Revision 1197
Added by Aaron Marcuse-Kubitza over 12 years ago
inputs/NYBG-CSV/maps/DwC.specimens.csv | ||
---|---|---|
1 |
"NYBG-DwC","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/","Comments" |
|
1 |
"NYBG-CSV-DwC","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/","Comments"
|
|
2 | 2 |
"key",, |
3 | 3 |
"InstitutionCode",,"Map to nothing so it doesn't overwrite the auto-generated institutionCode" |
4 | 4 |
"MinimumElevation","MinimumElevation/_nullIf:[null=.]/value", |
inputs/NYBG-CSV/maps/DwC.specimens.full.csv | ||
---|---|---|
1 |
NYBG-DwC,"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/",Comments |
|
1 |
NYBG-CSV-DwC,"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionCode=$/_ignore/inLabel]/",Comments
|
|
2 | 2 |
BasisOfRecord,BasisOfRecord |
3 | 3 |
BoundingBox,BoundingBox |
4 | 4 |
CatalogNumber,CatalogNumber |
inputs/NYBG-CSV/maps/VegBIEN.specimens.csv | ||
---|---|---|
1 |
NYBG-DwC,VegBIEN:/specimenreplicate,Comments,Order |
|
1 |
NYBG-CSV-DwC,VegBIEN:/specimenreplicate,Comments,Order
|
|
2 | 2 |
Country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63 |
3 | 3 |
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63 |
4 | 4 |
StateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65 |
inputs/SALVIAS-CSV/maps/VegX.plots.csv | ||
---|---|---|
1 |
"SALVIAS","VegX:/*s/plotObservation","Comments" |
|
1 |
"SALVIAS-CSV","VegX:/*s/plotObservation","Comments"
|
|
2 | 2 |
"project","/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title", |
3 | 3 |
"PLOT_ID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
4 | 4 |
"plot_code",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)" |
inputs/SALVIAS-CSV/maps/VegX.organisms.csv | ||
---|---|---|
1 |
"SALVIAS","VegX:/*s/individualOrganismObservation","Comments" |
|
1 |
"SALVIAS-CSV","VegX:/*s/individualOrganismObservation","Comments"
|
|
2 | 2 |
"OBSERVATION_ID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
3 | 3 |
"PLOT_ID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above." |
4 | 4 |
"plot_code","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: Same as plotCode, above" |
inputs/SALVIAS-CSV/maps/VegX.plots.full.csv | ||
---|---|---|
1 |
"SALVIAS","VegX:/*s/plotObservation","Comments" |
|
1 |
"SALVIAS-CSV","VegX:/*s/plotObservation","Comments"
|
|
2 | 2 |
"project","/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title", |
3 | 3 |
"PLOT_ID",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
4 | 4 |
"plot_code",":[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)" |
inputs/SALVIAS-CSV/maps/VegX.organisms.full.csv | ||
---|---|---|
1 |
"SALVIAS","VegX:/*s/individualOrganismObservation","Comments" |
|
1 |
"SALVIAS-CSV","VegX:/*s/individualOrganismObservation","Comments"
|
|
2 | 2 |
"OBSERVATION_ID",":[*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
3 | 3 |
"PLOT_ID","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above." |
4 | 4 |
"plot_code","/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier","Brad: Same as plotCode, above" |
inputs/SALVIAS-CSV/maps/VegBIEN.plots.csv | ||
---|---|---|
1 |
SALVIAS,VegBIEN:/locationevent,Comments |
|
1 |
SALVIAS-CSV,VegBIEN:/locationevent,Comments
|
|
2 | 2 |
plot_area_ha,/*_id/location/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed" |
3 | 3 |
elev_m,/*_id/location/elevation/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick. |
4 | 4 |
country,"/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename", |
inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
---|---|---|
1 |
SALVIAS,VegBIEN:/taxonoccurrence,Comments |
|
1 |
SALVIAS-CSV,VegBIEN:/taxonoccurrence,Comments
|
|
2 | 2 |
census_date,/*_id/locationevent/obsstartdate/_date/year, |
3 | 3 |
plot_code,/*_id/locationevent/parent_id/locationevent/authorlocationcode,"Brad: Same as plotCode, above" |
4 | 4 |
PLOT_ID,/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above." |
Also available in: Unified diff
inputs maps: Changed input root labels to match dir names since verify expects these to be the same