ___; |
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SELECT DISTINCT |
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CAST(projects.project_id AS char) AS project |
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, PlotMethod AS method |
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FROM projects |
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JOIN plotMetadata ON plotMetadata.project_id = projects.project_id |
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ORDER BY project, method |
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LIMIT 10; |
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|
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SELECT '1st observation measures' AS ___; |
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SELECT DISTINCT |
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CAST(projects.project_id AS char) AS project |
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, lookup_MethodCode.Description AS observationmeasure |
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FROM projects |
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JOIN plotMetadata ON plotMetadata.project_id = projects.project_id |
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JOIN lookup_MethodCode ON lookup_MethodCode.MethodCode = plotMetadata.MethodCode |
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ORDER BY project, observationmeasure |
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LIMIT 10; |
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|
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/* |
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SELECT p.PlotID, p.SiteCode, COUNT(*) |
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FROM projects pr JOIN plotMetadata p JOIN plotObservations o |
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ON pr.project_id=p.project_id AND p.PlotID=o.PlotID |
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WHERE p.project_id=2 |
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GROUP BY p.PlotID, p.SiteCode; |
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SELECT NoInd, COUNT(*) AS observations |
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| 51 |
FROM plotObservations o JOIN plotMetadata p |
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ON o.PlotID=p.PlotID |
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WHERE project_id=2 |
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GROUP BY NoInd; |
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|
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SELECT p.PlotID, p.SiteCode, SUM(NoInd) AS Individuals |
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FROM projects pr JOIN plotMetadata p JOIN plotObservations o |
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ON pr.project_id=p.project_id AND p.PlotID=o.PlotID |
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WHERE p.project_id=2 |
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GROUP BY p.PlotID, p.SiteCode; |
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SELECT DISTINCT pr.project_id, project_name, PlotMethod, m.MethodCode, m.Description |
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FROM projects pr JOIN plotMetadata p JOIN lookup_MethodCode m |
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ON pr.project_id=p.project_id AND p.MethodCode=m.MethodCode |
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WHERE m.MethodCode=8; |
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SELECT NoInd, COUNT(*) AS observations |
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FROM plotObservations o JOIN plotMetadata p JOIN lookup_MethodCode m |
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ON o.PlotID=p.PlotID AND p.MethodCode=m.MethodCode |
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WHERE project_id=2 |
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GROUP BY NoInd; |
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SELECT p.PlotID, p.SiteCode, SUM(NoInd) AS Individuals |
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FROM projects pr JOIN plotMetadata p JOIN plotObservations o |
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ON pr.project_id=p.project_id AND p.PlotID=o.PlotID |
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WHERE p.project_id=1 |
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GROUP BY p.PlotID, p.SiteCode |
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LIMIT 10; |
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SELECT PlotMethod, MethodCode, Description, COUNT(project_id) as projects |
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FROM ( |
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SELECT DISTINCT p.PlotMethod, p.MethodCode, p.Description, p.project_id |
