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10604
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aaronmk
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SELECT util.search_path_append('util');
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| 2 |
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| 3 |
10619
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aaronmk
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SELECT create_if_not_exists($$CREATE INDEX "Specimen.infrarank" ON $$||:table_str||$$ ("EQUIV#to:usdaRank#infrarank")$$); -- runtime: 0.1 s ("Time: 135.984 ms") @starscream
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| 4 |
10604
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aaronmk
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| 5 |
10614
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aaronmk
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-- remove mismapped values
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| 6 |
10619
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aaronmk
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UPDATE :table SET "EQUIV#to:usdaRank#infrarank" = NULL WHERE "EQUIV#to:usdaRank#infrarank" = 'L.'; -- runtime: ~0 ("Time: 2.370 ms") @starscream
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| 7 |
10614
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aaronmk
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| 8 |
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| 9 |
10604
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aaronmk
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SELECT mk_derived_col((:table_str, 'specimenDonorInstitution'),
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-- UNCCD likely = UNCC database
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10619
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aaronmk
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$$_map('UNCCD=>UNCC, *=>*', "specimenDonorInstitution_verbatim")$$)
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| 12 |
10604
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aaronmk
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; -- runtime: 1 s ("Time: 1057.222 ms") @starscream
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| 14 |
10618
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aaronmk
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SELECT mk_derived_col((:table_str, 'recordedBy'),
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10619
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aaronmk
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$$_join("recordedBy__primary", "recordedBy__additional__1", "recordedBy__additional__2", "recordedBy__additional__3")$$)
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10618
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aaronmk
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; -- runtime: 1 s ("Time: 1001.616 ms") @starscream
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SELECT mk_derived_col((:table_str, 'occurrenceRemarks'),
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10619
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aaronmk
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$$_join("occurrenceRemarks__1", "occurrenceRemarks__2", "occurrenceRemarks__3", "occurrenceRemarks__4")$$)
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| 20 |
10618
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aaronmk
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; -- runtime: 1 s ("Time: 996.729 ms") @starscream
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| 21 |
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| 22 |
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| 23 |
10604
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aaronmk
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SELECT mk_derived_col((:table_str, 'cultivated__campus'),
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/* "this refers to occurrence on the UNCC campus, but I do not know the meaning
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of the codes. Presumably C = cultivated"
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(https://projects.nceas.ucsb.edu/nceas/attachments/download/723/UNCC-validate_rkp_bb_rkp.xlsx#Campus)
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*/
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| 28 |
10619
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aaronmk
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$$_map('*=>true', "cultivated__campus__verbatim")$$)
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| 29 |
10604
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aaronmk
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; -- runtime: 0.5 s ("Time: 353.373 ms") @starscream
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| 30 |
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| 31 |
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SELECT mk_derived_col((:table_str, 'cultivated__main'),
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-- for our purposes, anything non-NULL should be assumed to be cultivated
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| 33 |
10619
|
aaronmk
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$$_map('*=>true', "cultivated__main__verbatim")$$)
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| 34 |
10604
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aaronmk
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; -- runtime: 0.5 s ("Time: 403.916 ms") @starscream
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| 35 |
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| 36 |
10618
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aaronmk
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SELECT mk_derived_col((:table_str, 'cultivated'),
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$$_alt("cultivated__main", "cultivated__campus")$$)
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| 38 |
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; -- runtime: 0.5 s ("Time: 394.182 ms") @starscream
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| 39 |
10604
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aaronmk
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| 40 |
10618
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aaronmk
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| 41 |
10604
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aaronmk
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CREATE OR REPLACE FUNCTION map_reproductive_condition(value text)
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RETURNS text AS
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$BODY$
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| 44 |
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/*
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| 45 |
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"
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| 46 |
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Most are typos
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| 47 |
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| 48 |
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A = absent
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| 49 |
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I = immature
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| 51 |
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M = mature
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| 53 |
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" (mailto:jim@habitatassessment.com?Habitat_Assessment.Jim_Matthews.to(uniola@email.unc.edu?Bob_Peet).2010-12-3:17:08.Re:_herbarium_phenology_codes_(fwd))
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*/
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SELECT util._map('A=>absent, I=>immature, M=>mature, *=>NULL', $1)
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| 56 |
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$BODY$
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| 57 |
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LANGUAGE sql IMMUTABLE
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| 58 |
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COST 100;
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| 59 |
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| 60 |
10619
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aaronmk
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SELECT mk_derived_col((:table_str, 'flower'), $$map_reproductive_condition("flower_verbatim")$$); -- runtime: 0.5 s ("Time: 635.054 ms") @starscream
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| 61 |
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SELECT mk_derived_col((:table_str, 'fruit' ), $$map_reproductive_condition("fruit_verbatim" )$$); -- runtime: 0.5 s ("Time: 591.854 ms") @starscream
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| 62 |
10618
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aaronmk
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| 63 |
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SELECT mk_derived_col((:table_str, 'reproductiveCondition'),
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| 64 |
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-- using the suggested values at DwC.vegpath.org?reproductiveCondition
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| 65 |
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$$_join(
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| 66 |
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_map(('{immature,mature}'::text[] => 'in bloom' ) || '*=>NULL', "flower")
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| 67 |
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, _map(('{immature,mature}'::text[] => 'fruit-bearing') || '*=>NULL', "fruit" )
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| 68 |
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)$$)
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| 69 |
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; -- runtime: 1.5 s ("Time: 1433.204 ms") @starscream
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