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FROM ( |
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SELECT project_id, PlotID, PlotMethod, m.MethodCode, m.Description |
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FROM plotMetadata p JOIN lookup_MethodCode m |
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ON p.MethodCode=m.MethodCode |
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) p JOIN plotObservations o JOIN stems s |
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ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID |
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GROUP BY project_id |
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) AS a |
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GROUP BY PlotMethod, MethodCode, Description; |
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SELECT DISTINCT pr.project_id, project_name |
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FROM projects pr JOIN plotMetadata p JOIN plotObservations o JOIN stems s |
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ON pr.project_id=p.project_id AND p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID |
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WHERE p.MethodCode=3; |
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SELECT p.PlotID, SiteName as plot, COUNT(*) AS stems |
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FROM plotMetadata p JOIN plotObservations o JOIN stems s |
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ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID |
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WHERE p.project_id=2 |
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GROUP BY p.PlotID, SiteName |
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LIMIT 10; |
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SELECT p.PlotID, SiteName AS plot, COUNT(DISTINCT Family, Genus, Species) AS SpeciesCount |
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FROM plotMetadata p JOIN plotObservations o |
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ON p.PlotID=o.PlotID |
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WHERE project_id=2 |
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GROUP BY p.PlotID, SiteName; |
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SELECT DISTINCT p.PlotID, SiteName AS plot, Family, CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName
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FROM plotMetadata p JOIN plotObservations o |
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ON p.PlotID=o.PlotID |
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WHERE p.PlotID=298; |
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SELECT name_status, count(*) FROM plotObservations GROUP BY name_status; |
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SELECT DISTINCT p.PlotID, SiteName AS plot, Family, |
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CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, name_status
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FROM plotMetadata p JOIN plotObservations o |
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ON p.PlotID=o.PlotID |
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WHERE p.PlotID=298; |
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SELECT DISTINCT p.PlotID, SiteName AS plot, Family, |
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CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, name_status
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FROM plotMetadata p JOIN plotObservations o |
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ON p.PlotID=o.PlotID |
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WHERE p.PlotID=298 AND name_status=1; |
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SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, COUNT(*) AS individuals |
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FROM plotMetadata p JOIN plotObservations o |
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ON p.PlotID=o.PlotID |
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WHERE p.PlotID=298 |
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GROUP BY p.PlotID, plot, subplot; |
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SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, SUM(NoInd) AS individuals |
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FROM plotMetadata p JOIN plotObservations o |
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ON p.PlotID=o.PlotID |
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WHERE p.PlotID=298 |
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GROUP BY p.PlotID, plot, subplot; |
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SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, SUM(NoInd) AS individuals |
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FROM plotMetadata p JOIN plotObservations o |
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ON p.PlotID=o.PlotID |
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WHERE p.PlotID=1 |
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GROUP BY p.PlotID, plot, subplot; |
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SELECT COUNT(*) FROM plotMetadata WHERE MethodCode=1; |
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SELECT PlotID FROM plotMetadata WHERE MethodCode=1 LIMIT 1; |
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SELECT p.PlotID, SiteCode AS plot, Family, |
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CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, cover_percent
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FROM plotMetadata p JOIN plotObservations o |
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ON p.PlotID=o.PlotID |
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WHERE p.PlotID=24589; |
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SELECT p.PlotID, p.SiteCode as plot, Country, PolDiv1 AS stateProvince, pol2 AS countyParish, |
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LatDec as latitude, LongDec as longitude, Elev as elevation |
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FROM projects pr JOIN plotMetadata p |
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ON pr.project_id=p.project_id |
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WHERE pr.project_id=1 |
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LIMIT 20; |
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SELECT AccessCode, COUNT(*) |
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FROM plotMetadata |
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GROUP BY AccessCode; |
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SELECT pr.project_id, project_name, project_pi, allow_download_all, PlotID, SiteCode, Country |
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FROM projects pr JOIN plotMetadata p |
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ON pr.project_id=p.project_id |
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WHERE p.AccessCode=1; |
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*/ |
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| inputs/SALVIAS/verify.ref | ||
|---|---|---|
| 1 |
___ |
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| 2 |
# projects |
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count |
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22 |
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| 5 |
___ |
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| 6 |
projects |
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project |
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1 |
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10 |
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11 |
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12 |
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13 |
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| 13 |
14 |
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17 |
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18 |
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| 16 |
19 |
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| 17 |
2 |
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| 18 |
21 |
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| 19 |
22 |
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| 20 |
23 |
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24 |
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25 |
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26 |
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3 |
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5 |
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6 |
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7 |
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8 |
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9 |
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| 30 |
___ |
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each project's # locations |
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project locations_count |
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1 228 |
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10 22 |
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| 35 |
11 12962 |
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12 28 |
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13 2 |
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14 99 |
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17 6 |
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18 3 |
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| 41 |
19 4 |
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| 42 |
2 37 |
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| 43 |
21 3 |
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22 1 |
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23 70 |
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24 4 |
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| 47 |
25 28 |
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| 48 |
3 20 |
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| 49 |
5 102 |
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| 50 |
6 29 |
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| 51 |
7 9 |
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| 52 |
8 1 |
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| 53 |
9 1 |
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| 54 |
___ |
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| 55 |
# locations |
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| 56 |
count |
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| 57 |
7052 |
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| 58 |
___ |
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| 59 |
# location events |
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count |
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| 61 |
13659 |
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| 62 |
___ |
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| 63 |
1st methods |
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| 64 |
project method |
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| 65 |
1 0.1 ha transect, stems >= 2.5 cm dbh |
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| 66 |
10 NULL |
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| 67 |
10 "Pseudotransect": collection of leaf samples from species recorded in previous 0.1 ha transect. Species sampled from same location as previous transect "c2750-1" (project "Boyle Transects"); do not necessarily correspond to same individuals. |
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| 68 |
10 "Pseudotransect": collection of leaf samples from species recorded in previous 0.1 ha transect. Species sampled from same location as previous transect "Savegre1" (project "OTS Transects"); do not necessarily correspond to same individuals. |
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| 69 |
10 0.1 ha transect, stems >= 2.5 cm dbh |
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| 70 |
11 20 m x 20 cover plots, all vascular plants |
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| 71 |
12 0.01 ha, stems >= 10 cm dbh; 16 subplots of 10 x 10 m per plot, 4 rows (UU, U, S, SS), 4 columns (BB, B, T, TT) |
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| 72 |
13 1 ha, stems >= 10 cm dbh |
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14 0.1 ha transect, stems >= 2.5 cm dbh |
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17 1 ha, stems >= 10 cm dbh |
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___ |
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| 76 |
1st observation measures |
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project observationmeasure |
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| 78 |
1 species (stems) |
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| 79 |
10 individuals |
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| 80 |
10 species (presence) |
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| 81 |
11 species (percent cover) |
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| 82 |
12 individuals |
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| 83 |
13 individuals |
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| 84 |
14 individuals |
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| 85 |
17 individuals |
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| 86 |
18 individuals |
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| 87 |
19 individuals |
|
| mappings/verify.sql | ||
|---|---|---|
| 1 |
SELECT '# projects' AS ___; |
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| 2 |
SELECT count(*) AS count |
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| 3 |
FROM project |
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JOIN party ON party_id = datasource_id AND organizationname = :datasource |
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; |
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| 6 |
|
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SELECT 'projects' AS ___; |
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SELECT projectname AS project |
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FROM project |
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JOIN party ON party_id = datasource_id AND organizationname = :datasource |
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ORDER BY project |
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; |
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|
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SELECT E'each project\'s # locations' AS ___; |
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SELECT projectname AS project, count(*) AS locations_count |
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FROM project |
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JOIN party ON party_id = datasource_id AND organizationname = :datasource |
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JOIN locationevent USING (project_id) |
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GROUP BY project |
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ORDER BY project |
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; |
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| 22 |
|
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| 23 |
SELECT '# locations' AS ___; |
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| 24 |
SELECT count(DISTINCT location_id) AS count |
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| 25 |
FROM locationevent |
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| 26 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
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WHERE parent_id IS NULL -- no subplots |
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| 28 |
; |
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| 29 |
|
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| 30 |
SELECT '# location events' AS ___; |
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| 31 |
SELECT count(*) AS count |
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| 32 |
FROM locationevent |
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| 33 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
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AND parent_id IS NULL -- no subplots |
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| 35 |
; |
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| 36 |
|
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| 37 |
SELECT '1st methods' AS ___; |
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| 38 |
SELECT DISTINCT |
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projectname AS project |
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| 40 |
, method.name AS method |
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| 41 |
FROM project |
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| 42 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
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| 43 |
JOIN locationevent USING (project_id) |
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| 44 |
JOIN method USING (method_id) |
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| 45 |
ORDER BY project, method |
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| 46 |
LIMIT 10; |
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| 47 |
|
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| 48 |
SELECT '1st observation measures' AS ___; |
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| 49 |
SELECT DISTINCT |
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| 50 |
projectname AS project |
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| 51 |
, method.observationmeasure AS observationmeasure |
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| 52 |
FROM project |
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| 53 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
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| 54 |
JOIN locationevent USING (project_id) |
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| 55 |
JOIN method USING (method_id) |
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| 56 |
ORDER BY project, observationmeasure |
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| 57 |
LIMIT 10; |
|
| inputs/SALVIAS/verify.plots.ref | ||
|---|---|---|
| 1 |
___ |
|
| 2 |
# projects |
|
| 3 |
count |
|
| 4 |
22 |
|
| 5 |
___ |
|
| 6 |
projects |
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| 7 |
project |
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| 8 |
1 |
|
| 9 |
10 |
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| 10 |
11 |
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| 11 |
12 |
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| 12 |
13 |
|
| 13 |
14 |
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| 14 |
17 |
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| 15 |
18 |
|
| 16 |
19 |
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| 17 |
2 |
|
| 18 |
21 |
|
| 19 |
22 |
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| 20 |
23 |
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| 21 |
24 |
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| 22 |
25 |
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| 23 |
26 |
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| 24 |
3 |
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| 25 |
5 |
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| 26 |
6 |
|
| 27 |
7 |
|
| 28 |
8 |
|
| 29 |
9 |
|
| 30 |
___ |
|
| 31 |
each project's # locations |
|
| 32 |
project locations_count |
|
| 33 |
1 228 |
|
| 34 |
10 22 |
|
| 35 |
11 12962 |
|
| 36 |
12 28 |
|
| 37 |
13 2 |
|
| 38 |
14 99 |
|
| 39 |
17 6 |
|
| 40 |
18 3 |
|
| 41 |
19 4 |
|
| 42 |
2 37 |
|
| 43 |
21 3 |
|
| 44 |
22 1 |
|
| 45 |
23 70 |
|
| 46 |
24 4 |
|
| 47 |
25 28 |
|
| 48 |
3 20 |
|
| 49 |
5 102 |
|
| 50 |
6 29 |
|
| 51 |
7 9 |
|
| 52 |
8 1 |
|
| 53 |
9 1 |
|
| 54 |
___ |
|
| 55 |
# locations |
|
| 56 |
count |
|
| 57 |
7052 |
|
| 58 |
___ |
|
| 59 |
# location events |
|
| 60 |
count |
|
| 61 |
13659 |
|
| 62 |
___ |
|
| 63 |
1st methods |
|
| 64 |
project method |
|
| 65 |
1 0.1 ha transect, stems >= 2.5 cm dbh |
|
| 66 |
10 NULL |
|
| 67 |
10 "Pseudotransect": collection of leaf samples from species recorded in previous 0.1 ha transect. Species sampled from same location as previous transect "c2750-1" (project "Boyle Transects"); do not necessarily correspond to same individuals. |
|
| 68 |
10 "Pseudotransect": collection of leaf samples from species recorded in previous 0.1 ha transect. Species sampled from same location as previous transect "Savegre1" (project "OTS Transects"); do not necessarily correspond to same individuals. |
|
| 69 |
10 0.1 ha transect, stems >= 2.5 cm dbh |
|
| 70 |
11 20 m x 20 cover plots, all vascular plants |
|
| 71 |
12 0.01 ha, stems >= 10 cm dbh; 16 subplots of 10 x 10 m per plot, 4 rows (UU, U, S, SS), 4 columns (BB, B, T, TT) |
|
| 72 |
13 1 ha, stems >= 10 cm dbh |
|
| 73 |
14 0.1 ha transect, stems >= 2.5 cm dbh |
|
| 74 |
17 1 ha, stems >= 10 cm dbh |
|
| 75 |
___ |
|
| 76 |
1st observation measures |
|
| 77 |
project observationmeasure |
|
| 78 |
1 species (stems) |
|
| 79 |
10 individuals |
|
| 80 |
10 species (presence) |
|
| 81 |
11 species (percent cover) |
|
| 82 |
12 individuals |
|
| 83 |
13 individuals |
|
| 84 |
14 individuals |
|
| 85 |
17 individuals |
|
| 86 |
18 individuals |
|
| 87 |
19 individuals |
|
| inputs/SALVIAS/verify.plots.ref.sql | ||
|---|---|---|
| 1 |
SELECT '# projects' AS ___; |
|
| 2 |
SELECT count(*) AS count FROM projects; |
|
| 3 |
|
|
| 4 |
SELECT 'projects' AS ___; |
|
| 5 |
SELECT CAST(project_id AS char) AS project FROM projects ORDER BY project; |
|
| 6 |
|
|
| 7 |
SELECT 'each project\'s # locations' AS ___; |
|
| 8 |
SELECT |
|
| 9 |
CAST(projects.project_id AS char) AS project |
|
| 10 |
, count(PlotID) AS locations_count |
|
| 11 |
FROM projects |
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| 12 |
JOIN plotMetadata ON plotMetadata.project_id = projects.project_id |
|
| 13 |
GROUP BY project |
|
| 14 |
ORDER BY project |
|
| 15 |
; |
|
| 16 |
|
|
| 17 |
SELECT '# locations' AS ___; |
|
| 18 |
SELECT count(DISTINCT LatDec, LongDec) AS count FROM plotMetadata |
|
| 19 |
; |
|
| 20 |
|
|
| 21 |
SELECT '# location events' AS ___; |
|
| 22 |
SELECT count(*) AS count FROM plotMetadata; |
|
| 23 |
|
|
| 24 |
SELECT '1st methods' AS ___; |
|
| 25 |
SELECT DISTINCT |
|
| 26 |
CAST(projects.project_id AS char) AS project |
|
| 27 |
, PlotMethod AS method |
|
| 28 |
FROM projects |
|
| 29 |
JOIN plotMetadata ON plotMetadata.project_id = projects.project_id |
|
| 30 |
ORDER BY project, method |
|
| 31 |
LIMIT 10; |
|
| 32 |
|
|
| 33 |
SELECT '1st observation measures' AS ___; |
|
| 34 |
SELECT DISTINCT |
|
| 35 |
CAST(projects.project_id AS char) AS project |
|
| 36 |
, lookup_MethodCode.Description AS observationmeasure |
|
| 37 |
FROM projects |
|
| 38 |
JOIN plotMetadata ON plotMetadata.project_id = projects.project_id |
|
| 39 |
JOIN lookup_MethodCode ON lookup_MethodCode.MethodCode = plotMetadata.MethodCode |
|
| 40 |
ORDER BY project, observationmeasure |
|
| 41 |
LIMIT 10; |
|
| 42 |
|
|
| 43 |
/* |
|
| 44 |
SELECT p.PlotID, p.SiteCode, COUNT(*) |
|
| 45 |
FROM projects pr JOIN plotMetadata p JOIN plotObservations o |
|
| 46 |
ON pr.project_id=p.project_id AND p.PlotID=o.PlotID |
|
| 47 |
WHERE p.project_id=2 |
|
| 48 |
GROUP BY p.PlotID, p.SiteCode; |
|
| 49 |
|
|
| 50 |
SELECT NoInd, COUNT(*) AS observations |
|
| 51 |
FROM plotObservations o JOIN plotMetadata p |
|
| 52 |
ON o.PlotID=p.PlotID |
|
| 53 |
WHERE project_id=2 |
|
| 54 |
GROUP BY NoInd; |
|
| 55 |
|
|
| 56 |
SELECT p.PlotID, p.SiteCode, SUM(NoInd) AS Individuals |
|
| 57 |
FROM projects pr JOIN plotMetadata p JOIN plotObservations o |
|
| 58 |
ON pr.project_id=p.project_id AND p.PlotID=o.PlotID |
|
| 59 |
WHERE p.project_id=2 |
|
| 60 |
GROUP BY p.PlotID, p.SiteCode; |
|
| 61 |
|
|
| 62 |
SELECT DISTINCT pr.project_id, project_name, PlotMethod, m.MethodCode, m.Description |
|
| 63 |
FROM projects pr JOIN plotMetadata p JOIN lookup_MethodCode m |
|
| 64 |
ON pr.project_id=p.project_id AND p.MethodCode=m.MethodCode |
|
| 65 |
WHERE m.MethodCode=8; |
|
| 66 |
|
|
| 67 |
SELECT NoInd, COUNT(*) AS observations |
|
| 68 |
FROM plotObservations o JOIN plotMetadata p JOIN lookup_MethodCode m |
|
| 69 |
ON o.PlotID=p.PlotID AND p.MethodCode=m.MethodCode |
|
| 70 |
WHERE project_id=2 |
|
| 71 |
GROUP BY NoInd; |
|
| 72 |
|
|
| 73 |
SELECT p.PlotID, p.SiteCode, SUM(NoInd) AS Individuals |
|
| 74 |
FROM projects pr JOIN plotMetadata p JOIN plotObservations o |
|
| 75 |
ON pr.project_id=p.project_id AND p.PlotID=o.PlotID |
|
| 76 |
WHERE p.project_id=1 |
|
| 77 |
GROUP BY p.PlotID, p.SiteCode |
|
| 78 |
LIMIT 10; |
|
| 79 |
|
|
| 80 |
SELECT PlotMethod, MethodCode, Description, COUNT(project_id) as projects |
|
| 81 |
FROM ( |
|
| 82 |
SELECT DISTINCT p.PlotMethod, p.MethodCode, p.Description, p.project_id |
|
| 83 |
FROM ( |
|
| 84 |
SELECT project_id, PlotID, PlotMethod, m.MethodCode, m.Description |
|
| 85 |
FROM plotMetadata p JOIN lookup_MethodCode m |
|
| 86 |
ON p.MethodCode=m.MethodCode |
|
| 87 |
) p JOIN plotObservations o JOIN stems s |
|
| 88 |
ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID |
|
| 89 |
GROUP BY project_id |
|
| 90 |
) AS a |
|
| 91 |
GROUP BY PlotMethod, MethodCode, Description; |
|
| 92 |
|
|
| 93 |
SELECT DISTINCT pr.project_id, project_name |
|
| 94 |
FROM projects pr JOIN plotMetadata p JOIN plotObservations o JOIN stems s |
|
| 95 |
ON pr.project_id=p.project_id AND p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID |
|
| 96 |
WHERE p.MethodCode=3; |
|
| 97 |
|
|
| 98 |
SELECT p.PlotID, SiteName as plot, COUNT(*) AS stems |
|
| 99 |
FROM plotMetadata p JOIN plotObservations o JOIN stems s |
|
| 100 |
ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID |
|
| 101 |
WHERE p.project_id=2 |
|
| 102 |
GROUP BY p.PlotID, SiteName |
|
| 103 |
LIMIT 10; |
|
| 104 |
|
|
| 105 |
SELECT p.PlotID, SiteName AS plot, COUNT(DISTINCT Family, Genus, Species) AS SpeciesCount |
|
| 106 |
FROM plotMetadata p JOIN plotObservations o |
|
| 107 |
ON p.PlotID=o.PlotID |
|
| 108 |
WHERE project_id=2 |
|
| 109 |
GROUP BY p.PlotID, SiteName; |
|
| 110 |
|
|
| 111 |
SELECT DISTINCT p.PlotID, SiteName AS plot, Family, CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName
|
|
| 112 |
FROM plotMetadata p JOIN plotObservations o |
|
| 113 |
ON p.PlotID=o.PlotID |
|
| 114 |
WHERE p.PlotID=298; |
|
| 115 |
|
|
| 116 |
SELECT name_status, count(*) FROM plotObservations GROUP BY name_status; |
|
| 117 |
|
|
| 118 |
SELECT DISTINCT p.PlotID, SiteName AS plot, Family, |
|
| 119 |
CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, name_status
|
|
| 120 |
FROM plotMetadata p JOIN plotObservations o |
|
| 121 |
ON p.PlotID=o.PlotID |
|
| 122 |
WHERE p.PlotID=298; |
|
| 123 |
|
|
| 124 |
SELECT DISTINCT p.PlotID, SiteName AS plot, Family, |
|
| 125 |
CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, name_status
|
|
| 126 |
FROM plotMetadata p JOIN plotObservations o |
|
| 127 |
ON p.PlotID=o.PlotID |
|
| 128 |
WHERE p.PlotID=298 AND name_status=1; |
|
| 129 |
|
|
| 130 |
SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, COUNT(*) AS individuals |
|
| 131 |
FROM plotMetadata p JOIN plotObservations o |
|
| 132 |
ON p.PlotID=o.PlotID |
|
| 133 |
WHERE p.PlotID=298 |
|
| 134 |
GROUP BY p.PlotID, plot, subplot; |
|
| 135 |
|
|
| 136 |
SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, SUM(NoInd) AS individuals |
|
| 137 |
FROM plotMetadata p JOIN plotObservations o |
|
| 138 |
ON p.PlotID=o.PlotID |
|
| 139 |
WHERE p.PlotID=298 |
|
| 140 |
GROUP BY p.PlotID, plot, subplot; |
|
| 141 |
|
|
| 142 |
SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, SUM(NoInd) AS individuals |
|
| 143 |
FROM plotMetadata p JOIN plotObservations o |
|
| 144 |
ON p.PlotID=o.PlotID |
|
| 145 |
WHERE p.PlotID=1 |
|
| 146 |
GROUP BY p.PlotID, plot, subplot; |
|
| 147 |
|
|
| 148 |
SELECT COUNT(*) FROM plotMetadata WHERE MethodCode=1; |
|
| 149 |
|
|
| 150 |
SELECT PlotID FROM plotMetadata WHERE MethodCode=1 LIMIT 1; |
|
| 151 |
|
|
| 152 |
SELECT p.PlotID, SiteCode AS plot, Family, |
|
| 153 |
CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, cover_percent
|
|
| 154 |
FROM plotMetadata p JOIN plotObservations o |
|
| 155 |
ON p.PlotID=o.PlotID |
|
| 156 |
WHERE p.PlotID=24589; |
|
| 157 |
|
|
| 158 |
SELECT p.PlotID, p.SiteCode as plot, Country, PolDiv1 AS stateProvince, pol2 AS countyParish, |
|
| 159 |
LatDec as latitude, LongDec as longitude, Elev as elevation |
|
| 160 |
FROM projects pr JOIN plotMetadata p |
|
| 161 |
ON pr.project_id=p.project_id |
|
| 162 |
WHERE pr.project_id=1 |
|
| 163 |
LIMIT 20; |
|
| 164 |
|
|
| 165 |
SELECT AccessCode, COUNT(*) |
|
| 166 |
FROM plotMetadata |
|
| 167 |
GROUP BY AccessCode; |
|
| 168 |
|
|
| 169 |
SELECT pr.project_id, project_name, project_pi, allow_download_all, PlotID, SiteCode, Country |
|
| 170 |
FROM projects pr JOIN plotMetadata p |
|
| 171 |
ON pr.project_id=p.project_id |
|
| 172 |
WHERE p.AccessCode=1; |
|
| 173 |
*/ |
|
| inputs/input.Makefile | ||
|---|---|---|
| 101 | 101 |
maps/$(via).%.full.csv: maps/$(via).%.csv $(selfMap) |
| 102 | 102 |
env ignore=1 $(root)/bin/union <$+|$(root)/bin/sort_map >$@ |
| 103 | 103 |
maps/$(via).%.full.csv: maps/$(via).%.csv # fallback if no self map |
| 104 |
cp -p $< $@
|
|
| 104 |
$(CP) $< $@
|
|
| 105 | 105 |
.PRECIOUS: maps/$(via).%.full.csv maps/$(via).%.csv $(selfMap) |
| 106 | 106 |
|
| 107 | 107 |
maps += $(patsubst maps/%.csv,maps/%.full.csv,$(viaMaps)) |
| ... | ... | |
| 152 | 152 |
|
| 153 | 153 |
##### Verification of import |
| 154 | 154 |
|
| 155 |
ifneq ($(wildcard verify*.ref*),) |
|
| 155 |
ifneq ($(wildcard verify.*.ref*),)
|
|
| 156 | 156 |
|
| 157 |
verify: verify.ref verify.out _always |
|
| 157 |
verify: $(addprefix verify-,$(tables)) _always ; |
|
| 158 |
|
|
| 159 |
verify-%: verify.%.ref verify.%.out _always |
|
| 158 | 160 |
-$(diffVerbose) $(+_) |
| 159 | 161 |
# don't abort on verification errors, which are expected during development |
| 162 |
# default: |
|
| 163 |
verify-%: verify.%.out _always |
|
| 164 |
$(if $(wildcard $<),cat $<) |
|
| 165 |
# don't run if verify.%.out's default do-nothing action was used |
|
| 160 | 166 |
|
| 161 | 167 |
verify = $(psqlAsBien) --set=datasource="'$(db)'" --no-align\ |
| 162 | 168 |
--field-separator=' ' --pset=footer=off --pset=null=NULL <$< >$@ |
| 163 | 169 |
|
| 164 |
verify.out: $(mappings)/verify.sql _always
|
|
| 170 |
verify.%.out: $(mappings)/verify.%.sql _always
|
|
| 165 | 171 |
$(verify) |
| 166 |
.PRECIOUS: %.out |
|
| 172 |
.PRECIOUS: verify.%.out |
|
| 173 |
# default: |
|
| 174 |
verify.%.out: _always ; |
|
| 167 | 175 |
|
| 168 |
all += verify.out
|
|
| 176 |
all += $(wildcard verify.*.out)
|
|
| 169 | 177 |
|
| 170 | 178 |
ifneq ($(dbFile),) |
| 171 | 179 |
%.ref: %.ref.sql |
| mappings/verify.plots.sql | ||
|---|---|---|
| 1 |
SELECT '# projects' AS ___; |
|
| 2 |
SELECT count(*) AS count |
|
| 3 |
FROM project |
|
| 4 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
|
| 5 |
; |
|
| 6 |
|
|
| 7 |
SELECT 'projects' AS ___; |
|
| 8 |
SELECT projectname AS project |
|
| 9 |
FROM project |
|
| 10 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
|
| 11 |
ORDER BY project |
|
| 12 |
; |
|
| 13 |
|
|
| 14 |
SELECT E'each project\'s # locations' AS ___; |
|
| 15 |
SELECT projectname AS project, count(*) AS locations_count |
|
| 16 |
FROM project |
|
| 17 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
|
| 18 |
JOIN locationevent USING (project_id) |
|
| 19 |
GROUP BY project |
|
| 20 |
ORDER BY project |
|
| 21 |
; |
|
| 22 |
|
|
| 23 |
SELECT '# locations' AS ___; |
|
| 24 |
SELECT count(DISTINCT location_id) AS count |
|
| 25 |
FROM locationevent |
|
| 26 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
|
| 27 |
WHERE parent_id IS NULL -- no subplots |
|
| 28 |
; |
|
| 29 |
|
|
| 30 |
SELECT '# location events' AS ___; |
|
| 31 |
SELECT count(*) AS count |
|
| 32 |
FROM locationevent |
|
| 33 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
|
| 34 |
AND parent_id IS NULL -- no subplots |
|
| 35 |
; |
|
| 36 |
|
|
| 37 |
SELECT '1st methods' AS ___; |
|
| 38 |
SELECT DISTINCT |
|
| 39 |
projectname AS project |
|
| 40 |
, method.name AS method |
|
| 41 |
FROM project |
|
| 42 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
|
| 43 |
JOIN locationevent USING (project_id) |
|
| 44 |
JOIN method USING (method_id) |
|
| 45 |
ORDER BY project, method |
|
| 46 |
LIMIT 10; |
|
| 47 |
|
|
| 48 |
SELECT '1st observation measures' AS ___; |
|
| 49 |
SELECT DISTINCT |
|
| 50 |
projectname AS project |
|
| 51 |
, method.observationmeasure AS observationmeasure |
|
| 52 |
FROM project |
|
| 53 |
JOIN party ON party_id = datasource_id AND organizationname = :datasource |
|
| 54 |
JOIN locationevent USING (project_id) |
|
| 55 |
JOIN method USING (method_id) |
|
| 56 |
ORDER BY project, observationmeasure |
|
| 57 |
LIMIT 10; |
|
Also available in: Unified diff
input.Makefile: verify: Made verifications table-specific